3qi2 - Revision history

OCA at 11:46, 14 March 2024

OCA — Thu, 14 Mar 2024 11:46:15 GMT

←Older revision		Revision as of 11:46, 14 March 2024
Line 3:		Line 3:
	<StructureSection load='3qi2' size='340' side='right'caption='[[3qi2]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='3qi2' size='340' side='right'caption='[[3qi2]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3qi2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QI2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QI2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3qi2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QI2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QI2 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=GDP:GUANOSINE~~-~~5-DIPHOSPHATE'>GDP</scene>~~, ~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.797Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>~~[[~~Related_structure~~\|~~Related:~~]]~~</b></td><td class="sblockDat"><div style='overflow: auto~~; ~~max-height: 3em;'>[[3qe0\|3qe0]], [[2om2\|2om2]], [[1kjy\|1kjy]], [[1y3a\|1y3a]]</div>~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~GNAI1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=5~~&id=9606 HUMAN])</td~~></tr>	+
-	<~~tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/Heterotrimeric_G-protein_GTPase Heterotrimeric G-protein GTPase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.5.1 3.6.5.1]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qi2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qi2 OCA], [https://pdbe.org/3qi2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qi2 RCSB], [https://www.ebi.ac.uk/pdbsum/3qi2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qi2 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qi2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qi2 OCA], [https://pdbe.org/3qi2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qi2 RCSB], [https://www.ebi.ac.uk/pdbsum/3qi2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qi2 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/GNAI1_HUMAN GNAI1_HUMAN]] Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(i) proteins are involved in hormonal regulation of adenylate cyclase: they inhibit the cyclase in response to beta-adrenergic stimuli. The inactive GDP-bound form prevents the association of RGS14 with centrosomes and is required for the translocation of RGS14 from the cytoplasm to the plasma membrane. May play a role in cell division.<ref>PMID:17635935</ref> <ref>PMID:17264214</ref> [[https://www.uniprot.org/uniprot/RGS14_HUMAN RGS14_HUMAN]] Acts as a regulator of G protein signaling (RGS). Modulates G protein alpha subunits nucleotide exchange and hydrolysis activities by functioning either as a GTPase-activating protein (GAP), thereby driving G protein alpha subunits into their inactive GDP-bound form, or as a GDP-dissociation inhibitor (GDI). Confers GDI activity on G(i) alpha subunits GNAI1 and GNAI3, but not G(o) alpha subunit GNAO1 and G(i) alpha subunit GNAI2. Confers GAP activity on G(o) alpha subunit GNAI0 and G(i) alpha subunits GNAI2 and GNAI3. May act as a scaffold integrating G protein and Ras/Raf MAPkinase signaling pathways. Inhibits platelet-derived growth factor (PDGF)-stimulated ERK1/ERK2 phosphorylation; a process depending on its interaction with HRAS1 and that is reversed by G(i) alpha subunit GNAI1. Acts as a positive modulator of microtubule polymerisation and spindle organization through a G(i)-alpha-dependent mechanism. Plays a role in cell division. Probably required for the nerve growth factor (NGF)-mediated neurite outgrowth. May be involved in visual memory processing capacity and hippocampal-based learning and memory.<ref>PMID:15917656</ref> <ref>PMID:17635935</ref>	+	[https://www.uniprot.org/uniprot/GNAI1_HUMAN GNAI1_HUMAN] Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(i) proteins are involved in hormonal regulation of adenylate cyclase: they inhibit the cyclase in response to beta-adrenergic stimuli. The inactive GDP-bound form prevents the association of RGS14 with centrosomes and is required for the translocation of RGS14 from the cytoplasm to the plasma membrane. May play a role in cell division.<ref>PMID:17635935</ref> <ref>PMID:17264214</ref>
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	Heterotrimeric G-proteins are molecular switches integral to a panoply of different physiological responses that many organisms make to environmental cues. The switch from inactive to active Galphabetagamma heterotrimer relies on nucleotide cycling by the Galpha subunit: exchange of GTP for GDP activates Galpha, whereas its intrinsic enzymatic activity catalyzes GTP hydrolysis to GDP and inorganic phosphate, thereby reverting Galpha to its inactive state. In several genetic studies of filamentous fungi, such as the rice blast fungus Magnaporthe oryzae, a G42R mutation in the phosphate-binding loop of Galpha subunits is assumed to be GTPase-deficient and thus constitutively active. Here, we demonstrate that Galpha(G42R) mutants are not GTPase deficient, but rather incapable of achieving the activated conformation. Two crystal structure models suggest that Arg-42 prevents a typical switch region conformational change upon Galpha(i1)(G42R) binding to GDP.AlF(4) (-) or GTP, but rotameric flexibility at this locus allows for unperturbed GTP hydrolysis. Galpha(G42R) mutants do not engage the active state-selective peptide KB-1753 nor RGS domains with high affinity, but instead favor interaction with Gbetagamma and GoLoco motifs in any nucleotide state. The corresponding Galpha(q)(G48R) mutant is not constitutively active in cells and responds poorly to aluminum tetrafluoride activation. Comparative analyses of M. oryzae strains harboring either G42R or GTPase-deficient Q/L mutations in the Galpha subunits MagA or MagB illustrate functional differences in environmental cue processing and intracellular signaling outcomes between these two Galpha mutants, thus demonstrating the in vivo functional divergence of G42R and activating G-protein mutants.	+
-		+
-	A P-loop Mutation in Galpha Subunits Prevents Transition to the Active State: Implications for G-protein Signaling in Fungal Pathogenesis.,Bosch DE, Willard FS, Ramanujam R, Kimple AJ, Willard MD, Naqvi NI, Siderovski DP PLoS Pathog. 2012 Feb;8(2):e1002553. Epub 2012 Feb 23. PMID:22383884<ref>PMID:22383884</ref>	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class="pdbe-citations 3qi2" style="background-color:#fffaf0;"></div~~>	+
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Heterotrimeric G-protein GTPase]]~~	+	[[Category: Homo sapiens]]
-	~~[[Category: Human~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bosch~~, D E~~]]	+	[[Category: Bosch DE]]
-	[[Category: Kimple~~, A J~~]]	+	[[Category: Kimple AJ]]
-	[[Category: Miley~~, M J~~]]	+	[[Category: Miley MJ]]
-	[[Category: Siderovski~~, D P~~]]	+	[[Category: Siderovski DP]]
-	[[Category: Willard~~, F S]]~~	+	[[Category: Willard FS]]
-	~~[[Category: Adp-ribosylation]]~~	+
-	~~[[Category: All-helical domain]]~~	+
-	~~[[Category: Arginine finger]]~~	+
-	~~[[Category: Goloco motif]]~~	+
-	~~[[Category: Gtp binding]]~~	+
-	~~[[Category: Guanine nucleotide dissociation inhibitor]]~~	+
-	~~[[Category: Lipoprotein]]~~	+
-	~~[[Category: Nucleotide binding]]~~	+
-	~~[[Category: Ras-like domain]]~~	+
-	~~[[Category: Rgs14 goloco]]~~	+
-	~~[[Category: Signaling protein]]~~	+
-	~~[[Category: Transducer~~]]	+

OCA at 06:09, 8 June 2022

OCA — Wed, 08 Jun 2022 06:09:46 GMT

←Older revision		Revision as of 06:09, 8 June 2022
Line 1:		Line 1:
		+
	==A Galpha P-loop mutation prevents transition to the activated state: G42R bound to RGS14 GoLoco==		==A Galpha P-loop mutation prevents transition to the activated state: G42R bound to RGS14 GoLoco==
-	<StructureSection load='3qi2' size='340' side='right' caption='[[3qi2]], [[Resolution\|resolution]] 2.80Å' scene=''>	+	<StructureSection load='3qi2' size='340' side='right'caption='[[3qi2]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3qi2]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Homo_sapiens Homo sapiens~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QI2 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3QI2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3qi2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QI2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QI2 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3qe0\|3qe0]], [[2om2\|2om2]], [[1kjy\|1kjy]], [[1y3a\|1y3a]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3qe0\|3qe0]], [[2om2\|2om2]], [[1kjy\|1kjy]], [[1y3a\|1y3a]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GNAI1 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 ~~Homo sapiens~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GNAI1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Heterotrimeric_G-protein_GTPase Heterotrimeric G-protein GTPase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.5.1 3.6.5.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Heterotrimeric_G-protein_GTPase Heterotrimeric G-protein GTPase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.5.1 3.6.5.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3qi2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qi2 OCA], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3qi2 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3qi2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qi2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qi2 OCA], [https://pdbe.org/3qi2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qi2 RCSB], [https://www.ebi.ac.uk/pdbsum/3qi2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qi2 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/GNAI1_HUMAN GNAI1_HUMAN]] Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(i) proteins are involved in hormonal regulation of adenylate cyclase: they inhibit the cyclase in response to beta-adrenergic stimuli. The inactive GDP-bound form prevents the association of RGS14 with centrosomes and is required for the translocation of RGS14 from the cytoplasm to the plasma membrane. May play a role in cell division.<ref>PMID:17635935</ref> <ref>PMID:17264214</ref> [[~~http~~://www.uniprot.org/uniprot/RGS14_HUMAN RGS14_HUMAN]] Acts as a regulator of G protein signaling (RGS). Modulates G protein alpha subunits nucleotide exchange and hydrolysis activities by functioning either as a GTPase-activating protein (GAP), thereby driving G protein alpha subunits into their inactive GDP-bound form, or as a GDP-dissociation inhibitor (GDI). Confers GDI activity on G(i) alpha subunits GNAI1 and GNAI3, but not G(o) alpha subunit GNAO1 and G(i) alpha subunit GNAI2. Confers GAP activity on G(o) alpha subunit GNAI0 and G(i) alpha subunits GNAI2 and GNAI3. May act as a scaffold integrating G protein and Ras/Raf MAPkinase signaling pathways. Inhibits platelet-derived growth factor (PDGF)-stimulated ERK1/ERK2 phosphorylation; a process depending on its interaction with HRAS1 and that is reversed by G(i) alpha subunit GNAI1. Acts as a positive modulator of microtubule polymerisation and spindle organization through a G(i)-alpha-dependent mechanism. Plays a role in cell division. Probably required for the nerve growth factor (NGF)-mediated neurite outgrowth. May be involved in visual memory processing capacity and hippocampal-based learning and memory.<ref>PMID:15917656</ref> <ref>PMID:17635935</ref>	+	[[https://www.uniprot.org/uniprot/GNAI1_HUMAN GNAI1_HUMAN]] Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(i) proteins are involved in hormonal regulation of adenylate cyclase: they inhibit the cyclase in response to beta-adrenergic stimuli. The inactive GDP-bound form prevents the association of RGS14 with centrosomes and is required for the translocation of RGS14 from the cytoplasm to the plasma membrane. May play a role in cell division.<ref>PMID:17635935</ref> <ref>PMID:17264214</ref> [[https://www.uniprot.org/uniprot/RGS14_HUMAN RGS14_HUMAN]] Acts as a regulator of G protein signaling (RGS). Modulates G protein alpha subunits nucleotide exchange and hydrolysis activities by functioning either as a GTPase-activating protein (GAP), thereby driving G protein alpha subunits into their inactive GDP-bound form, or as a GDP-dissociation inhibitor (GDI). Confers GDI activity on G(i) alpha subunits GNAI1 and GNAI3, but not G(o) alpha subunit GNAO1 and G(i) alpha subunit GNAI2. Confers GAP activity on G(o) alpha subunit GNAI0 and G(i) alpha subunits GNAI2 and GNAI3. May act as a scaffold integrating G protein and Ras/Raf MAPkinase signaling pathways. Inhibits platelet-derived growth factor (PDGF)-stimulated ERK1/ERK2 phosphorylation; a process depending on its interaction with HRAS1 and that is reversed by G(i) alpha subunit GNAI1. Acts as a positive modulator of microtubule polymerisation and spindle organization through a G(i)-alpha-dependent mechanism. Plays a role in cell division. Probably required for the nerve growth factor (NGF)-mediated neurite outgrowth. May be involved in visual memory processing capacity and hippocampal-based learning and memory.<ref>PMID:15917656</ref> <ref>PMID:17635935</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 19:		Line 20:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
-		+	<div class="pdbe-citations 3qi2" style="background-color:#fffaf0;"></div>
-	==~~See Also==~~	+
-	*[[Guanine nucleotide-binding protein\|Guanine nucleotide-~~binding protein]]~~	+
	== References ==		== References ==
	<references/>		<references/>
Line 27:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Heterotrimeric G-protein GTPase]]		[[Category: Heterotrimeric G-protein GTPase]]
-	[[Category: ~~Homo sapiens~~]]	+	[[Category: Human]]
		+	[[Category: Large Structures]]
	[[Category: Bosch, D E]]		[[Category: Bosch, D E]]
	[[Category: Kimple, A J]]		[[Category: Kimple, A J]]

OCA at 15:26, 24 December 2014

OCA — Wed, 24 Dec 2014 15:26:37 GMT

←Older revision		Revision as of 15:26, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3qi2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QI2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QI2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3qi2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QI2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QI2 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3qe0\|3qe0]], [[2om2\|2om2]], [[1kjy\|1kjy]], [[1y3a\|1y3a]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3qe0\|3qe0]], [[2om2\|2om2]], [[1kjy\|1kjy]], [[1y3a\|1y3a]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GNAI1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GNAI1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Heterotrimeric_G-protein_GTPase Heterotrimeric G-protein GTPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.5.1 3.6.5.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Heterotrimeric_G-protein_GTPase Heterotrimeric G-protein GTPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.5.1 3.6.5.1] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qi2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qi2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qi2 RCSB], [http://www.ebi.ac.uk/pdbsum/3qi2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qi2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qi2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qi2 RCSB], [http://www.ebi.ac.uk/pdbsum/3qi2 PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/GNAI1_HUMAN GNAI1_HUMAN]] Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(i) proteins are involved in hormonal regulation of adenylate cyclase: they inhibit the cyclase in response to beta-adrenergic stimuli. The inactive GDP-bound form prevents the association of RGS14 with centrosomes and is required for the translocation of RGS14 from the cytoplasm to the plasma membrane. May play a role in cell division.<ref>PMID:17635935</ref> <ref>PMID:17264214</ref> [[http://www.uniprot.org/uniprot/RGS14_HUMAN RGS14_HUMAN]] Acts as a regulator of G protein signaling (RGS). Modulates G protein alpha subunits nucleotide exchange and hydrolysis activities by functioning either as a GTPase-activating protein (GAP), thereby driving G protein alpha subunits into their inactive GDP-bound form, or as a GDP-dissociation inhibitor (GDI). Confers GDI activity on G(i) alpha subunits GNAI1 and GNAI3, but not G(o) alpha subunit GNAO1 and G(i) alpha subunit GNAI2. Confers GAP activity on G(o) alpha subunit GNAI0 and G(i) alpha subunits GNAI2 and GNAI3. May act as a scaffold integrating G protein and Ras/Raf MAPkinase signaling pathways. Inhibits platelet-derived growth factor (PDGF)-stimulated ERK1/ERK2 phosphorylation; a process depending on its interaction with HRAS1 and that is reversed by G(i) alpha subunit GNAI1. Acts as a positive modulator of microtubule polymerisation and spindle organization through a G(i)-alpha-dependent mechanism. Plays a role in cell division. Probably required for the nerve growth factor (NGF)-mediated neurite outgrowth. May be involved in visual memory processing capacity and hippocampal-based learning and memory.<ref>PMID:15917656</ref> <ref>PMID:17635935</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 26:		Line 28:
	[[Category: Heterotrimeric G-protein GTPase]]		[[Category: Heterotrimeric G-protein GTPase]]
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
-	[[Category: Bosch, D E.]]	+	[[Category: Bosch, D E]]
-	[[Category: Kimple, A J.]]	+	[[Category: Kimple, A J]]
-	[[Category: Miley, M J.]]	+	[[Category: Miley, M J]]
-	[[Category: Siderovski, D P.]]	+	[[Category: Siderovski, D P]]
-	[[Category: Willard, F S.]]	+	[[Category: Willard, F S]]
	[[Category: Adp-ribosylation]]		[[Category: Adp-ribosylation]]
	[[Category: All-helical domain]]		[[Category: All-helical domain]]

OCA at 07:05, 9 June 2014

OCA — Mon, 09 Jun 2014 07:05:11 GMT

←Older revision		Revision as of 07:05, 9 June 2014
Line 1:		Line 1:
-	[[~~Image:~~3qi2.~~png~~\|~~left~~\|~~200px~~]]	+	==A Galpha P-loop mutation prevents transition to the activated state: G42R bound to RGS14 GoLoco==
		+	<StructureSection load='3qi2' size='340' side='right' caption='[[3qi2]], [[Resolution\|resolution]] 2.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3qi2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QI2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QI2 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3qe0\|3qe0]], [[2om2\|2om2]], [[1kjy\|1kjy]], [[1y3a\|1y3a]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GNAI1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Heterotrimeric_G-protein_GTPase Heterotrimeric G-protein GTPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.5.1 3.6.5.1] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qi2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qi2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qi2 RCSB], [http://www.ebi.ac.uk/pdbsum/3qi2 PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Heterotrimeric G-proteins are molecular switches integral to a panoply of different physiological responses that many organisms make to environmental cues. The switch from inactive to active Galphabetagamma heterotrimer relies on nucleotide cycling by the Galpha subunit: exchange of GTP for GDP activates Galpha, whereas its intrinsic enzymatic activity catalyzes GTP hydrolysis to GDP and inorganic phosphate, thereby reverting Galpha to its inactive state. In several genetic studies of filamentous fungi, such as the rice blast fungus Magnaporthe oryzae, a G42R mutation in the phosphate-binding loop of Galpha subunits is assumed to be GTPase-deficient and thus constitutively active. Here, we demonstrate that Galpha(G42R) mutants are not GTPase deficient, but rather incapable of achieving the activated conformation. Two crystal structure models suggest that Arg-42 prevents a typical switch region conformational change upon Galpha(i1)(G42R) binding to GDP.AlF(4) (-) or GTP, but rotameric flexibility at this locus allows for unperturbed GTP hydrolysis. Galpha(G42R) mutants do not engage the active state-selective peptide KB-1753 nor RGS domains with high affinity, but instead favor interaction with Gbetagamma and GoLoco motifs in any nucleotide state. The corresponding Galpha(q)(G48R) mutant is not constitutively active in cells and responds poorly to aluminum tetrafluoride activation. Comparative analyses of M. oryzae strains harboring either G42R or GTPase-deficient Q/L mutations in the Galpha subunits MagA or MagB illustrate functional differences in environmental cue processing and intracellular signaling outcomes between these two Galpha mutants, thus demonstrating the in vivo functional divergence of G42R and activating G-protein mutants.

-	~~{{STRUCTURE_3qi2\| PDB=3qi2 \| SCENE= }}~~	+	A P-loop Mutation in Galpha Subunits Prevents Transition to the Active State: Implications for G-protein Signaling in Fungal Pathogenesis.,Bosch DE, Willard FS, Ramanujam R, Kimple AJ, Willard MD, Naqvi NI, Siderovski DP PLoS Pathog. 2012 Feb;8(2):e1002553. Epub 2012 Feb 23. PMID:22383884<ref>PMID:22383884</ref>

-	~~===A Galpha P-loop mutation prevents transition to~~ the ~~activated state: G42R bound to RGS14 GoLoco===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-	~~{{ABSTRACT_PUBMED_22383884}}~~	+	==See Also==
-		+	*[[Guanine nucleotide-binding protein\|Guanine nucleotide-binding protein]]
-	==~~About this Structure~~==	+	== References ==
-	[[~~3qi2~~]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QI2 OCA].	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:022383884<~~/~~ref~~><~~ref group="xtra">PMID:017603074</ref><ref group="xtra">PMID:011976690</ref><references group="xtra"~~/>	+
	[[Category: Heterotrimeric G-protein GTPase]]		[[Category: Heterotrimeric G-protein GTPase]]
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]

OCA at 10:24, 8 August 2012

OCA — Wed, 08 Aug 2012 10:24:13 GMT

←Older revision		Revision as of 10:24, 8 August 2012
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	[[Image:3qi2.png\|left\|200px]]		[[Image:3qi2.png\|left\|200px]]

-	<!--
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-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
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-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3qi2\| PDB=3qi2 \| SCENE= }}		{{STRUCTURE_3qi2\| PDB=3qi2 \| SCENE= }}

	===A Galpha P-loop mutation prevents transition to the activated state: G42R bound to RGS14 GoLoco===		===A Galpha P-loop mutation prevents transition to the activated state: G42R bound to RGS14 GoLoco===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_22383884}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 22383884 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_22383884}}		{{ABSTRACT_PUBMED_22383884}}

OCA at 05:48, 14 March 2012

OCA — Wed, 14 Mar 2012 05:48:17 GMT

←Older revision		Revision as of 05:48, 14 March 2012
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-	~~'''Unreleased structure'''~~	+	[[Image:3qi2.png\|left\|200px]]

-	The ~~entry 3qi2~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3qi2", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3qi2\| PDB=3qi2 \| SCENE= }}

-	~~Authors: Bosch, D.E., Willard, F.S., Kimple,~~ A~~.J., Miley, M.J., Siderovski, D.~~P.	+	===A Galpha P-loop mutation prevents transition to the activated state: G42R bound to RGS14 GoLoco===

-	~~Description~~: A ~~Galpha~~ P-~~loop mutation prevents transition to the activated state~~: ~~G42R bound to RGS14 GoLoco~~	+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_22383884}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 22383884 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_22383884}}
		+
		+	==About this Structure==
		+	[[3qi2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QI2 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:022383884</ref><ref group="xtra">PMID:017603074</ref><ref group="xtra">PMID:011976690</ref><references group="xtra"/>
		+	[[Category: Heterotrimeric G-protein GTPase]]
		+	[[Category: Homo sapiens]]
		+	[[Category: Bosch, D E.]]
		+	[[Category: Kimple, A J.]]
		+	[[Category: Miley, M J.]]
		+	[[Category: Siderovski, D P.]]
		+	[[Category: Willard, F S.]]
		+	[[Category: Adp-ribosylation]]
		+	[[Category: All-helical domain]]
		+	[[Category: Arginine finger]]
		+	[[Category: Goloco motif]]
		+	[[Category: Gtp binding]]
		+	[[Category: Guanine nucleotide dissociation inhibitor]]
		+	[[Category: Lipoprotein]]
		+	[[Category: Nucleotide binding]]
		+	[[Category: Ras-like domain]]
		+	[[Category: Rgs14 goloco]]
		+	[[Category: Signaling protein]]
		+	[[Category: Transducer]]

OCA at 08:35, 6 April 2011

OCA — Wed, 06 Apr 2011 08:35:59 GMT

←Older revision		Revision as of 08:35, 6 April 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3qi2 is ON HOLD	+	The entry 3qi2 is ON HOLD until Paper Publication

	Authors: Bosch, D.E., Willard, F.S., Kimple, A.J., Miley, M.J., Siderovski, D.P.		Authors: Bosch, D.E., Willard, F.S., Kimple, A.J., Miley, M.J., Siderovski, D.P.

	Description: A Galpha P-loop mutation prevents transition to the activated state: G42R bound to RGS14 GoLoco		Description: A Galpha P-loop mutation prevents transition to the activated state: G42R bound to RGS14 GoLoco

OCA: Protected "3qi2" [edit=sysop:move=sysop]

OCA — Wed, 02 Feb 2011 06:13:14 GMT

Protected "3qi2" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:13, 2 February 2011

OCA: New page: '''Unreleased structure''' The entry 3qi2 is ON HOLD Authors: Bosch, D.E., Willard, F.S., Kimple, A.J., Miley, M.J., Siderovski, D.P. Description: A Galpha P-loop mutation prevents tra...

OCA — Wed, 02 Feb 2011 06:13:13 GMT

New page: '''Unreleased structure''' The entry 3qi2 is ON HOLD Authors: Bosch, D.E., Willard, F.S., Kimple, A.J., Miley, M.J., Siderovski, D.P. Description: A Galpha P-loop mutation prevents tra...

New page

'''Unreleased structure'''

The entry 3qi2 is ON HOLD

Authors: Bosch, D.E., Willard, F.S., Kimple, A.J., Miley, M.J., Siderovski, D.P.

Description: A Galpha P-loop mutation prevents transition to the activated state: G42R bound to RGS14 GoLoco