3qbl - Revision history

OCA at 17:11, 1 November 2023

OCA — Wed, 01 Nov 2023 17:11:56 GMT

←Older revision		Revision as of 17:11, 1 November 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3qbl]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QBL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QBL FirstGlance]. <br>		<table><tr><td colspan='2'>[[3qbl]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QBL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QBL FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=22B:BACTERIORUBERIN'>22B</scene>~~, ~~<scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height~~: ~~3em;~~'>~~[[3a7k\|3a7k]]~~, ~~[[3qbg\|3qbg]], [[3qbi\|3qbi]], [[3qbk\|3qbk]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=22B:BACTERIORUBERIN'>22B</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qbl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qbl OCA], [https://pdbe.org/3qbl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qbl RCSB], [https://www.ebi.ac.uk/pdbsum/3qbl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qbl ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qbl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qbl OCA], [https://pdbe.org/3qbl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qbl RCSB], [https://www.ebi.ac.uk/pdbsum/3qbl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qbl ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/BACH_NATPH BACH_NATPH] Light-driven anion pump. Binding affinity for the anions is in the order, bromide > chloride > nitrate > azide > bromate and binding is pH dependent.

	==See Also==		==See Also==
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	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Natronomonas pharaonis]]		[[Category: Natronomonas pharaonis]]
-	[[Category: Kanada, S]]	+	[[Category: Kanada S]]
-	[[Category: Kouyama, T]]	+	[[Category: Kouyama T]]
-	~~[[Category: Ion pump]]~~	+
-	~~[[Category: Membrane protein]]~~	+
-	~~[[Category: Retinal protein~~]]	+

OCA at 06:00, 8 June 2022

OCA — Wed, 08 Jun 2022 06:00:59 GMT

←Older revision		Revision as of 06:00, 8 June 2022
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	==Pharaonis halorhodopsin complexed with nitrate==		==Pharaonis halorhodopsin complexed with nitrate==
-	<StructureSection load='3qbl' size='340' side='right' caption='[[3qbl]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='3qbl' size='340' side='right'caption='[[3qbl]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3qbl]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QBL OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3QBL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3qbl]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QBL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QBL FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=22B:BACTERIORUBERIN'>22B</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=22B:BACTERIORUBERIN'>22B</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a7k\|3a7k]], [[3qbg\|3qbg]], [[3qbi\|3qbi]], [[3qbk\|3qbk]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3a7k\|3a7k]], [[3qbg\|3qbg]], [[3qbi\|3qbi]], [[3qbk\|3qbk]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3qbl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qbl OCA], [~~http~~://pdbe.org/3qbl PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3qbl RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3qbl PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3qbl ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qbl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qbl OCA], [https://pdbe.org/3qbl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qbl RCSB], [https://www.ebi.ac.uk/pdbsum/3qbl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qbl ProSAT]</span></td></tr>
	</table>		</table>

	==See Also==		==See Also==
-	*[[Bacteriorhodopsin\|Bacteriorhodopsin]]	+	*[[Bacteriorhodopsin 3D structures\|Bacteriorhodopsin 3D structures]]
-	*[[Rhodopsin\|Rhodopsin]]	+	*[[Rhodopsin 3D structures\|Rhodopsin 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Natronomonas pharaonis]]		[[Category: Natronomonas pharaonis]]
	[[Category: Kanada, S]]		[[Category: Kanada, S]]

OCA at 11:25, 10 December 2016

OCA — Sat, 10 Dec 2016 11:25:52 GMT

←Older revision		Revision as of 11:25, 10 December 2016
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		+
	==Pharaonis halorhodopsin complexed with nitrate==		==Pharaonis halorhodopsin complexed with nitrate==
	<StructureSection load='3qbl' size='340' side='right' caption='[[3qbl]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='3qbl' size='340' side='right' caption='[[3qbl]], [[Resolution\|resolution]] 2.20Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=22B:BACTERIORUBERIN'>22B</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=22B:BACTERIORUBERIN'>22B</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a7k\|3a7k]], [[3qbg\|3qbg]], [[3qbi\|3qbi]], [[3qbk\|3qbk]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a7k\|3a7k]], [[3qbg\|3qbg]], [[3qbi\|3qbi]], [[3qbk\|3qbk]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qbl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qbl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qbl RCSB], [http://www.ebi.ac.uk/pdbsum/3qbl PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qbl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qbl OCA], [http://pdbe.org/3qbl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3qbl RCSB], [http://www.ebi.ac.uk/pdbsum/3qbl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3qbl ProSAT]</span></td></tr>
	</table>		</table>

OCA at 13:36, 9 December 2014

OCA — Tue, 09 Dec 2014 13:36:12 GMT

←Older revision		Revision as of 13:36, 9 December 2014
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-	~~[[Image:3qbl.png\|left\|200px]]~~	+	==Pharaonis halorhodopsin complexed with nitrate==
-		+	<StructureSection load='3qbl' size='340' side='right' caption='[[3qbl]], [[Resolution\|resolution]] 2.20Å' scene=''>
-	~~{{STRUCTURE_3qbl\| PDB=3qbl \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3qbl]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QBL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QBL FirstGlance]. <br>
-	===Pharaonis halorhodopsin complexed with nitrate===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=22B:BACTERIORUBERIN'>22B</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a7k\|3a7k]], [[3qbg\|3qbg]], [[3qbi\|3qbi]], [[3qbk\|3qbk]]</td></tr>
-		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qbl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qbl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qbl RCSB], [http://www.ebi.ac.uk/pdbsum/3qbl PDBsum]</span></td></tr>
-	==~~About this Structure~~==	+	</table>
-	[[3qbl]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QBL OCA].	+

	==See Also==		==See Also==
		+	*[[Bacteriorhodopsin\|Bacteriorhodopsin]]
	*[[Rhodopsin\|Rhodopsin]]		*[[Rhodopsin\|Rhodopsin]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Natronomonas pharaonis]]		[[Category: Natronomonas pharaonis]]
-	[[Category: Kanada, S.]]	+	[[Category: Kanada, S]]
-	[[Category: Kouyama, T.]]	+	[[Category: Kouyama, T]]
	[[Category: Ion pump]]		[[Category: Ion pump]]
	[[Category: Membrane protein]]		[[Category: Membrane protein]]
	[[Category: Retinal protein]]		[[Category: Retinal protein]]

OCA at 20:47, 20 October 2012

OCA — Sat, 20 Oct 2012 20:47:05 GMT

←Older revision		Revision as of 20:47, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[3qbl]] is a 3 chain structure ~~of [[Rhodopsin]]~~ with sequence from [http://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QBL OCA].	+	[[3qbl]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QBL OCA].

	==See Also==		==See Also==

OCA at 11:36, 27 July 2012

OCA — Fri, 27 Jul 2012 11:36:38 GMT

←Older revision		Revision as of 11:36, 27 July 2012
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-	[[Image:3qbl.~~jpg~~\|left\|200px]]	+	[[Image:3qbl.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3qbl", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3qbl\| PDB=3qbl \| SCENE= }}		{{STRUCTURE_3qbl\| PDB=3qbl \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	[[3qbl]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QBL OCA].	+	[[3qbl]] is a 3 chain structure of [[Rhodopsin]] with sequence from [http://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QBL OCA].
		+
		+	==See Also==
		+	*[[Rhodopsin\|Rhodopsin]]
	[[Category: Natronomonas pharaonis]]		[[Category: Natronomonas pharaonis]]
	[[Category: Kanada, S.]]		[[Category: Kanada, S.]]

OCA at 06:57, 31 August 2011

OCA — Wed, 31 Aug 2011 06:57:23 GMT

←Older revision		Revision as of 06:57, 31 August 2011
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-	~~'''Unreleased structure'''~~	+	[[Image:3qbl.jpg\|left\|200px]]

-	The ~~entry 3qbl~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3qbl", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3qbl\| PDB=3qbl \| SCENE= }}

-	~~Authors: Kouyama, T., Kanada, S.~~	+	===Pharaonis halorhodopsin complexed with nitrate===

-	~~Description: Pharaonis halorhodopsin complexed~~ with ~~nitrate~~	+
		+	==About this Structure==
		+	[[3qbl]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QBL OCA].
		+	[[Category: Natronomonas pharaonis]]
		+	[[Category: Kanada, S.]]
		+	[[Category: Kouyama, T.]]
		+	[[Category: Ion pump]]
		+	[[Category: Membrane protein]]
		+	[[Category: Retinal protein]]

OCA at 05:33, 27 July 2011

OCA — Wed, 27 Jul 2011 05:33:42 GMT

←Older revision		Revision as of 05:33, 27 July 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3qbl is ON HOLD	+	The entry 3qbl is ON HOLD until Paper Publication

	Authors: Kouyama, T., Kanada, S.		Authors: Kouyama, T., Kanada, S.

	Description: Pharaonis halorhodopsin complexed with nitrate		Description: Pharaonis halorhodopsin complexed with nitrate

OCA at 05:48, 9 February 2011

OCA — Wed, 09 Feb 2011 05:48:43 GMT

←Older revision		Revision as of 05:48, 9 February 2011
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	Authors: Kouyama, T., Kanada, S.		Authors: Kouyama, T., Kanada, S.

-	Description: ~~pharaonis~~ halorhodopsin complexed with nitrate	+	Description: Pharaonis halorhodopsin complexed with nitrate

OCA: Protected "3qbl" [edit=sysop:move=sysop]

OCA — Wed, 19 Jan 2011 05:53:20 GMT

Protected "3qbl" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:53, 19 January 2011