3rpk - Revision history

OCA at 17:19, 1 November 2023

OCA — Wed, 01 Nov 2023 17:19:02 GMT

←Older revision		Revision as of 17:19, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='3rpk' size='340' side='right'caption='[[3rpk]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='3rpk' size='340' side='right'caption='[[3rpk]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3rpk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"diplococcus_pneumoniae"_(klein_1884)_weichselbaum_1886 "diplococcus~~ pneumoniae~~" (klein 1884) weichselbaum 1886~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RPK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RPK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3rpk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RPK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RPK FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.8Å</td></tr>
-	~~<tr~~ id~~='related'><td class~~="~~sblockLbl~~">~~<b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max~~-~~height: 3em;'>[[2l4o\|2l4o]]~~, [[~~2x9w~~\|~~2x9w~~]]~~, [[2x9x\|2x9x]], [[2x9y\|2x9y]], [[2x9z\|2x9z]]</div>~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>rrgB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~1313~~ "~~Diplococcus pneumoniae~~" ~~(Klein 1884) Weichselbaum 1886])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rpk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rpk OCA], [https://pdbe.org/3rpk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rpk RCSB], [https://www.ebi.ac.uk/pdbsum/3rpk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rpk ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rpk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rpk OCA], [https://pdbe.org/3rpk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rpk RCSB], [https://www.ebi.ac.uk/pdbsum/3rpk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rpk ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A0H2UNM7_STRPN A0A0H2UNM7_STRPN]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 18:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 3rpk" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3rpk" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Pilin 3D structures\|Pilin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 23:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Baker, E N~~]]	+	[[Category: Streptococcus pneumoniae]]
-	[[Category: ~~Paterson, N G~~]]	+	[[Category: Baker EN]]
-	[[Category: ~~Cell adhesion]]~~	+	[[Category: Paterson NG]]
-	~~[[Category: Cell wall]]~~	+
-	~~[[Category: Ig-like fold]]~~	+
-	~~[[Category: Isopeptide bond]]~~	+
-	~~[[Category: Peptidoglycan-anchor]]~~	+
-	~~[[Category: Structural protein~~]]	+

OCA at 10:20, 22 June 2022

OCA — Wed, 22 Jun 2022 10:20:45 GMT

←Older revision		Revision as of 10:20, 22 June 2022
Line 1:		Line 1:

	==Structure of the Full-Length Major Pilin RrgB from Streptococcus pneumoniae==		==Structure of the Full-Length Major Pilin RrgB from Streptococcus pneumoniae==
-	<StructureSection load='3rpk' size='340' side='right' caption='[[3rpk]], [[Resolution\|resolution]] 2.80Å' scene=''>	+	<StructureSection load='3rpk' size='340' side='right'caption='[[3rpk]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3rpk]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"diplococcus_pneumoniae"_(klein_1884)_weichselbaum_1886 "diplococcus pneumoniae" (klein 1884) weichselbaum 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RPK OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3RPK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3rpk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"diplococcus_pneumoniae"_(klein_1884)_weichselbaum_1886 "diplococcus pneumoniae" (klein 1884) weichselbaum 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RPK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RPK FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2l4o\|2l4o]], [[2x9w\|2x9w]], [[2x9x\|2x9x]], [[2x9y\|2x9y]], [[2x9z\|2x9z]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2l4o\|2l4o]], [[2x9w\|2x9w]], [[2x9x\|2x9x]], [[2x9y\|2x9y]], [[2x9z\|2x9z]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrgB ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 "Diplococcus pneumoniae" (Klein 1884) Weichselbaum 1886])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrgB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 "Diplococcus pneumoniae" (Klein 1884) Weichselbaum 1886])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3rpk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rpk OCA], [~~http~~://pdbe.org/3rpk PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3rpk RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3rpk PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3rpk ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rpk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rpk OCA], [https://pdbe.org/3rpk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rpk RCSB], [https://www.ebi.ac.uk/pdbsum/3rpk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rpk ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Baker, E N]]		[[Category: Baker, E N]]
	[[Category: Paterson, N G]]		[[Category: Paterson, N G]]

OCA at 13:24, 11 August 2016

OCA — Thu, 11 Aug 2016 13:24:41 GMT

←Older revision		Revision as of 13:24, 11 August 2016
Line 1:		Line 1:
		+
	==Structure of the Full-Length Major Pilin RrgB from Streptococcus pneumoniae==		==Structure of the Full-Length Major Pilin RrgB from Streptococcus pneumoniae==
	<StructureSection load='3rpk' size='340' side='right' caption='[[3rpk]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='3rpk' size='340' side='right' caption='[[3rpk]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3rpk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Streptococcus_pneumoniae Streptococcus~~ pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RPK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RPK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3rpk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"diplococcus_pneumoniae"_(klein_1884)_weichselbaum_1886 "diplococcus pneumoniae" (klein 1884) weichselbaum 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RPK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RPK FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2l4o\|2l4o]], [[2x9w\|2x9w]], [[2x9x\|2x9x]], [[2x9y\|2x9y]], [[2x9z\|2x9z]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2l4o\|2l4o]], [[2x9w\|2x9w]], [[2x9x\|2x9x]], [[2x9y\|2x9y]], [[2x9z\|2x9z]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrgB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 ~~Streptococcus~~ pneumoniae])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrgB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 "Diplococcus pneumoniae" (Klein 1884) Weichselbaum 1886])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rpk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rpk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rpk RCSB], [http://www.ebi.ac.uk/pdbsum/3rpk PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rpk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rpk OCA], [http://pdbe.org/3rpk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3rpk RCSB], [http://www.ebi.ac.uk/pdbsum/3rpk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3rpk ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3rpk" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Streptococcus pneumoniae]]
	[[Category: Baker, E N]]		[[Category: Baker, E N]]
	[[Category: Paterson, N G]]		[[Category: Paterson, N G]]

OCA at 10:23, 4 January 2015

OCA — Sun, 04 Jan 2015 10:23:02 GMT

←Older revision		Revision as of 10:23, 4 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3rpk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RPK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RPK FirstGlance]. <br>		<table><tr><td colspan='2'>[[3rpk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RPK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RPK FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2l4o\|2l4o]], [[2x9w\|2x9w]], [[2x9x\|2x9x]], [[2x9y\|2x9y]], [[2x9z\|2x9z]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2l4o\|2l4o]], [[2x9w\|2x9w]], [[2x9x\|2x9x]], [[2x9y\|2x9y]], [[2x9z\|2x9z]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrgB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 Streptococcus pneumoniae])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrgB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 Streptococcus pneumoniae])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rpk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rpk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rpk RCSB], [http://www.ebi.ac.uk/pdbsum/3rpk PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rpk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rpk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rpk RCSB], [http://www.ebi.ac.uk/pdbsum/3rpk PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 14:		Line 14:
	Structure of the Full-Length Major Pilin from Streptococcus pneumoniae: Implications for Isopeptide Bond Formation in Gram-Positive Bacterial Pili.,Paterson NG, Baker EN PLoS One. 2011;6(7):e22095. Epub 2011 Jul 8. PMID:21760959<ref>PMID:21760959</ref>		Structure of the Full-Length Major Pilin from Streptococcus pneumoniae: Implications for Isopeptide Bond Formation in Gram-Positive Bacterial Pili.,Paterson NG, Baker EN PLoS One. 2011;6(7):e22095. Epub 2011 Jul 8. PMID:21760959<ref>PMID:21760959</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Streptococcus pneumoniae]]		[[Category: Streptococcus pneumoniae]]
-	[[Category: Baker, E N.]]	+	[[Category: Baker, E N]]
-	[[Category: Paterson, N G.]]	+	[[Category: Paterson, N G]]
	[[Category: Cell adhesion]]		[[Category: Cell adhesion]]
	[[Category: Cell wall]]		[[Category: Cell wall]]

OCA at 04:45, 5 June 2014

OCA — Thu, 05 Jun 2014 04:45:45 GMT

←Older revision		Revision as of 04:45, 5 June 2014
Line 1:		Line 1:
-	[[~~Image:~~3rpk.~~png~~\|~~left~~\|~~200px~~]]	+	==Structure of the Full-Length Major Pilin RrgB from Streptococcus pneumoniae==
		+	<StructureSection load='3rpk' size='340' side='right' caption='[[3rpk]], [[Resolution\|resolution]] 2.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3rpk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RPK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RPK FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2l4o\|2l4o]], [[2x9w\|2x9w]], [[2x9x\|2x9x]], [[2x9y\|2x9y]], [[2x9z\|2x9z]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrgB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 Streptococcus pneumoniae])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rpk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rpk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rpk RCSB], [http://www.ebi.ac.uk/pdbsum/3rpk PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The surface of the pneumococcal cell is adorned with virulence factors including pili. The major pilin RrgB, which forms the pilus shaft on pathogenic Streptococcus pneumoniae, comprises four immunoglobulin (Ig)-like domains, each with a common CnaB topology. The three C-terminal domains are each stabilized by internal Lys-Asn isopeptide bonds, formed autocatalytically with the aid of an essential Glu residue. The structure and orientation of the crucial N-terminal domain, which provides the covalent linkage to the next pilin subunit in the shaft, however, remain incompletely characterised. We report the crystal structure of full length RrgB, solved by X-ray crystallography at 2.8 A resolution. The N-terminal (D1) domain makes few contacts with the rest of the RrgB structure, and has higher B-factors. This may explain why D1 is readily lost by proteolysis, as are the N-terminal domains of many major pilins. D1 is also found to have a triad of Lys, Asn and Glu residues in the same topological positions as in the other domains, yet mass spectrometry and the crystal structure show that no internal isopeptide bond is formed. We show that this is because beta-strand G of D1, which carries the Asn residue, diverges from beta-strand A, carrying the Lys residue, such that these residues are too far apart for bond formation. Strand G also carries the YPKN motif that provides the essential Lys residue for the sortase-mediated intermolecular linkages along the pilus shaft. Interaction with the sortase and formation of the intermolecular linkage could result in a change in the orientation of this strand, explaining why isopeptide bond formation in the N-terminal domains of some major pilins appears to take place only upon assembly of the pili.

-	<!--	+	Structure of the Full-Length Major Pilin from Streptococcus pneumoniae: Implications for Isopeptide Bond Formation in Gram-Positive Bacterial Pili.,Paterson NG, Baker EN PLoS One. 2011;6(7):e22095. Epub 2011 Jul 8. PMID:21760959<ref>PMID:21760959</ref>
-	~~The line below this paragraph~~, ~~containing "STRUCTURE_3rpk"~~, ~~creates the "Structure Box" on the page~~.	+
-	~~You may change the PDB parameter~~ (~~which sets the PDB file loaded into the applet~~)	+
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~	+
-	~~or leave the SCENE parameter empty for the default display~~.	+
-	-->	+
-	~~{{STRUCTURE_3rpk\| PDB=3rpk \| SCENE= }}~~	+

-	~~===Structure~~ of the ~~Full-Length Major Pilin RrgB from Streptococcus pneumoniae===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-		+	== References ==
-	~~<!--~~	+	<references/>
-	~~The line below this paragraph, {{ABSTRACT_PUBMED_21760959}}, adds the Publication Abstract to the page~~	+	__TOC__
-	~~(as it appears on PubMed at http://www~~.~~pubmed~~.~~gov), where 21760959 is the PubMed ID number~~.	+	</StructureSection>
-	-->	+
-	~~{{ABSTRACT_PUBMED_21760959}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3rpk]] is a 2 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RPK OCA].~~	+
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:021760959<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Streptococcus pneumoniae]]		[[Category: Streptococcus pneumoniae]]
	[[Category: Baker, E N.]]		[[Category: Baker, E N.]]

OCA at 04:56, 27 July 2011

OCA — Wed, 27 Jul 2011 04:56:57 GMT

←Older revision		Revision as of 04:56, 27 July 2011
Line 1:		Line 1:
-	[[Image:3rpk.~~jpg~~\|left\|200px]]	+	[[Image:3rpk.png\|left\|200px]]

	<!--		<!--
Line 11:		Line 11:
	===Structure of the Full-Length Major Pilin RrgB from Streptococcus pneumoniae===		===Structure of the Full-Length Major Pilin RrgB from Streptococcus pneumoniae===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_21760959}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 21760959 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_21760959}}

	==About this Structure==		==About this Structure==
	[[3rpk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RPK OCA].		[[3rpk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RPK OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:021760959</ref><references group="xtra"/>
	[[Category: Streptococcus pneumoniae]]		[[Category: Streptococcus pneumoniae]]
	[[Category: Baker, E N.]]		[[Category: Baker, E N.]]

OCA at 06:38, 15 June 2011

OCA — Wed, 15 Jun 2011 06:38:02 GMT

←Older revision		Revision as of 06:38, 15 June 2011
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3rpk.jpg\|left\|200px]]

-	The ~~entry 3rpk~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3rpk", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3rpk\| PDB=3rpk \| SCENE= }}

-	~~Authors: Paterson, N.G., Baker, E.N.~~	+	===Structure of the Full-Length Major Pilin RrgB from Streptococcus pneumoniae===

-	~~Description:~~ Structure ~~of the~~ Full~~-Length Major Pilin RrgB~~ from Streptococcus pneumoniae	+
		+	==About this Structure==
		+	[[3rpk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RPK OCA].
		+	[[Category: Streptococcus pneumoniae]]
		+	[[Category: Baker, E N.]]
		+	[[Category: Paterson, N G.]]
		+	[[Category: Cell adhesion]]
		+	[[Category: Cell wall]]
		+	[[Category: Ig-like fold]]
		+	[[Category: Isopeptide bond]]
		+	[[Category: Peptidoglycan-anchor]]
		+	[[Category: Structural protein]]

OCA at 05:14, 18 May 2011

OCA — Wed, 18 May 2011 05:14:31 GMT

←Older revision		Revision as of 05:14, 18 May 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3rpk is ON HOLD	+	The entry 3rpk is ON HOLD until Paper Publication

	Authors: Paterson, N.G., Baker, E.N.		Authors: Paterson, N.G., Baker, E.N.

	Description: Structure of the Full-Length Major Pilin RrgB from Streptococcus pneumoniae		Description: Structure of the Full-Length Major Pilin RrgB from Streptococcus pneumoniae

OCA: Protected "3rpk" [edit=sysop:move=sysop]

OCA — Wed, 04 May 2011 06:35:33 GMT

Protected "3rpk" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:35, 4 May 2011

OCA: New page: '''Unreleased structure''' The entry 3rpk is ON HOLD Authors: Paterson, N.G., Baker, E.N. Description: Structure of the Full-Length Major Pilin RrgB from Streptococcus pneumoniae

OCA — Wed, 04 May 2011 06:35:32 GMT

New page: '''Unreleased structure''' The entry 3rpk is ON HOLD Authors: Paterson, N.G., Baker, E.N. Description: Structure of the Full-Length Major Pilin RrgB from Streptococcus pneumoniae

New page

'''Unreleased structure'''

The entry 3rpk is ON HOLD

Authors: Paterson, N.G., Baker, E.N.

Description: Structure of the Full-Length Major Pilin RrgB from Streptococcus pneumoniae