3r0d - Revision history

OCA at 12:04, 14 March 2024

OCA — Thu, 14 Mar 2024 12:04:48 GMT

←Older revision		Revision as of 12:04, 14 March 2024
Line 3:		Line 3:
	<StructureSection load='3r0d' size='340' side='right'caption='[[3r0d]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='3r0d' size='340' side='right'caption='[[3r0d]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3r0d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Ecoli Ecoli~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R0D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R0D FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3r0d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R0D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R0D FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PXN:(2S)-1-[3-{[(2R)-2-HYDROXYPROPYL]OXY}-2,2-BIS({[(2R)-2-HYDROXYPROPYL]OXY}METHYL)PROPOXY]PROPAN-2-OL'>PXN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.501Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3o7u\|3o7u]]</div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PXN:(2S)-1-[3-{[(2R)-2-HYDROXYPROPYL]OXY}-2,2-BIS({[(2R)-2-HYDROXYPROPYL]OXY}METHYL)PROPOXY]PROPAN-2-OL'>PXN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">codA, b0337, JW0328 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Cytosine_deaminase Cytosine deaminase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.1 3.5.4.1] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r0d OCA], [https://pdbe.org/3r0d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r0d RCSB], [https://www.ebi.ac.uk/pdbsum/3r0d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r0d ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r0d OCA], [https://pdbe.org/3r0d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r0d RCSB], [https://www.ebi.ac.uk/pdbsum/3r0d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r0d ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/CODA_ECOLI CODA_ECOLI]

	==See Also==		==See Also==
Line 15:		Line 15:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Cytosine deaminase]]~~	+	[[Category: Escherichia coli K-12]]
-	~~[[Category: Ecoli~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Almo~~, S C~~]]	+	[[Category: Almo SC]]
-	[[Category: Fedorov~~, A A~~]]	+	[[Category: Fedorov AA]]
-	[[Category: Fedorov~~, E V~~]]	+	[[Category: Fedorov EV]]
-	[[Category: Hitchcock, D]]	+	[[Category: Hitchcock D]]
-	[[Category: Kamat, S]]	+	[[Category: Kamat S]]
-	[[Category: Raushel~~, F M]]~~	+	[[Category: Raushel FM]]
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Tim barrel~~]]	+

OCA at 05:43, 15 June 2022

OCA — Wed, 15 Jun 2022 05:43:37 GMT

←Older revision		Revision as of 05:43, 15 June 2022
Line 1:		Line 1:

	==Crystal structure of Cytosine Deaminase from Escherichia Coli complexed with two zinc atoms in the active site==		==Crystal structure of Cytosine Deaminase from Escherichia Coli complexed with two zinc atoms in the active site==
-	<StructureSection load='3r0d' size='340' side='right' caption='[[3r0d]], [[Resolution\|resolution]] 1.50Å' scene=''>	+	<StructureSection load='3r0d' size='340' side='right'caption='[[3r0d]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3r0d]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R0D OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3R0D FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3r0d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R0D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R0D FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PXN:(2S)-1-[3-{[(2R)-2-HYDROXYPROPYL]OXY}-2,2-BIS({[(2R)-2-HYDROXYPROPYL]OXY}METHYL)PROPOXY]PROPAN-2-OL'>PXN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PXN:(2S)-1-[3-{[(2R)-2-HYDROXYPROPYL]OXY}-2,2-BIS({[(2R)-2-HYDROXYPROPYL]OXY}METHYL)PROPOXY]PROPAN-2-OL'>PXN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3o7u\|3o7u]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3o7u\|3o7u]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">codA, b0337, JW0328 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">codA, b0337, JW0328 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Cytosine_deaminase Cytosine deaminase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.1 3.5.4.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Cytosine_deaminase Cytosine deaminase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.1 3.5.4.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3r0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r0d OCA], [~~http~~://pdbe.org/3r0d PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3r0d RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3r0d PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3r0d ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r0d OCA], [https://pdbe.org/3r0d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r0d RCSB], [https://www.ebi.ac.uk/pdbsum/3r0d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r0d ProSAT]</span></td></tr>
	</table>		</table>

	==See Also==		==See Also==
-	*[[Deaminase\|Deaminase]]	+	*[[Deaminase 3D structures\|Deaminase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Cytosine deaminase]]		[[Category: Cytosine deaminase]]
	[[Category: Ecoli]]		[[Category: Ecoli]]
		+	[[Category: Large Structures]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Fedorov, A A]]		[[Category: Fedorov, A A]]

OCA at 17:22, 4 August 2016

OCA — Thu, 04 Aug 2016 17:22:27 GMT

←Older revision		Revision as of 17:22, 4 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of Cytosine Deaminase from Escherichia Coli complexed with two zinc atoms in the active site==		==Crystal structure of Cytosine Deaminase from Escherichia Coli complexed with two zinc atoms in the active site==
	<StructureSection load='3r0d' size='340' side='right' caption='[[3r0d]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='3r0d' size='340' side='right' caption='[[3r0d]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3r0d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia coli~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R0D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3R0D FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3r0d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R0D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3R0D FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PXN:(2S)-1-[3-{[(2R)-2-HYDROXYPROPYL]OXY}-2,2-BIS({[(2R)-2-HYDROXYPROPYL]OXY}METHYL)PROPOXY]PROPAN-2-OL'>PXN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PXN:(2S)-1-[3-{[(2R)-2-HYDROXYPROPYL]OXY}-2,2-BIS({[(2R)-2-HYDROXYPROPYL]OXY}METHYL)PROPOXY]PROPAN-2-OL'>PXN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3o7u\|3o7u]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3o7u\|3o7u]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">codA, b0337, JW0328 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~562 Escherichia coli~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">codA, b0337, JW0328 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cytosine_deaminase Cytosine deaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.1 3.5.4.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cytosine_deaminase Cytosine deaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.1 3.5.4.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3r0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r0d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3r0d RCSB], [http://www.ebi.ac.uk/pdbsum/3r0d PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3r0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r0d OCA], [http://pdbe.org/3r0d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3r0d RCSB], [http://www.ebi.ac.uk/pdbsum/3r0d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3r0d ProSAT]</span></td></tr>
	</table>		</table>

Line 15:		Line 16:
	</StructureSection>		</StructureSection>
	[[Category: Cytosine deaminase]]		[[Category: Cytosine deaminase]]
-	[[Category: ~~Escherichia coli~~]]	+	[[Category: Ecoli]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Fedorov, A A]]		[[Category: Fedorov, A A]]

OCA at 21:38, 3 January 2015

OCA — Sat, 03 Jan 2015 21:38:07 GMT

←Older revision		Revision as of 21:38, 3 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3r0d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R0D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3R0D FirstGlance]. <br>		<table><tr><td colspan='2'>[[3r0d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R0D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3R0D FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PXN:(2S)-1-[3-{[(2R)-2-HYDROXYPROPYL]OXY}-2,2-BIS({[(2R)-2-HYDROXYPROPYL]OXY}METHYL)PROPOXY]PROPAN-2-OL'>PXN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PXN:(2S)-1-[3-{[(2R)-2-HYDROXYPROPYL]OXY}-2,2-BIS({[(2R)-2-HYDROXYPROPYL]OXY}METHYL)PROPOXY]PROPAN-2-OL'>PXN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3o7u\|3o7u]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3o7u\|3o7u]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">codA, b0337, JW0328 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">codA, b0337, JW0328 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cytosine_deaminase Cytosine deaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.1 3.5.4.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cytosine_deaminase Cytosine deaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.1 3.5.4.1] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3r0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r0d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3r0d RCSB], [http://www.ebi.ac.uk/pdbsum/3r0d PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3r0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r0d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3r0d RCSB], [http://www.ebi.ac.uk/pdbsum/3r0d PDBsum]</span></td></tr>
-	<table>	+	</table>

	==See Also==		==See Also==
Line 16:		Line 16:
	[[Category: Cytosine deaminase]]		[[Category: Cytosine deaminase]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Almo, S C.]]	+	[[Category: Almo, S C]]
-	[[Category: Fedorov, A A.]]	+	[[Category: Fedorov, A A]]
-	[[Category: Fedorov, E V.]]	+	[[Category: Fedorov, E V]]
-	[[Category: Hitchcock, D.]]	+	[[Category: Hitchcock, D]]
-	[[Category: Kamat, S.]]	+	[[Category: Kamat, S]]
-	[[Category: Raushel, F M.]]	+	[[Category: Raushel, F M]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Tim barrel]]		[[Category: Tim barrel]]

OCA at 04:54, 5 June 2014

OCA — Thu, 05 Jun 2014 04:54:48 GMT

←Older revision		Revision as of 04:54, 5 June 2014
Line 1:		Line 1:
-	[[~~Image:~~3r0d.~~jpg~~\|~~left~~\|~~200px~~]]	+	==Crystal structure of Cytosine Deaminase from Escherichia Coli complexed with two zinc atoms in the active site==
		+	<StructureSection load='3r0d' size='340' side='right' caption='[[3r0d]], [[Resolution\|resolution]] 1.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3r0d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R0D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3R0D FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PXN:(2S)-1-[3-{[(2R)-2-HYDROXYPROPYL]OXY}-2,2-BIS({[(2R)-2-HYDROXYPROPYL]OXY}METHYL)PROPOXY]PROPAN-2-OL'>PXN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3o7u\|3o7u]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">codA, b0337, JW0328 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cytosine_deaminase Cytosine deaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.1 3.5.4.1] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3r0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r0d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3r0d RCSB], [http://www.ebi.ac.uk/pdbsum/3r0d PDBsum]</span></td></tr>
		+	<table>

-	~~<!--~~	+	==See Also==
-	~~The line below this paragraph, containing "STRUCTURE_3r0d", creates the "Structure Box" on the page.~~	+	*[[Deaminase\|Deaminase]]
-	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~	+	__TOC__
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~	+	</StructureSection>
-	~~or leave the SCENE parameter empty for the default display.~~	+
-	~~-->~~	+
-	~~{{STRUCTURE_3r0d\| PDB~~=~~3r0d \| SCENE= }}~~	+
-		+
-	~~===Crystal structure of Cytosine Deaminase from Escherichia Coli complexed with two zinc atoms in the active site~~===	+
-		+
-		+
-	~~==About this Structure==~~	+
-	[[~~3r0d~~]] ~~is a 1 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R0D OCA].~~	+
	[[Category: Cytosine deaminase]]		[[Category: Cytosine deaminase]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]

OCA at 05:52, 8 March 2012

OCA — Thu, 08 Mar 2012 05:52:27 GMT

←Older revision		Revision as of 05:52, 8 March 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3r0d.jpg\|left\|200px]]

-	The ~~entry 3r0d~~ is ~~ON HOLD~~ ~~until Mar 07 2013~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3r0d", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3r0d\| PDB=3r0d \| SCENE= }}

-	~~Authors: Fedorov, A.A., Fedorov, E.V., Kamat, S., Hitchcock, D., Raushel, F.M., Almo, S.C.~~	+	===Crystal structure of Cytosine Deaminase from Escherichia Coli complexed with two zinc atoms in the active site===

-	~~Description: Crystal~~ structure ~~of Cytosine Deaminase~~ from Escherichia ~~Coli complexed with two zinc atoms in the active site~~	+
		+	==About this Structure==
		+	[[3r0d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R0D OCA].
		+	[[Category: Cytosine deaminase]]
		+	[[Category: Escherichia coli]]
		+	[[Category: Almo, S C.]]
		+	[[Category: Fedorov, A A.]]
		+	[[Category: Fedorov, E V.]]
		+	[[Category: Hitchcock, D.]]
		+	[[Category: Kamat, S.]]
		+	[[Category: Raushel, F M.]]
		+	[[Category: Hydrolase]]
		+	[[Category: Tim barrel]]

OCA at 05:53, 25 January 2012

OCA — Wed, 25 Jan 2012 05:53:31 GMT

←Older revision		Revision as of 05:53, 25 January 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3r0d is ON HOLD until ~~Paper Publication~~	+	The entry 3r0d is ON HOLD until Mar 07 2013

	Authors: Fedorov, A.A., Fedorov, E.V., Kamat, S., Hitchcock, D., Raushel, F.M., Almo, S.C.		Authors: Fedorov, A.A., Fedorov, E.V., Kamat, S., Hitchcock, D., Raushel, F.M., Almo, S.C.

	Description: Crystal structure of Cytosine Deaminase from Escherichia Coli complexed with two zinc atoms in the active site		Description: Crystal structure of Cytosine Deaminase from Escherichia Coli complexed with two zinc atoms in the active site

OCA at 08:38, 6 April 2011

OCA — Wed, 06 Apr 2011 08:38:07 GMT

←Older revision		Revision as of 08:38, 6 April 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3r0d is ON HOLD	+	The entry 3r0d is ON HOLD until Paper Publication

	Authors: Fedorov, A.A., Fedorov, E.V., Kamat, S., Hitchcock, D., Raushel, F.M., Almo, S.C.		Authors: Fedorov, A.A., Fedorov, E.V., Kamat, S., Hitchcock, D., Raushel, F.M., Almo, S.C.

	Description: Crystal structure of Cytosine Deaminase from Escherichia Coli complexed with two zinc atoms in the active site		Description: Crystal structure of Cytosine Deaminase from Escherichia Coli complexed with two zinc atoms in the active site

OCA: Protected "3r0d" [edit=sysop:move=sysop]

OCA — Wed, 16 Mar 2011 08:07:01 GMT

Protected "3r0d" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:07, 16 March 2011

OCA: New page: '''Unreleased structure''' The entry 3r0d is ON HOLD Authors: Fedorov, A.A., Fedorov, E.V., Kamat, S., Hitchcock, D., Raushel, F.M., Almo, S.C. Description: Crystal structure of Cytosi...

OCA — Wed, 16 Mar 2011 08:06:59 GMT

New page: '''Unreleased structure''' The entry 3r0d is ON HOLD Authors: Fedorov, A.A., Fedorov, E.V., Kamat, S., Hitchcock, D., Raushel, F.M., Almo, S.C. Description: Crystal structure of Cytosi...

New page

'''Unreleased structure'''

The entry 3r0d is ON HOLD

Authors: Fedorov, A.A., Fedorov, E.V., Kamat, S., Hitchcock, D., Raushel, F.M., Almo, S.C.

Description: Crystal structure of Cytosine Deaminase from Escherichia Coli complexed with two zinc atoms in the active site