3sg0 - Revision history

OCA at 07:54, 29 June 2022

OCA — Wed, 29 Jun 2022 07:54:47 GMT

←Older revision		Revision as of 07:54, 29 June 2022
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		+
	==The crystal structure of an extracellular ligand-binding receptor from Rhodopseudomonas palustris HaA2==		==The crystal structure of an extracellular ligand-binding receptor from Rhodopseudomonas palustris HaA2==
-	<StructureSection load='3sg0' size='340' side='right' caption='[[3sg0]], [[Resolution\|resolution]] 1.20Å' scene=''>	+	<StructureSection load='3sg0' size='340' side='right'caption='[[3sg0]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3sg0]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Rhop2 Rhop2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SG0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3SG0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3sg0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhop2 Rhop2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SG0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SG0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=173:BENZOYL-FORMIC+ACID'>173</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=173:BENZOYL-FORMIC+ACID'>173</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rhodopseudomonas palustris, RPB_4630 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=316058 RHOP2])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rhodopseudomonas palustris, RPB_4630 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=316058 RHOP2])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3sg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3sg0 OCA], [~~http~~://pdbe.org/3sg0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3sg0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3sg0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3sg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3sg0 OCA], [https://pdbe.org/3sg0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3sg0 RCSB], [https://www.ebi.ac.uk/pdbsum/3sg0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3sg0 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Rhop2]]		[[Category: Rhop2]]
	[[Category: Collart, F]]		[[Category: Collart, F]]

OCA at 21:19, 15 October 2015

OCA — Thu, 15 Oct 2015 21:19:35 GMT

←Older revision		Revision as of 21:19, 15 October 2015
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	<StructureSection load='3sg0' size='340' side='right' caption='[[3sg0]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='3sg0' size='340' side='right' caption='[[3sg0]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3sg0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Rhodopseudomonas_palustris Rhodopseudomonas palustris~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SG0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SG0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3sg0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhop2 Rhop2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SG0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SG0 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=173:BENZOYL-FORMIC+ACID'>173</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=173:BENZOYL-FORMIC+ACID'>173</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rhodopseudomonas palustris, RPB_4630 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~1076 Rhodopseudomonas palustris~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rhodopseudomonas palustris, RPB_4630 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=316058 RHOP2])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3sg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3sg0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3sg0 RCSB], [http://www.ebi.ac.uk/pdbsum/3sg0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3sg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3sg0 OCA], [http://pdbe.org/3sg0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3sg0 RCSB], [http://www.ebi.ac.uk/pdbsum/3sg0 PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Lignin comprises 15-25% of plant biomass and represents a major environmental carbon source for utilization by soil microorganisms. Access to this energy resource requires the action of fungal and bacterial enzymes to break down the lignin polymer into a complex assortment of aromatic compounds that can be transported into the cells. To improve our understanding of the utilization of lignin by microorganisms, we characterized the molecular properties of solute binding proteins of ATP-binding cassette transporter proteins that interact with these compounds. A combination of functional screens and structural studies characterized the binding specificity of the solute binding proteins for aromatic compounds derived from lignin such as p-coumarate, 3-phenylpropionic acid and compounds with more complex ring substitutions. A ligand screen based on thermal stabilization identified several binding protein clusters that exhibit preferences based on the size or number of aromatic ring substituents. Multiple X-ray crystal structures of protein-ligand complexes for these clusters identified the molecular basis of the binding specificity for the lignin-derived aromatic compounds. The screens and structural data provide new functional assignments for these solute-binding proteins which can be used to infer their transport specificity. This knowledge of the functional roles and molecular binding specificity of these proteins will support the identification of the specific enzymes and regulatory proteins of peripheral pathways that funnel these compounds to central metabolic pathways and will improve the predictive power of sequence-based functional annotation methods for this family of proteins. (c) Proteins 2013;. (c) 2013 Wiley Periodicals, Inc.
		+
		+	Structural and functional characterization of solute binding proteins for aromatic compounds derived from lignin: p-coumaric acid and related aromatic acids.,Tan K, Chang C, Cuff M, Osipiuk J, Landorf E, Mack JC, Zerbs S, Joachimiak A, Collart FR Proteins. 2013 Apr 22. doi: 10.1002/prot.24305. PMID:23606130<ref>PMID:23606130</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 3sg0" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Rhodopseudomonas palustris~~]]	+	[[Category: Rhop2]]
	[[Category: Collart, F]]		[[Category: Collart, F]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]

OCA at 06:30, 21 December 2014

OCA — Sun, 21 Dec 2014 06:30:29 GMT

←Older revision		Revision as of 06:30, 21 December 2014
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-	~~{{STRUCTURE_3sg0\| PDB=3sg0 \| SCENE= }}~~	+	==The crystal structure of an extracellular ligand-binding receptor from Rhodopseudomonas palustris HaA2==
-	===The crystal structure of an extracellular ligand-binding receptor from Rhodopseudomonas palustris HaA2===	+	<StructureSection load='3sg0' size='340' side='right' caption='[[3sg0]], [[Resolution\|resolution]] 1.20Å' scene=''>
-		+	== Structural highlights ==
-	==~~About this Structure~~==	+	<table><tr><td colspan='2'>[[3sg0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SG0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SG0 FirstGlance]. <br>
-	[[3sg0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SG0 OCA].	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=173:BENZOYL-FORMIC+ACID'>173</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rhodopseudomonas palustris, RPB_4630 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1076 Rhodopseudomonas palustris])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3sg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3sg0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3sg0 RCSB], [http://www.ebi.ac.uk/pdbsum/3sg0 PDBsum]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
	[[Category: Rhodopseudomonas palustris]]		[[Category: Rhodopseudomonas palustris]]
-	[[Category: Collart, F.]]	+	[[Category: Collart, F]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Mack, J C.]]	+	[[Category: Mack, J C]]
-	[[Category: Tan, K.]]	+	[[Category: Tan, K]]
-	[[Category: Zerbs, S.]]	+	[[Category: Zerbs, S]]
	[[Category: Ligand-binding]]		[[Category: Ligand-binding]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
-	[[Category: ~~Midwest center for structural genomic]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
	[[Category: Psi-biology]]		[[Category: Psi-biology]]
	[[Category: Signaling protein]]		[[Category: Signaling protein]]
-	[[Category: Structural genomic]]

OCA at 07:43, 16 May 2013

OCA — Thu, 16 May 2013 07:43:09 GMT

←Older revision		Revision as of 07:43, 16 May 2013
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-	[[Image:3sg0.jpg\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3sg0", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3sg0\| PDB=3sg0 \| SCENE= }}		{{STRUCTURE_3sg0\| PDB=3sg0 \| SCENE= }}
-
	===The crystal structure of an extracellular ligand-binding receptor from Rhodopseudomonas palustris HaA2===		===The crystal structure of an extracellular ligand-binding receptor from Rhodopseudomonas palustris HaA2===
-

	==About this Structure==		==About this Structure==

OCA at 06:26, 29 June 2011

OCA — Wed, 29 Jun 2011 06:26:23 GMT

←Older revision		Revision as of 06:26, 29 June 2011
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-	~~'''Unreleased structure'''~~	+	[[Image:3sg0.jpg\|left\|200px]]

-	The ~~entry 3sg0~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3sg0", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3sg0\| PDB=3sg0 \| SCENE= }}

-	~~Authors: Tan, K., Mack, J.C., Zerbs, S., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)~~	+	===The crystal structure of an extracellular ligand-binding receptor from Rhodopseudomonas palustris HaA2===

-	~~Description: The crystal~~ structure ~~of an extracellular ligand-binding receptor~~ from Rhodopseudomonas palustris ~~HaA2~~	+
		+	==About this Structure==
		+	[[3sg0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SG0 OCA].
		+	[[Category: Rhodopseudomonas palustris]]
		+	[[Category: Collart, F.]]
		+	[[Category: Joachimiak, A.]]
		+	[[Category: MCSG, Midwest Center for Structural Genomics.]]
		+	[[Category: Mack, J C.]]
		+	[[Category: Tan, K.]]
		+	[[Category: Zerbs, S.]]
		+	[[Category: Ligand-binding]]
		+	[[Category: Mcsg]]
		+	[[Category: Midwest center for structural genomic]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-biology]]
		+	[[Category: Signaling protein]]
		+	[[Category: Structural genomic]]

OCA: Protected "3sg0" [edit=sysop:move=sysop]

OCA — Wed, 22 Jun 2011 16:23:23 GMT

Protected "3sg0" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:23, 22 June 2011

OCA: New page: '''Unreleased structure''' The entry 3sg0 is ON HOLD Authors: Tan, K., Mack, J.C., Zerbs, S., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG) Description: Th...

OCA — Wed, 22 Jun 2011 16:23:22 GMT

New page: '''Unreleased structure''' The entry 3sg0 is ON HOLD Authors: Tan, K., Mack, J.C., Zerbs, S., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG) Description: Th...

New page

'''Unreleased structure'''

The entry 3sg0 is ON HOLD

Authors: Tan, K., Mack, J.C., Zerbs, S., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Description: The crystal structure of an extracellular ligand-binding receptor from Rhodopseudomonas palustris HaA2