3qg1 - Revision history

OCA at 17:12, 1 November 2023

OCA — Wed, 01 Nov 2023 17:12:20 GMT

←Older revision		Revision as of 17:12, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='3qg1' size='340' side='right'caption='[[3qg1]], [[Resolution\|resolution]] 2.95Å' scene=''>		<StructureSection load='3qg1' size='340' side='right'caption='[[3qg1]], [[Resolution\|resolution]] 2.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3qg1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Pyrococcus_horikoshii~~ Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QG1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QG1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3qg1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QG1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QG1 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MPD:(4S)~~-~~2-METHYL-2~~,~~4-PENTANEDIOL'>MPD</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.95Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>~~[[~~Related_structure~~\|~~Related:~~]]~~</b></td><td class="sblockDat"><div style='overflow: auto~~; ~~max-height: 3em;'>[[1vdz\|1vdz]], [[3i72\|3i72]], [[3i73\|3i73]], [[3i42\|3i42]], [[3ikj\|3ikj]], [[3m4y\|3m4y]], [[3mfy\|3mfy]]</div>~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>atpA, PH1975 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~70601 Pyrococcus horikoshii])</td~~><~~/tr>~~	+
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks'>[https~~:~~//en.wikipedia.org/wiki/H~~(+)-~~transporting_two~~-~~sector_ATPase H(+)~~-~~transporting two-sector ATPase]~~, ~~with EC number [https://www.brenda~~-~~enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qg1 OCA], [https://pdbe.org/3qg1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qg1 RCSB], [https://www.ebi.ac.uk/pdbsum/3qg1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qg1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qg1 OCA], [https://pdbe.org/3qg1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qg1 RCSB], [https://www.ebi.ac.uk/pdbsum/3qg1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qg1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/VATA_PYRHO VATA_PYRHO]] Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit.	+	[https://www.uniprot.org/uniprot/VATA_PYRHO VATA_PYRHO] Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Pyrococcus horikoshii]]	+	[[Category: Pyrococcus horikoshii OT3]]
-	[[Category: Gruber, G]]	+	[[Category: Gruber G]]
-	[[Category: Jeyakanthan, J]]	+	[[Category: Jeyakanthan J]]
-	[[Category: Kumar, A]]	+	[[Category: Kumar A]]
-	[[Category: Manimekalai~~, M S.S~~]]	+	[[Category: Manimekalai MSS]]
-	[[Category: Ragunathan, P]]	+	[[Category: Ragunathan P]]
-	~~[[Category: Atp binding]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 06:07, 8 June 2022

OCA — Wed, 08 Jun 2022 06:07:32 GMT

←Older revision		Revision as of 06:07, 8 June 2022
Line 1:		Line 1:

	==Crystal structure of P-loop G239A mutant of subunit A of the A1AO ATP synthase==		==Crystal structure of P-loop G239A mutant of subunit A of the A1AO ATP synthase==
-	<StructureSection load='3qg1' size='340' side='right' caption='[[3qg1]], [[Resolution\|resolution]] 2.95Å' scene=''>	+	<StructureSection load='3qg1' size='340' side='right'caption='[[3qg1]], [[Resolution\|resolution]] 2.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3qg1]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QG1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3QG1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3qg1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QG1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QG1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1vdz\|1vdz]], [[3i72\|3i72]], [[3i73\|3i73]], [[3i42\|3i42]], [[3ikj\|3ikj]], [[3m4y\|3m4y]], [[3mfy\|3mfy]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1vdz\|1vdz]], [[3i72\|3i72]], [[3i73\|3i73]], [[3i42\|3i42]], [[3ikj\|3ikj]], [[3m4y\|3m4y]], [[3mfy\|3mfy]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atpA, PH1975 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atpA, PH1975 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3qg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qg1 OCA], [~~http~~://pdbe.org/3qg1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3qg1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3qg1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3qg1 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qg1 OCA], [https://pdbe.org/3qg1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qg1 RCSB], [https://www.ebi.ac.uk/pdbsum/3qg1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qg1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/VATA_PYRHO VATA_PYRHO]] Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit.	+	[[https://www.uniprot.org/uniprot/VATA_PYRHO VATA_PYRHO]] Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 21:
	</div>		</div>
	<div class="pdbe-citations 3qg1" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3qg1" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[ATPase 3D structures\|ATPase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
	[[Category: Gruber, G]]		[[Category: Gruber, G]]

OCA at 21:57, 15 November 2017

OCA — Wed, 15 Nov 2017 21:57:27 GMT

←Older revision		Revision as of 21:57, 15 November 2017
Line 21:		Line 21:
	</div>		</div>
	<div class="pdbe-citations 3qg1" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3qg1" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[ATPase\|ATPase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:28, 18 October 2016

OCA — Tue, 18 Oct 2016 07:28:43 GMT

←Older revision		Revision as of 07:28, 18 October 2016
Line 3:		Line 3:
	<StructureSection load='3qg1' size='340' side='right' caption='[[3qg1]], [[Resolution\|resolution]] 2.95Å' scene=''>		<StructureSection load='3qg1' size='340' side='right' caption='[[3qg1]], [[Resolution\|resolution]] 2.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3qg1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrho Pyrho~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QG1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QG1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3qg1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QG1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QG1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1vdz\|1vdz]], [[3i72\|3i72]], [[3i73\|3i73]], [[3i42\|3i42]], [[3ikj\|3ikj]], [[3m4y\|3m4y]], [[3mfy\|3mfy]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1vdz\|1vdz]], [[3i72\|3i72]], [[3i73\|3i73]], [[3i42\|3i42]], [[3ikj\|3ikj]], [[3m4y\|3m4y]], [[3mfy\|3mfy]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atpA, PH1975 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 ~~PYRHO~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atpA, PH1975 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qg1 OCA], [http://pdbe.org/3qg1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3qg1 RCSB], [http://www.ebi.ac.uk/pdbsum/3qg1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3qg1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qg1 OCA], [http://pdbe.org/3qg1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3qg1 RCSB], [http://www.ebi.ac.uk/pdbsum/3qg1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3qg1 ProSAT]</span></td></tr>
Line 28:		Line 28:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pyrho~~]]	+	[[Category: Pyrococcus horikoshii]]
	[[Category: Gruber, G]]		[[Category: Gruber, G]]
	[[Category: Jeyakanthan, J]]		[[Category: Jeyakanthan, J]]

OCA at 12:34, 4 August 2016

OCA — Thu, 04 Aug 2016 12:34:46 GMT

←Older revision		Revision as of 12:34, 4 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of P-loop G239A mutant of subunit A of the A1AO ATP synthase==		==Crystal structure of P-loop G239A mutant of subunit A of the A1AO ATP synthase==
	<StructureSection load='3qg1' size='340' side='right' caption='[[3qg1]], [[Resolution\|resolution]] 2.95Å' scene=''>		<StructureSection load='3qg1' size='340' side='right' caption='[[3qg1]], [[Resolution\|resolution]] 2.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3qg1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrococcus_horikoshii_ot3 Pyrococcus horikoshii ot3~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QG1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QG1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3qg1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrho Pyrho]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QG1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QG1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1vdz\|1vdz]], [[3i72\|3i72]], [[3i73\|3i73]], [[3i42\|3i42]], [[3ikj\|3ikj]], [[3m4y\|3m4y]], [[3mfy\|3mfy]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1vdz\|1vdz]], [[3i72\|3i72]], [[3i73\|3i73]], [[3i42\|3i42]], [[3ikj\|3ikj]], [[3m4y\|3m4y]], [[3mfy\|3mfy]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atpA, PH1975 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 ~~Pyrococcus horikoshii OT3~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atpA, PH1975 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 PYRHO])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qg1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qg1 RCSB], [http://www.ebi.ac.uk/pdbsum/3qg1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qg1 OCA], [http://pdbe.org/3qg1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3qg1 RCSB], [http://www.ebi.ac.uk/pdbsum/3qg1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3qg1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 20:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3qg1" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 26:		Line 28:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pyrococcus horikoshii ot3~~]]	+	[[Category: Pyrho]]
	[[Category: Gruber, G]]		[[Category: Gruber, G]]
	[[Category: Jeyakanthan, J]]		[[Category: Jeyakanthan, J]]

OCA at 09:21, 25 December 2014

OCA — Thu, 25 Dec 2014 09:21:14 GMT

←Older revision		Revision as of 09:21, 25 December 2014
Line 9:		Line 9:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qg1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qg1 RCSB], [http://www.ebi.ac.uk/pdbsum/3qg1 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qg1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qg1 RCSB], [http://www.ebi.ac.uk/pdbsum/3qg1 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/VATA_PYRHO VATA_PYRHO]] Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 10:33, 19 December 2014

OCA — Fri, 19 Dec 2014 10:33:19 GMT

←Older revision		Revision as of 10:33, 19 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3qg1\| PDB=3qg1 \| SCENE= }}~~	+	==Crystal structure of P-loop G239A mutant of subunit A of the A1AO ATP synthase==
-	===Crystal structure of P-loop G239A mutant of subunit A of the A1AO ATP synthase===	+	<StructureSection load='3qg1' size='340' side='right' caption='[[3qg1]], [[Resolution\|resolution]] 2.95Å' scene=''>
-	~~{{ABSTRACT_PUBMED_21925186}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3qg1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii_ot3 Pyrococcus horikoshii ot3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QG1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QG1 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1vdz\|1vdz]], [[3i72\|3i72]], [[3i73\|3i73]], [[3i42\|3i42]], [[3ikj\|3ikj]], [[3m4y\|3m4y]], [[3mfy\|3mfy]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atpA, PH1975 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii OT3])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qg1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qg1 RCSB], [http://www.ebi.ac.uk/pdbsum/3qg1 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The phosphate binding loop (GXXXXGKT(S)) is conserved in several mononucleotide-binding proteins with similar three-dimensional structures. Although variations in other amino acids have been noted, the first glycine and glycine-lysine residues are highly conserved in all enzymes, whose role is yet to be understood. Alanine substitutions for critically positioned glycines-G234, G237, and G239-were generated for the catalytic A-subunit of A-ATP synthase from Pyrococcus horikoshii OT3, and their crystal structures were determined. They showed altered conformation for the phosphate binding loop, with G234A and G237A becoming flat and with G239A taking an intermediate conformation, resulting in the active-site region being closed to nucleotide entry. Furthermore, the essential amino acids S238 and K240, which normally interact with the nucleotide, become inaccessible. These mutant structures demonstrate the role of the strictly conserved glycine residues in guarding the active-site region for nucleotide entrance in archaea-type ATP synthases.

-	~~==Function==~~	+	Conserved Glycine Residues in the P-Loop of ATP Synthases Form a Doorframe for Nucleotide Entrance.,Priya R, Kumar A, Manimekalai MS, Gruber G J Mol Biol. 2011 Sep 8. PMID:21925186<ref>PMID:21925186</ref>
-	~~[[http://www.uniprot.org/uniprot/VATA_PYRHO VATA_PYRHO]] Produces ATP from ADP~~ in the ~~presence~~ of a ~~proton gradient across the membrane~~. ~~The archaeal alpha chain is a catalytic subunit~~.	+

-	~~==About this Structure==~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[3qg1]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pyrococcus_horikoshii_ot3 Pyrococcus horikoshii ot3]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3QG1 OCA].~~	+	</div>

-	==~~Reference~~==	+	==See Also==
-	~~<ref group~~=~~"xtra">PMID:021925186</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	*[[ATPase\|ATPase]]
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Pyrococcus horikoshii ot3]]		[[Category: Pyrococcus horikoshii ot3]]
-	[[Category: Gruber, G.]]	+	[[Category: Gruber, G]]
-	[[Category: Jeyakanthan, J.]]	+	[[Category: Jeyakanthan, J]]
-	[[Category: Kumar, A.]]	+	[[Category: Kumar, A]]
-	[[Category: Manimekalai, M S.S.]]	+	[[Category: Manimekalai, M S.S]]
-	[[Category: Ragunathan, P.]]	+	[[Category: Ragunathan, P]]
	[[Category: Atp binding]]		[[Category: Atp binding]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 08:04, 30 June 2013

OCA — Sun, 30 Jun 2013 08:04:54 GMT

←Older revision		Revision as of 08:04, 30 June 2013
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-	[[Image:3qg1.png\|left\|200px]]
-
	{{STRUCTURE_3qg1\| PDB=3qg1 \| SCENE= }}		{{STRUCTURE_3qg1\| PDB=3qg1 \| SCENE= }}
-
	===Crystal structure of P-loop G239A mutant of subunit A of the A1AO ATP synthase===		===Crystal structure of P-loop G239A mutant of subunit A of the A1AO ATP synthase===
-
	{{ABSTRACT_PUBMED_21925186}}		{{ABSTRACT_PUBMED_21925186}}
		+
		+	==Function==
		+	[[http://www.uniprot.org/uniprot/VATA_PYRHO VATA_PYRHO]] Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit.

	==About this Structure==		==About this Structure==
-	[[3qg1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrococcus_horikoshii~~ Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QG1 OCA].	+	[[3qg1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii_ot3 Pyrococcus horikoshii ot3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QG1 OCA].
-		+
-	~~==See Also==~~	+
-	*[[ATP synthase\|ATP synthase]]	+

	==Reference==		==Reference==
-	<ref group="xtra">PMID:021925186</ref><~~ref~~ group="xtra"~~>PMID:019944110<~~/~~ref><ref group="xtra">PMID:020615420</ref><ref group="xtra">PMID:016627940</ref~~><references ~~group="xtra"~~/>	+	<ref group="xtra">PMID:021925186</ref><references group="xtra"/><references/>
-	[[Category: Pyrococcus horikoshii]]	+	[[Category: Pyrococcus horikoshii ot3]]
	[[Category: Gruber, G.]]		[[Category: Gruber, G.]]
	[[Category: Jeyakanthan, J.]]		[[Category: Jeyakanthan, J.]]

OCA at 15:02, 20 October 2012

OCA — Sat, 20 Oct 2012 15:02:41 GMT

←Older revision		Revision as of 15:02, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3qg1]] is a 1 chain structure ~~of [[ATP synthase]]~~ with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QG1 OCA].	+	[[3qg1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QG1 OCA].

	==See Also==		==See Also==

OCA at 17:05, 26 July 2012

OCA — Thu, 26 Jul 2012 17:05:51 GMT

←Older revision		Revision as of 17:05, 26 July 2012
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-	[[Image:3qg1.~~jpg~~\|left\|200px]]	+	[[Image:3qg1.png\|left\|200px]]

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	{{STRUCTURE_3qg1\| PDB=3qg1 \| SCENE= }}		{{STRUCTURE_3qg1\| PDB=3qg1 \| SCENE= }}

	===Crystal structure of P-loop G239A mutant of subunit A of the A1AO ATP synthase===		===Crystal structure of P-loop G239A mutant of subunit A of the A1AO ATP synthase===

-
-	<!--
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	{{ABSTRACT_PUBMED_21925186}}		{{ABSTRACT_PUBMED_21925186}}

	==About this Structure==		==About this Structure==
-	[[3qg1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QG1 OCA].	+	[[3qg1]] is a 1 chain structure of [[ATP synthase]] with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QG1 OCA].
		+
		+	==See Also==
		+	*[[ATP synthase\|ATP synthase]]

	==Reference==		==Reference==