3qvm - Revision history

OCA at 12:00, 14 March 2024

OCA — Thu, 14 Mar 2024 12:00:19 GMT

←Older revision		Revision as of 12:00, 14 March 2024
Line 10:		Line 10:
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/U3KRE9_OLEAN U3KRE9_OLEAN]		[https://www.uniprot.org/uniprot/U3KRE9_OLEAN U3KRE9_OLEAN]
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Ubiquitous bacteria from the genus Oleispira drive oil degradation in the largest environment on Earth, the cold and deep sea. Here we report the genome sequence of Oleispira antarctica and show that compared with Alcanivorax borkumensis-the paradigm of mesophilic hydrocarbonoclastic bacteria-O. antarctica has a larger genome that has witnessed massive gene-transfer events. We identify an array of alkane monooxygenases, osmoprotectants, siderophores and micronutrient-scavenging pathways. We also show that at low temperatures, the main protein-folding machine Cpn60 functions as a single heptameric barrel that uses larger proteins as substrates compared with the classical double-barrel structure observed at higher temperatures. With 11 protein crystal structures, we further report the largest set of structures from one psychrotolerant organism. The most common structural feature is an increased content of surface-exposed negatively charged residues compared to their mesophilic counterparts. Our findings are relevant in the context of microbial cold-adaptation mechanisms and the development of strategies for oil-spill mitigation in cold environments.
-
-	Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica.,Kube M, Chernikova TN, Al-Ramahi Y, Beloqui A, Lopez-Cortez N, Guazzaroni ME, Heipieper HJ, Klages S, Kotsyurbenko OR, Langer I, Nechitaylo TY, Lunsdorf H, Fernandez M, Juarez S, Ciordia S, Singer A, Kagan O, Egorova O, Alain Petit P, Stogios P, Kim Y, Tchigvintsev A, Flick R, Denaro R, Genovese M, Albar JP, Reva ON, Martinez-Gomariz M, Tran H, Ferrer M, Savchenko A, Yakunin AF, Yakimov MM, Golyshina OV, Reinhardt R, Golyshin PN Nat Commun. 2013 Jul 23;4:2156. doi: 10.1038/ncomms3156. PMID:23877221<ref>PMID:23877221</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 3qvm" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 08:13, 6 December 2023

OCA — Wed, 06 Dec 2023 08:13:45 GMT

←Older revision		Revision as of 08:13, 6 December 2023
Line 3:		Line 3:
	<StructureSection load='3qvm' size='340' side='right'caption='[[3qvm]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3qvm' size='340' side='right'caption='[[3qvm]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3qvm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Dsm_14852 Dsm 14852~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QVM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QVM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3qvm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Oleispira_antarctica Oleispira antarctica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QVM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QVM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:~~SODIUM+ION~~'>NA</scene>, <scene name='pdbligand=~~SO4~~:~~SULFATE~~+ION'>~~SO4~~</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.998Å</td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene>~~</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Olei00960 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=188908 DSM 14852])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qvm OCA], [https://pdbe.org/3qvm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qvm RCSB], [https://www.ebi.ac.uk/pdbsum/3qvm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qvm ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qvm OCA], [https://pdbe.org/3qvm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qvm RCSB], [https://www.ebi.ac.uk/pdbsum/3qvm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qvm ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/U3KRE9_OLEAN U3KRE9_OLEAN]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Dsm 14852]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Edwards~~, A M~~]]	+	[[Category: Oleispira antarctica]]
-	[[Category: Joachimiak, A]]	+	[[Category: Edwards AM]]
-	[[Category: Kagan, O]]	+	[[Category: Joachimiak A]]
-	[[Category: Kim, Y]]	+	[[Category: Kagan O]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Kim Y]]
-	[[Category: Savchenko, A]]	+	[[Category: Savchenko A]]
-	[[Category: Singer~~, A U]]~~	+	[[Category: Singer AU]]
-	~~[[Category: Alpha-beta hydrolase fold]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Mcsg]]~~	+
-	~~[[Category: Psi-biology~~]]	+

OCA at 05:38, 15 June 2022

OCA — Wed, 15 Jun 2022 05:38:12 GMT

←Older revision		Revision as of 05:38, 15 June 2022
Line 3:		Line 3:
	<StructureSection load='3qvm' size='340' side='right'caption='[[3qvm]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3qvm' size='340' side='right'caption='[[3qvm]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3qvm]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Dsm_14852 Dsm 14852]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QVM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3QVM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3qvm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Dsm_14852 Dsm 14852]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QVM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QVM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Olei00960 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=188908 DSM 14852])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Olei00960 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=188908 DSM 14852])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3qvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qvm OCA], [~~http~~://pdbe.org/3qvm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3qvm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3qvm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3qvm ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qvm OCA], [https://pdbe.org/3qvm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qvm RCSB], [https://www.ebi.ac.uk/pdbsum/3qvm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qvm ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 11:35, 17 July 2019

OCA — Wed, 17 Jul 2019 11:35:14 GMT

←Older revision		Revision as of 11:35, 17 July 2019
Line 1:		Line 1:

	==The structure of olei00960, a hydrolase from Oleispira antarctica==		==The structure of olei00960, a hydrolase from Oleispira antarctica==
-	<StructureSection load='3qvm' size='340' side='right' caption='[[3qvm]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='3qvm' size='340' side='right'caption='[[3qvm]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3qvm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Dsm_14852 Dsm 14852]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QVM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QVM FirstGlance]. <br>		<table><tr><td colspan='2'>[[3qvm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Dsm_14852 Dsm 14852]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QVM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QVM FirstGlance]. <br>
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Dsm 14852]]		[[Category: Dsm 14852]]
		+	[[Category: Large Structures]]
	[[Category: Edwards, A M]]		[[Category: Edwards, A M]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]

OCA at 01:50, 5 August 2016

OCA — Fri, 05 Aug 2016 01:50:50 GMT

←Older revision		Revision as of 01:50, 5 August 2016
Line 1:		Line 1:
		+
	==The structure of olei00960, a hydrolase from Oleispira antarctica==		==The structure of olei00960, a hydrolase from Oleispira antarctica==
	<StructureSection load='3qvm' size='340' side='right' caption='[[3qvm]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3qvm' size='340' side='right' caption='[[3qvm]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3qvm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Oleispira_antarctica Oleispira antarctica~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QVM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QVM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3qvm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Dsm_14852 Dsm 14852]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QVM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QVM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Olei00960 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=188908 ~~Oleispira antarctica~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Olei00960 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=188908 DSM 14852])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qvm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qvm RCSB], [http://www.ebi.ac.uk/pdbsum/3qvm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qvm OCA], [http://pdbe.org/3qvm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3qvm RCSB], [http://www.ebi.ac.uk/pdbsum/3qvm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3qvm ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3qvm" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Oleispira antarctica~~]]	+	[[Category: Dsm 14852]]
	[[Category: Edwards, A M]]		[[Category: Edwards, A M]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]

OCA at 10:35, 19 December 2014

OCA — Fri, 19 Dec 2014 10:35:50 GMT

←Older revision		Revision as of 10:35, 19 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3qvm\| PDB=3qvm \| SCENE= }}~~	+	==The structure of olei00960, a hydrolase from Oleispira antarctica==
-	===The structure of olei00960, a hydrolase from Oleispira antarctica===	+	<StructureSection load='3qvm' size='340' side='right' caption='[[3qvm]], [[Resolution\|resolution]] 2.00Å' scene=''>
-	~~{{ABSTRACT_PUBMED_23877221}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3qvm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Oleispira_antarctica Oleispira antarctica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QVM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QVM FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Olei00960 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=188908 Oleispira antarctica])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qvm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qvm RCSB], [http://www.ebi.ac.uk/pdbsum/3qvm PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Ubiquitous bacteria from the genus Oleispira drive oil degradation in the largest environment on Earth, the cold and deep sea. Here we report the genome sequence of Oleispira antarctica and show that compared with Alcanivorax borkumensis-the paradigm of mesophilic hydrocarbonoclastic bacteria-O. antarctica has a larger genome that has witnessed massive gene-transfer events. We identify an array of alkane monooxygenases, osmoprotectants, siderophores and micronutrient-scavenging pathways. We also show that at low temperatures, the main protein-folding machine Cpn60 functions as a single heptameric barrel that uses larger proteins as substrates compared with the classical double-barrel structure observed at higher temperatures. With 11 protein crystal structures, we further report the largest set of structures from one psychrotolerant organism. The most common structural feature is an increased content of surface-exposed negatively charged residues compared to their mesophilic counterparts. Our findings are relevant in the context of microbial cold-adaptation mechanisms and the development of strategies for oil-spill mitigation in cold environments.

-	~~==About this Structure==~~	+	Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica.,Kube M, Chernikova TN, Al-Ramahi Y, Beloqui A, Lopez-Cortez N, Guazzaroni ME, Heipieper HJ, Klages S, Kotsyurbenko OR, Langer I, Nechitaylo TY, Lunsdorf H, Fernandez M, Juarez S, Ciordia S, Singer A, Kagan O, Egorova O, Alain Petit P, Stogios P, Kim Y, Tchigvintsev A, Flick R, Denaro R, Genovese M, Albar JP, Reva ON, Martinez-Gomariz M, Tran H, Ferrer M, Savchenko A, Yakunin AF, Yakimov MM, Golyshina OV, Reinhardt R, Golyshin PN Nat Commun. 2013 Jul 23;4:2156. doi: 10.1038/ncomms3156. PMID:23877221<ref>PMID:23877221</ref>
-	~~[[3qvm]] is a 2 chain structure with~~ sequence ~~from [http://en.wikipedia.org/wiki/Oleispira_antarctica~~ Oleispira antarctica]. ~~Full crystallographic information is available from [http~~:~~//oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=3QVM OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:023877221</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Oleispira antarctica]]		[[Category: Oleispira antarctica]]
-	[[Category: Edwards, A M.]]	+	[[Category: Edwards, A M]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: Kagan, O.]]	+	[[Category: Kagan, O]]
-	[[Category: Kim, Y.]]	+	[[Category: Kim, Y]]
-	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Savchenko, A.]]	+	[[Category: Savchenko, A]]
-	[[Category: Singer, A U.]]	+	[[Category: Singer, A U]]
	[[Category: Alpha-beta hydrolase fold]]		[[Category: Alpha-beta hydrolase fold]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
-	[[Category: Midwest center for structural genomic]]
	[[Category: Psi-biology]]		[[Category: Psi-biology]]
-	[[Category: Structural genomic]]

OCA at 19:29, 7 August 2013

OCA — Wed, 07 Aug 2013 19:29:11 GMT

←Older revision		Revision as of 19:29, 7 August 2013
Line 1:		Line 1:
	{{STRUCTURE_3qvm\| PDB=3qvm \| SCENE= }}		{{STRUCTURE_3qvm\| PDB=3qvm \| SCENE= }}
	===The structure of olei00960, a hydrolase from Oleispira antarctica===		===The structure of olei00960, a hydrolase from Oleispira antarctica===
		+	{{ABSTRACT_PUBMED_23877221}}

	==About this Structure==		==About this Structure==
	[[3qvm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Oleispira_antarctica Oleispira antarctica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QVM OCA].		[[3qvm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Oleispira_antarctica Oleispira antarctica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QVM OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:023877221</ref><references group="xtra"/><references/>
	[[Category: Oleispira antarctica]]		[[Category: Oleispira antarctica]]
	[[Category: Edwards, A M.]]		[[Category: Edwards, A M.]]

OCA at 08:33, 8 May 2013

OCA — Wed, 08 May 2013 08:33:44 GMT

←Older revision		Revision as of 08:33, 8 May 2013
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-	[[Image:3qvm.jpg\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3qvm", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3qvm\| PDB=3qvm \| SCENE= }}		{{STRUCTURE_3qvm\| PDB=3qvm \| SCENE= }}
-
	===The structure of olei00960, a hydrolase from Oleispira antarctica===		===The structure of olei00960, a hydrolase from Oleispira antarctica===
-

	==About this Structure==		==About this Structure==
Line 22:		Line 12:
	[[Category: Savchenko, A.]]		[[Category: Savchenko, A.]]
	[[Category: Singer, A U.]]		[[Category: Singer, A U.]]
		+	[[Category: Alpha-beta hydrolase fold]]
		+	[[Category: Hydrolase]]
		+	[[Category: Mcsg]]
		+	[[Category: Midwest center for structural genomic]]
		+	[[Category: Psi-biology]]
		+	[[Category: Structural genomic]]

OCA at 05:26, 13 April 2011

OCA — Wed, 13 Apr 2011 05:26:42 GMT

←Older revision		Revision as of 05:26, 13 April 2011
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-	~~'''Unreleased structure'''~~	+	[[Image:3qvm.jpg\|left\|200px]]

-	The ~~entry 3qvm~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3qvm", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3qvm\| PDB=3qvm \| SCENE= }}

-	~~Authors: Singer~~, ~~A.U., Kagan, O., Kim, Y., Edwards, A.M., Joachimiak, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)~~	+	===The structure of olei00960, a hydrolase from Oleispira antarctica===

-	~~Description: The structure of olei00960,~~ a ~~hydrolase~~ from Oleispira antarctica	+
		+	==About this Structure==
		+	[[3qvm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Oleispira_antarctica Oleispira antarctica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QVM OCA].
		+	[[Category: Oleispira antarctica]]
		+	[[Category: Edwards, A M.]]
		+	[[Category: Joachimiak, A.]]
		+	[[Category: Kagan, O.]]
		+	[[Category: Kim, Y.]]
		+	[[Category: MCSG, Midwest Center for Structural Genomics.]]
		+	[[Category: Savchenko, A.]]
		+	[[Category: Singer, A U.]]

OCA at 08:04, 16 March 2011

OCA — Wed, 16 Mar 2011 08:04:26 GMT

←Older revision		Revision as of 08:04, 16 March 2011
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	The entry 3qvm is ON HOLD		The entry 3qvm is ON HOLD

-	Authors: Singer, A.U., Kagan, O., Kim, Y., Edwards, A.M., Joachimiak, A.,, Savchenko, A., Midwest Center for Structural Genomics (MCSG)	+	Authors: Singer, A.U., Kagan, O., Kim, Y., Edwards, A.M., Joachimiak, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

	Description: The structure of olei00960, a hydrolase from Oleispira antarctica		Description: The structure of olei00960, a hydrolase from Oleispira antarctica