3qde - Revision history

OCA at 10:47, 21 February 2024

OCA — Wed, 21 Feb 2024 10:47:01 GMT

←Older revision		Revision as of 10:47, 21 February 2024
Line 3:		Line 3:
	<StructureSection load='3qde' size='340' side='right'caption='[[3qde]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='3qde' size='340' side='right'caption='[[3qde]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3qde]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"ruminiclostridium_thermocellum"_yutin_and_galperin_2013 "ruminiclostridium thermocellum" yutin and galperin 2013~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QDE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3qde]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus Acetivibrio thermocellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QDE FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=144:TRIS~~-~~HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>~~, ~~<scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.4Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>cbp, Q8VP44 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~1515~~ "~~Ruminiclostridium thermocellum~~" ~~Yutin and Galperin 2013])</td~~><~~/tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qde OCA], [https://pdbe.org/3qde PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qde RCSB], [https://www.ebi.ac.uk/pdbsum/3qde PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qde ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qde OCA], [https://pdbe.org/3qde PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qde RCSB], [https://www.ebi.ac.uk/pdbsum/3qde PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qde ProSAT]</span></td></tr>
	</table>		</table>
-	~~<div style~~=~~"background-color:#fffaf0;">~~	+	== Function ==
-	=~~= Publication Abstract from PubMed~~ ==	+	[https://www.uniprot.org/uniprot/Q8VP44_ACETH Q8VP44_ACETH]
-	Clostridium thermocellum is a cellulosome-producing bacterium that is able to efficiently degrade and utilize cellulose as a sole carbon source. Cellobiose phosphorylase (CBP) plays a critical role in cellulose degradation by catalyzing the reversible phosphate-dependent hydrolysis of cellobiose, the major product of cellulose degradation, into alpha-D-glucose 1-phosphate and D-glucose. CBP from C. thermocellum is a modular enzyme composed of four domains [N-terminal domain, helical linker, (alpha/alpha)(6)-barrel domain and C-terminal domain] and is a member of glycoside hydrolase family 94. The 2.4 A resolution X-ray crystal structure of C. thermocellum CBP reveals the residues involved in coordinating the catalytic phosphate as well as the residues that are likely to be involved in substrate binding and discrimination.	+
-		+
-	Structure of cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate.,Bianchetti CM, Elsen NL, Fox BG, Phillips GN Jr Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Nov 1;67(Pt 11):1345-9., Epub 2011 Oct 25. PMID:22102229<ref>PMID:~~22102229<~~/~~ref>~~	+
-		+
-	~~From MEDLINE®~~/~~PubMed®, a database of the U~~.S. ~~National Library of Medicine.<br>~~	+
-	</~~div>~~	+
-	~~<div class="pdbe-citations 3qde" style="background-color:#fffaf0;"><~~/~~div>~~	+
-	~~== References ==~~	+
-	~~<references/>~~	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ruminiclostridium thermocellum yutin and galperin 2013]]~~	+	[[Category: Acetivibrio thermocellus]]
-	~~[[Category: Cellobiose phosphorylase~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bianchetti~~, C M~~]]	+	[[Category: Bianchetti CM]]
-	[[Category: Elsen~~, N L~~]]	+	[[Category: Elsen NL]]
-	[[Category: Fox~~, B G~~]]	+	[[Category: Fox BG]]
-	[[Category: Horn~~, M K~~]]	+	[[Category: Horn MK]]
-	[[Category: Phillips~~, G N]]~~	+	[[Category: Phillips Jr GN]]
-	~~[[Category: Cellobiose]]~~	+
-	~~[[Category: Cellulase]]~~	+
-	~~[[Category: Phosphate]]~~	+
-	~~[[Category: Phosphorylase]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 06:03, 8 June 2022

OCA — Wed, 08 Jun 2022 06:03:26 GMT

←Older revision		Revision as of 06:03, 8 June 2022
Line 1:		Line 1:

	==The structure of Cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate==		==The structure of Cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate==
-	<StructureSection load='3qde' size='340' side='right' caption='[[3qde]], [[Resolution\|resolution]] 2.40Å' scene=''>	+	<StructureSection load='3qde' size='340' side='right'caption='[[3qde]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3qde]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"ruminiclostridium_thermocellum"_yutin_and_galperin_2013 "ruminiclostridium thermocellum" yutin and galperin 2013]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDE OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3QDE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3qde]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"ruminiclostridium_thermocellum"_yutin_and_galperin_2013 "ruminiclostridium thermocellum" yutin and galperin 2013]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QDE FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cbp, Q8VP44 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1515 "Ruminiclostridium thermocellum" Yutin and Galperin 2013])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cbp, Q8VP44 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1515 "Ruminiclostridium thermocellum" Yutin and Galperin 2013])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3qde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qde OCA], [~~http~~://pdbe.org/3qde PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3qde RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3qde PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3qde ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qde OCA], [https://pdbe.org/3qde PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qde RCSB], [https://www.ebi.ac.uk/pdbsum/3qde PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qde ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 24:		Line 24:
	[[Category: Ruminiclostridium thermocellum yutin and galperin 2013]]		[[Category: Ruminiclostridium thermocellum yutin and galperin 2013]]
	[[Category: Cellobiose phosphorylase]]		[[Category: Cellobiose phosphorylase]]
		+	[[Category: Large Structures]]
	[[Category: Bianchetti, C M]]		[[Category: Bianchetti, C M]]
	[[Category: Elsen, N L]]		[[Category: Elsen, N L]]

OCA at 09:13, 8 November 2017

OCA — Wed, 08 Nov 2017 09:13:42 GMT

←Older revision		Revision as of 09:13, 8 November 2017
Line 3:		Line 3:
	<StructureSection load='3qde' size='340' side='right' caption='[[3qde]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='3qde' size='340' side='right' caption='[[3qde]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3qde]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Atcc_27405 Atcc 27405~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QDE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3qde]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"ruminiclostridium_thermocellum"_yutin_and_galperin_2013 "ruminiclostridium thermocellum" yutin and galperin 2013]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QDE FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cbp, Q8VP44 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1515 ~~ATCC 27405~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cbp, Q8VP44 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1515 "Ruminiclostridium thermocellum" Yutin and Galperin 2013])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qde OCA], [http://pdbe.org/3qde PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3qde RCSB], [http://www.ebi.ac.uk/pdbsum/3qde PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3qde ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qde OCA], [http://pdbe.org/3qde PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3qde RCSB], [http://www.ebi.ac.uk/pdbsum/3qde PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3qde ProSAT]</span></td></tr>
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 27405~~]]	+	[[Category: Ruminiclostridium thermocellum yutin and galperin 2013]]
	[[Category: Cellobiose phosphorylase]]		[[Category: Cellobiose phosphorylase]]
	[[Category: Bianchetti, C M]]		[[Category: Bianchetti, C M]]

OCA at 21:15, 4 August 2016

OCA — Thu, 04 Aug 2016 21:15:15 GMT

←Older revision		Revision as of 21:15, 4 August 2016
Line 1:		Line 1:
		+
	==The structure of Cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate==		==The structure of Cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate==
	<StructureSection load='3qde' size='340' side='right' caption='[[3qde]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='3qde' size='340' side='right' caption='[[3qde]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3qde]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Clostridium_thermocellum Clostridium thermocellum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QDE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3qde]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_27405 Atcc 27405]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QDE FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cbp, Q8VP44 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1515 ~~Clostridium thermocellum~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cbp, Q8VP44 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1515 ATCC 27405])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qde OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qde RCSB], [http://www.ebi.ac.uk/pdbsum/3qde PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qde OCA], [http://pdbe.org/3qde PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3qde RCSB], [http://www.ebi.ac.uk/pdbsum/3qde PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3qde ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3qde" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 27405]]
	[[Category: Cellobiose phosphorylase]]		[[Category: Cellobiose phosphorylase]]
-	[[Category: Clostridium thermocellum]]
	[[Category: Bianchetti, C M]]		[[Category: Bianchetti, C M]]
	[[Category: Elsen, N L]]		[[Category: Elsen, N L]]

OCA at 21:11, 3 January 2015

OCA — Sat, 03 Jan 2015 21:11:02 GMT

←Older revision		Revision as of 21:11, 3 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3qde]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QDE FirstGlance]. <br>		<table><tr><td colspan='2'>[[3qde]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QDE FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cbp, Q8VP44 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1515 Clostridium thermocellum])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cbp, Q8VP44 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1515 Clostridium thermocellum])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qde OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qde RCSB], [http://www.ebi.ac.uk/pdbsum/3qde PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qde OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qde RCSB], [http://www.ebi.ac.uk/pdbsum/3qde PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 14:		Line 14:
	Structure of cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate.,Bianchetti CM, Elsen NL, Fox BG, Phillips GN Jr Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Nov 1;67(Pt 11):1345-9., Epub 2011 Oct 25. PMID:22102229<ref>PMID:22102229</ref>		Structure of cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate.,Bianchetti CM, Elsen NL, Fox BG, Phillips GN Jr Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Nov 1;67(Pt 11):1345-9., Epub 2011 Oct 25. PMID:22102229<ref>PMID:22102229</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 22:		Line 22:
	[[Category: Cellobiose phosphorylase]]		[[Category: Cellobiose phosphorylase]]
	[[Category: Clostridium thermocellum]]		[[Category: Clostridium thermocellum]]
-	[[Category: Bianchetti, C M.]]	+	[[Category: Bianchetti, C M]]
-	[[Category: Elsen, N L.]]	+	[[Category: Elsen, N L]]
-	[[Category: Fox, B G.]]	+	[[Category: Fox, B G]]
-	[[Category: Horn, M K.]]	+	[[Category: Horn, M K]]
-	[[Category: Phillips, G N.]]	+	[[Category: Phillips, G N]]
	[[Category: Cellobiose]]		[[Category: Cellobiose]]
	[[Category: Cellulase]]		[[Category: Cellulase]]

OCA at 05:22, 4 June 2014

OCA — Wed, 04 Jun 2014 05:22:53 GMT

←Older revision		Revision as of 05:22, 4 June 2014
Line 1:		Line 1:
-	[[~~Image:~~3qde.~~png~~\|~~left~~\|~~200px~~]]	+	==The structure of Cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate==
		+	<StructureSection load='3qde' size='340' side='right' caption='[[3qde]], [[Resolution\|resolution]] 2.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3qde]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QDE FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cbp, Q8VP44 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1515 Clostridium thermocellum])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qde OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qde RCSB], [http://www.ebi.ac.uk/pdbsum/3qde PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Clostridium thermocellum is a cellulosome-producing bacterium that is able to efficiently degrade and utilize cellulose as a sole carbon source. Cellobiose phosphorylase (CBP) plays a critical role in cellulose degradation by catalyzing the reversible phosphate-dependent hydrolysis of cellobiose, the major product of cellulose degradation, into alpha-D-glucose 1-phosphate and D-glucose. CBP from C. thermocellum is a modular enzyme composed of four domains [N-terminal domain, helical linker, (alpha/alpha)(6)-barrel domain and C-terminal domain] and is a member of glycoside hydrolase family 94. The 2.4 A resolution X-ray crystal structure of C. thermocellum CBP reveals the residues involved in coordinating the catalytic phosphate as well as the residues that are likely to be involved in substrate binding and discrimination.

-	~~<!--~~	+	Structure of cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate.,Bianchetti CM, Elsen NL, Fox BG, Phillips GN Jr Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Nov 1;67(Pt 11):1345-9., Epub 2011 Oct 25. PMID:22102229<ref>PMID:22102229</ref>
-	~~The line below this paragraph~~, ~~containing "STRUCTURE_3qde"~~, ~~creates the "Structure Box" on the page~~.	+
-	~~You may change the PDB parameter~~ (~~which sets the PDB file loaded into the applet)~~	+
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded~~),	+
-	~~or leave the SCENE parameter empty for the default display~~.	+
-	-->	+
-	~~{{STRUCTURE_3qde\| PDB=3qde \| SCENE= }}~~	+

-	~~===The structure~~ of ~~Cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-		+	== References ==
-	~~<!--~~	+	<references/>
-	~~The line below this paragraph, {{ABSTRACT_PUBMED_22102229}}, adds~~ the ~~Publication Abstract to the page~~	+	__TOC__
-	~~(as it appears on PubMed at http://www~~.~~pubmed~~.~~gov), where 22102229 is the PubMed ID number~~.	+	</StructureSection>
-	-->	+
-	~~{{ABSTRACT_PUBMED_22102229}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3qde]] is a 2 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDE OCA].~~	+
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:022102229<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Cellobiose phosphorylase]]		[[Category: Cellobiose phosphorylase]]
	[[Category: Clostridium thermocellum]]		[[Category: Clostridium thermocellum]]

OCA at 06:04, 11 April 2012

OCA — Wed, 11 Apr 2012 06:04:17 GMT

←Older revision		Revision as of 06:04, 11 April 2012
Line 1:		Line 1:
-	[[Image:3qde.~~jpg~~\|left\|200px]]	+	[[Image:3qde.png\|left\|200px]]

	<!--		<!--
Line 11:		Line 11:
	===The structure of Cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate===		===The structure of Cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_22102229}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 22102229 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_22102229}}

	==About this Structure==		==About this Structure==
	[[3qde]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDE OCA].		[[3qde]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDE OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:022102229</ref><references group="xtra"/>
	[[Category: Cellobiose phosphorylase]]		[[Category: Cellobiose phosphorylase]]
	[[Category: Clostridium thermocellum]]		[[Category: Clostridium thermocellum]]

OCA at 11:47, 9 November 2011

OCA — Wed, 09 Nov 2011 11:47:21 GMT

←Older revision		Revision as of 11:47, 9 November 2011
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3qde.jpg\|left\|200px]]

-	The ~~entry 3qde~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3qde", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3qde\| PDB=3qde \| SCENE= }}

-	~~Authors: Bianchetti, C.M., Elsen, N.L., Horn, M.K., Fox, B.G., Phillips Jr., G.N.~~	+	===The structure of Cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate===

-	~~Description: The~~ structure of Cellobiose phosphorylase ~~from~~ Clostridium thermocellum ~~in complex with phosphate~~	+
		+	==About this Structure==
		+	[[3qde]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDE OCA].
		+	[[Category: Cellobiose phosphorylase]]
		+	[[Category: Clostridium thermocellum]]
		+	[[Category: Bianchetti, C M.]]
		+	[[Category: Elsen, N L.]]
		+	[[Category: Fox, B G.]]
		+	[[Category: Horn, M K.]]
		+	[[Category: Phillips, G N.]]
		+	[[Category: Cellobiose]]
		+	[[Category: Cellulase]]
		+	[[Category: Phosphate]]
		+	[[Category: Phosphorylase]]
		+	[[Category: Transferase]]

OCA at 06:38, 2 March 2011

OCA — Wed, 02 Mar 2011 06:38:28 GMT

←Older revision		Revision as of 06:38, 2 March 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3qde is ON HOLD	+	The entry 3qde is ON HOLD until Paper Publication

	Authors: Bianchetti, C.M., Elsen, N.L., Horn, M.K., Fox, B.G., Phillips Jr., G.N.		Authors: Bianchetti, C.M., Elsen, N.L., Horn, M.K., Fox, B.G., Phillips Jr., G.N.

	Description: The structure of Cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate		Description: The structure of Cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate

OCA: Protected "3qde" [edit=sysop:move=sysop]

OCA — Wed, 26 Jan 2011 12:46:43 GMT

Protected "3qde" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:46, 26 January 2011