3ss2 - Revision history

OCA at 13:06, 14 March 2024

OCA — Thu, 14 Mar 2024 13:06:11 GMT

←Older revision		Revision as of 13:06, 14 March 2024
Line 3:		Line 3:
	<StructureSection load='3ss2' size='340' side='right'caption='[[3ss2]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='3ss2' size='340' side='right'caption='[[3ss2]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ss2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Pyrfu Pyrfu~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SS2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SS2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ss2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SS2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SS2 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>~~, ~~<scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Neutron Diffraction, [[Resolution\|Resolution]] 1.75Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[3kyx\|3kyx]], [[3ryg\|3ryg]], [[3rz6\|3rz6]], [[3rzr\|3rzr]], [[3rzt\|3rzt]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">PF1282, rub ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=186497 PYRFU])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ss2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ss2 OCA], [https://pdbe.org/3ss2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ss2 RCSB], [https://www.ebi.ac.uk/pdbsum/3ss2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ss2 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ss2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ss2 OCA], [https://pdbe.org/3ss2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ss2 RCSB], [https://www.ebi.ac.uk/pdbsum/3ss2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ss2 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/RUBR_PYRFU RUBR_PYRFU]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.	+	[https://www.uniprot.org/uniprot/RUBR_PYRFU RUBR_PYRFU] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	Neutron crystallography is a powerful technique for experimental visualization of the positions of light atoms, including hydrogen and its isotope deuterium. In recent years, structural biologists have shown increasing interest in the technique as it uniquely complements X-ray crystallographic data by revealing the positions of D atoms in macromolecules. With this regained interest, access to macromolecular neutron crystallography beamlines is becoming a limiting step. In this report, it is shown that a rapid data-collection strategy can be a valuable alternative to longer data-collection times in appropriate cases. Comparison of perdeuterated rubredoxin structures refined against neutron data sets collected over hours and up to 5 d shows that rapid neutron data collection in just 14 h is sufficient to provide the positions of 269 D atoms without ambiguity.	+

-	Rapid visualization of hydrogen positions in protein neutron crystallographic structures.,Munshi P, Chung SL, Blakeley MP, Weiss KL, Myles DA, Meilleur F Acta Crystallogr D Biol Crystallogr. 2012 Jan;68(Pt 1):35-41. Epub 2011, Dec 9. PMID:22194331<ref>PMID:22194331</ref>	+	==See Also==
-		+	*[[Rubredoxin 3D structures\|Rubredoxin 3D structures]]
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+	*[[Rubredoxin PDB structures\|Rubredoxin PDB structures]]
-	~~</div>~~	+
-	~~<div class~~=~~"pdbe-citations 3ss2" style~~=~~"background-color:#fffaf0;"></div>~~	+
-	~~== References~~ ==	+
-	~~<references/>~~	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Pyrfu~~]]	+	[[Category: Pyrococcus furiosus DSM 3638]]
-	[[Category: Blakeley~~, M P~~]]	+	[[Category: Blakeley MP]]
-	[[Category: Chung, C L]]	+	[[Category: Chung C-L]]
-	[[Category: Meilleur, F]]	+	[[Category: Meilleur F]]
-	[[Category: Munshi, P]]	+	[[Category: Munshi P]]
-	[[Category: Myles~~, D A.A~~]]	+	[[Category: Myles DAA]]
-	[[Category: Weiss~~, K L]]~~	+	[[Category: Weiss KL]]
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Transport~~]]	+

OCA at 08:08, 29 June 2022

OCA — Wed, 29 Jun 2022 08:08:11 GMT

←Older revision		Revision as of 08:08, 29 June 2022
Line 1:		Line 1:

	==Neutron structure of perdeuterated rubredoxin using 48 hours 3rd pass data==		==Neutron structure of perdeuterated rubredoxin using 48 hours 3rd pass data==
-	<StructureSection load='3ss2' size='340' side='right' caption='[[3ss2]], [[Resolution\|resolution]] 1.75Å' scene=''>	+	<StructureSection load='3ss2' size='340' side='right'caption='[[3ss2]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ss2]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Pyrfu Pyrfu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SS2 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3SS2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ss2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrfu Pyrfu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SS2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SS2 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3kyx\|3kyx]], [[3ryg\|3ryg]], [[3rz6\|3rz6]], [[3rzr\|3rzr]], [[3rzt\|3rzt]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3kyx\|3kyx]], [[3ryg\|3ryg]], [[3rz6\|3rz6]], [[3rzr\|3rzr]], [[3rzt\|3rzt]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PF1282, rub ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=186497 PYRFU])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PF1282, rub ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=186497 PYRFU])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ss2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ss2 OCA], [~~http~~://pdbe.org/3ss2 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3ss2 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3ss2 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3ss2 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ss2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ss2 OCA], [https://pdbe.org/3ss2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ss2 RCSB], [https://www.ebi.ac.uk/pdbsum/3ss2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ss2 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/RUBR_PYRFU RUBR_PYRFU]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.	+	[[https://www.uniprot.org/uniprot/RUBR_PYRFU RUBR_PYRFU]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Pyrfu]]		[[Category: Pyrfu]]
	[[Category: Blakeley, M P]]		[[Category: Blakeley, M P]]

OCA at 18:55, 4 August 2016

OCA — Thu, 04 Aug 2016 18:55:39 GMT

←Older revision		Revision as of 18:55, 4 August 2016
Line 1:		Line 1:
		+
	==Neutron structure of perdeuterated rubredoxin using 48 hours 3rd pass data==		==Neutron structure of perdeuterated rubredoxin using 48 hours 3rd pass data==
	<StructureSection load='3ss2' size='340' side='right' caption='[[3ss2]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='3ss2' size='340' side='right' caption='[[3ss2]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ss2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SS2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SS2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ss2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrfu Pyrfu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SS2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SS2 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3kyx\|3kyx]], [[3ryg\|3ryg]], [[3rz6\|3rz6]], [[3rzr\|3rzr]], [[3rzt\|3rzt]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3kyx\|3kyx]], [[3ryg\|3ryg]], [[3rz6\|3rz6]], [[3rzr\|3rzr]], [[3rzt\|3rzt]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PF1282, rub ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=186497 ~~Pyrococcus furiosus DSM 3638~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PF1282, rub ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=186497 PYRFU])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ss2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ss2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ss2 RCSB], [http://www.ebi.ac.uk/pdbsum/3ss2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ss2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ss2 OCA], [http://pdbe.org/3ss2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ss2 RCSB], [http://www.ebi.ac.uk/pdbsum/3ss2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ss2 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 19:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3ss2" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pyrococcus furiosus dsm 3638~~]]	+	[[Category: Pyrfu]]
	[[Category: Blakeley, M P]]		[[Category: Blakeley, M P]]
	[[Category: Chung, C L]]		[[Category: Chung, C L]]

OCA at 18:26, 24 December 2014

OCA — Wed, 24 Dec 2014 18:26:59 GMT

←Older revision		Revision as of 18:26, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3ss2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SS2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SS2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3ss2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SS2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SS2 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3kyx\|3kyx]], [[3ryg\|3ryg]], [[3rz6\|3rz6]], [[3rzr\|3rzr]], [[3rzt\|3rzt]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3kyx\|3kyx]], [[3ryg\|3ryg]], [[3rz6\|3rz6]], [[3rzr\|3rzr]], [[3rzt\|3rzt]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PF1282, rub ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=186497 Pyrococcus furiosus DSM 3638])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PF1282, rub ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=186497 Pyrococcus furiosus DSM 3638])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ss2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ss2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ss2 RCSB], [http://www.ebi.ac.uk/pdbsum/3ss2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ss2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ss2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ss2 RCSB], [http://www.ebi.ac.uk/pdbsum/3ss2 PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RUBR_PYRFU RUBR_PYRFU]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 14:		Line 16:
	Rapid visualization of hydrogen positions in protein neutron crystallographic structures.,Munshi P, Chung SL, Blakeley MP, Weiss KL, Myles DA, Meilleur F Acta Crystallogr D Biol Crystallogr. 2012 Jan;68(Pt 1):35-41. Epub 2011, Dec 9. PMID:22194331<ref>PMID:22194331</ref>		Rapid visualization of hydrogen positions in protein neutron crystallographic structures.,Munshi P, Chung SL, Blakeley MP, Weiss KL, Myles DA, Meilleur F Acta Crystallogr D Biol Crystallogr. 2012 Jan;68(Pt 1):35-41. Epub 2011, Dec 9. PMID:22194331<ref>PMID:22194331</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 21:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Pyrococcus furiosus dsm 3638]]		[[Category: Pyrococcus furiosus dsm 3638]]
-	[[Category: Blakeley, M P.]]	+	[[Category: Blakeley, M P]]
-	[[Category: Chung, C L.]]	+	[[Category: Chung, C L]]
-	[[Category: Meilleur, F.]]	+	[[Category: Meilleur, F]]
-	[[Category: Munshi, P.]]	+	[[Category: Munshi, P]]
-	[[Category: Myles, D A.A.]]	+	[[Category: Myles, D A.A]]
-	[[Category: Weiss, K L.]]	+	[[Category: Weiss, K L]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Iron]]		[[Category: Iron]]
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
	[[Category: Transport]]		[[Category: Transport]]

OCA at 05:29, 5 June 2014

OCA — Thu, 05 Jun 2014 05:29:16 GMT

←Older revision		Revision as of 05:29, 5 June 2014
Line 1:		Line 1:
-	[[~~Image:~~3ss2.~~jpg~~\|~~left~~\|~~200px~~]]	+	==Neutron structure of perdeuterated rubredoxin using 48 hours 3rd pass data==
		+	<StructureSection load='3ss2' size='340' side='right' caption='[[3ss2]], [[Resolution\|resolution]] 1.75Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3ss2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SS2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SS2 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3kyx\|3kyx]], [[3ryg\|3ryg]], [[3rz6\|3rz6]], [[3rzr\|3rzr]], [[3rzt\|3rzt]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PF1282, rub ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=186497 Pyrococcus furiosus DSM 3638])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ss2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ss2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ss2 RCSB], [http://www.ebi.ac.uk/pdbsum/3ss2 PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Neutron crystallography is a powerful technique for experimental visualization of the positions of light atoms, including hydrogen and its isotope deuterium. In recent years, structural biologists have shown increasing interest in the technique as it uniquely complements X-ray crystallographic data by revealing the positions of D atoms in macromolecules. With this regained interest, access to macromolecular neutron crystallography beamlines is becoming a limiting step. In this report, it is shown that a rapid data-collection strategy can be a valuable alternative to longer data-collection times in appropriate cases. Comparison of perdeuterated rubredoxin structures refined against neutron data sets collected over hours and up to 5 d shows that rapid neutron data collection in just 14 h is sufficient to provide the positions of 269 D atoms without ambiguity.

-	~~<!--~~	+	Rapid visualization of hydrogen positions in protein neutron crystallographic structures.,Munshi P, Chung SL, Blakeley MP, Weiss KL, Myles DA, Meilleur F Acta Crystallogr D Biol Crystallogr. 2012 Jan;68(Pt 1):35-41. Epub 2011, Dec 9. PMID:22194331<ref>PMID:22194331</ref>
-	~~The line below this paragraph~~, ~~containing "STRUCTURE_3ss2"~~, ~~creates the "Structure Box" on the page~~.	+
-	~~You may change the PDB parameter~~ (~~which sets the PDB file loaded into the applet)~~	+
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded~~),	+
-	~~or leave the SCENE parameter empty for the default display~~.	+
-	-->	+
-	~~{{STRUCTURE_3ss2\| PDB=3ss2 \| SCENE= }}~~	+

-	~~===Neutron structure~~ of ~~perdeuterated rubredoxin using 48 hours 3rd pass data===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-		+	== References ==
-	~~<!--~~	+	<references/>
-	~~The line below this paragraph, {{ABSTRACT_PUBMED_22194331}}, adds~~ the ~~Publication Abstract to the page~~	+	__TOC__
-	~~(as it appears on PubMed at http://www~~.~~pubmed~~.~~gov), where 22194331 is the PubMed ID number~~.	+	</StructureSection>
-	-->	+
-	~~{{ABSTRACT_PUBMED_22194331}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3ss2]] is a 1 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SS2 OCA].~~	+
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:022194331<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Pyrococcus furiosus dsm 3638]]		[[Category: Pyrococcus furiosus dsm 3638]]
	[[Category: Blakeley, M P.]]		[[Category: Blakeley, M P.]]

OCA at 05:32, 4 January 2012

OCA — Wed, 04 Jan 2012 05:32:51 GMT

←Older revision		Revision as of 05:32, 4 January 2012
Line 11:		Line 11:
	===Neutron structure of perdeuterated rubredoxin using 48 hours 3rd pass data===		===Neutron structure of perdeuterated rubredoxin using 48 hours 3rd pass data===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_22194331}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 22194331 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_22194331}}

	==About this Structure==		==About this Structure==
	[[3ss2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SS2 OCA].		[[3ss2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SS2 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:022194331</ref><references group="xtra"/>
	[[Category: Pyrococcus furiosus dsm 3638]]		[[Category: Pyrococcus furiosus dsm 3638]]
	[[Category: Blakeley, M P.]]		[[Category: Blakeley, M P.]]

OCA at 07:39, 28 December 2011

OCA — Wed, 28 Dec 2011 07:39:26 GMT

←Older revision		Revision as of 07:39, 28 December 2011
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3ss2.jpg\|left\|200px]]

-	The ~~entry 3ss2~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3ss2", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3ss2\| PDB=3ss2 \| SCENE= }}

-	~~Authors: Munshi, P., Chung, C.-L., Blakeley, M.P., Weiss, K.L., Myles, D.A.A., Meilleur, F.~~	+	===Neutron structure of perdeuterated rubredoxin using 48 hours 3rd pass data===

-	~~Description: Neutron~~ structure ~~of perdeuterated rubredoxin using 48 hours 3rd pass data~~	+
		+	==About this Structure==
		+	[[3ss2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SS2 OCA].
		+	[[Category: Pyrococcus furiosus dsm 3638]]
		+	[[Category: Blakeley, M P.]]
		+	[[Category: Chung, C L.]]
		+	[[Category: Meilleur, F.]]
		+	[[Category: Munshi, P.]]
		+	[[Category: Myles, D A.A.]]
		+	[[Category: Weiss, K L.]]
		+	[[Category: Electron transport]]
		+	[[Category: Iron]]
		+	[[Category: Metal-binding]]
		+	[[Category: Transport]]

OCA at 05:41, 27 July 2011

OCA — Wed, 27 Jul 2011 05:41:38 GMT

←Older revision		Revision as of 05:41, 27 July 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3ss2 is ON HOLD	+	The entry 3ss2 is ON HOLD until Paper Publication

-	Authors: Munshi, P., Chung, C-L. , Blakeley, M. P., Weiss, K. L., Myles, D. A. A., Meilleur, F.	+	Authors: Munshi, P., Chung, C.-L., Blakeley, M.P., Weiss, K.L., Myles, D.A.A., Meilleur, F.

-	Description: ~~neutron~~ structure of ~~PERDEUTERATED RUBREDOXIN~~ using 48 hours 3rd pass data	+	Description: Neutron structure of perdeuterated rubredoxin using 48 hours 3rd pass data

OCA: Protected "3ss2" [edit=sysop:move=sysop]

OCA — Wed, 13 Jul 2011 06:56:28 GMT

Protected "3ss2" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:56, 13 July 2011

OCA: New page: '''Unreleased structure''' The entry 3ss2 is ON HOLD Authors: Munshi, P., Chung, C-L. , Blakeley, M. P., Weiss, K. L., Myles, D. A. A., Meilleur, F. Description: neutron structure of P...

OCA — Wed, 13 Jul 2011 06:56:27 GMT

New page: '''Unreleased structure''' The entry 3ss2 is ON HOLD Authors: Munshi, P., Chung, C-L. , Blakeley, M. P., Weiss, K. L., Myles, D. A. A., Meilleur, F. Description: neutron structure of P...

New page

'''Unreleased structure'''

The entry 3ss2 is ON HOLD

Authors: Munshi, P., Chung, C-L. , Blakeley, M. P., Weiss, K. L., Myles, D. A. A., Meilleur, F.

Description: neutron structure of PERDEUTERATED RUBREDOXIN using 48 hours 3rd pass data