3t4r - Revision history

OCA at 16:42, 6 July 2022

OCA — Wed, 06 Jul 2022 16:42:57 GMT

←Older revision		Revision as of 16:42, 6 July 2022
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	==Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain==		==Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain==
-	<StructureSection load='3t4r' size='340' side='right' caption='[[3t4r]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='3t4r' size='340' side='right'caption='[[3t4r]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3t4r]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Lnyv Lnyv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T4R OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3T4R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3t4r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lnyv Lnyv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T4R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T4R FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">P ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=928304 LNYV])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">P ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=928304 LNYV])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3t4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t4r OCA], [~~http~~://pdbe.org/3t4r PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3t4r RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3t4r PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3t4r ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t4r OCA], [https://pdbe.org/3t4r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t4r RCSB], [https://www.ebi.ac.uk/pdbsum/3t4r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t4r ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/VP4A_LNYV3 VP4A_LNYV3]] Non catalytic polymerase cofactor and regulatory protein that plays a role in viral transcription and replication. Stabilizes the RNA polymerase L to the N-RNA template and binds the soluble protein N, preventing it from encapsidating non-genomic RNA (By similarity).	+	[[https://www.uniprot.org/uniprot/VP4A_LNYV3 VP4A_LNYV3]] Non catalytic polymerase cofactor and regulatory protein that plays a role in viral transcription and replication. Stabilizes the RNA polymerase L to the N-RNA template and binds the soluble protein N, preventing it from encapsidating non-genomic RNA (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Lnyv]]		[[Category: Lnyv]]
	[[Category: Jamin, M]]		[[Category: Jamin, M]]

OCA at 12:53, 4 August 2016

OCA — Thu, 04 Aug 2016 12:53:11 GMT

←Older revision		Revision as of 12:53, 4 August 2016
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		+
	==Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain==		==Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain==
	<StructureSection load='3t4r' size='340' side='right' caption='[[3t4r]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3t4r' size='340' side='right' caption='[[3t4r]], [[Resolution\|resolution]] 2.00Å' scene=''>
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	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">P ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=928304 LNYV])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">P ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=928304 LNYV])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3t4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t4r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3t4r RCSB], [http://www.ebi.ac.uk/pdbsum/3t4r PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3t4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t4r OCA], [http://pdbe.org/3t4r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3t4r RCSB], [http://www.ebi.ac.uk/pdbsum/3t4r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3t4r ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3t4r" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 09:28, 25 December 2014

OCA — Thu, 25 Dec 2014 09:28:43 GMT

←Older revision		Revision as of 09:28, 25 December 2014
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-	~~{{STRUCTURE_3t4r\| PDB=3t4r \| SCENE= }}~~	+	==Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain==
-	===Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain===	+	<StructureSection load='3t4r' size='340' side='right' caption='[[3t4r]], [[Resolution\|resolution]] 2.00Å' scene=''>
-	~~{{ABSTRACT_PUBMED_23785215}}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3t4r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lnyv Lnyv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T4R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3T4R FirstGlance]. <br>
-	==Function==	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">P ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=928304 LNYV])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3t4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t4r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3t4r RCSB], [http://www.ebi.ac.uk/pdbsum/3t4r PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
	[[http://www.uniprot.org/uniprot/VP4A_LNYV3 VP4A_LNYV3]] Non catalytic polymerase cofactor and regulatory protein that plays a role in viral transcription and replication. Stabilizes the RNA polymerase L to the N-RNA template and binds the soluble protein N, preventing it from encapsidating non-genomic RNA (By similarity).		[[http://www.uniprot.org/uniprot/VP4A_LNYV3 VP4A_LNYV3]] Non catalytic polymerase cofactor and regulatory protein that plays a role in viral transcription and replication. Stabilizes the RNA polymerase L to the N-RNA template and binds the soluble protein N, preventing it from encapsidating non-genomic RNA (By similarity).
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Lettuce necrotic yellows virus (LNYV) is a prototype of the plant-adapted cytorhabdoviruses. Through a meta-prediction of disorder, we localized a folded C-terminal domain in the amino acid sequence of its phosphoprotein. This domain consists of an autonomous folding unit that is monomeric in solution. Its structure, solved by X-ray crystallography, reveals a lollipop-shaped structure comprising five helices. The structure is different from that of the corresponding domains of other Rhabdoviridae, Filoviridae, and Paramyxovirinae; only the overall topology of the polypeptide chain seems to be conserved, suggesting that this domain evolved under weak selective pressure and varied in size by the acquisition or loss of functional modules.

-	~~==About this~~ Structure==	+	Structure of the C-terminal domain of lettuce necrotic yellows virus phosphoprotein.,Martinez N, Ribeiro EA Jr, Leyrat C, Tarbouriech N, Ruigrok RW, Jamin M J Virol. 2013 Sep;87(17):9569-78. doi: 10.1128/JVI.00999-13. Epub 2013 Jun 19. PMID:23785215<ref>PMID:23785215</ref>
-	~~[[3t4r]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Lnyv Lnyv]~~. ~~Full crystallographic information is available from [http~~:/~~/oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=3T4R OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:023785215</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Lnyv]]		[[Category: Lnyv]]
-	[[Category: Jamin, M.]]	+	[[Category: Jamin, M]]
-	[[Category: Martinez, N.]]	+	[[Category: Martinez, N]]
-	[[Category: Tarbouriech, N.]]	+	[[Category: Tarbouriech, N]]
	[[Category: Helical bundle]]		[[Category: Helical bundle]]
	[[Category: Nucleoprotein]]		[[Category: Nucleoprotein]]
	[[Category: Viral protein]]		[[Category: Viral protein]]

OCA at 06:51, 26 March 2014

OCA — Wed, 26 Mar 2014 06:51:34 GMT

←Older revision		Revision as of 06:51, 26 March 2014
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-	[[Image:3t4r.jpg\|left\|200px]]
-
	{{STRUCTURE_3t4r\| PDB=3t4r \| SCENE= }}		{{STRUCTURE_3t4r\| PDB=3t4r \| SCENE= }}
-
	===Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain===		===Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain===
		+	{{ABSTRACT_PUBMED_23785215}}

		+	==Function==
		+	[[http://www.uniprot.org/uniprot/VP4A_LNYV3 VP4A_LNYV3]] Non catalytic polymerase cofactor and regulatory protein that plays a role in viral transcription and replication. Stabilizes the RNA polymerase L to the N-RNA template and binds the soluble protein N, preventing it from encapsidating non-genomic RNA (By similarity).

	==About this Structure==		==About this Structure==
-	[[3t4r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Lettuce_necrotic_yellows_virus_isolate_318 Lettuce necrotic yellows virus isolate 318~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T4R OCA].	+	[[3t4r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lnyv Lnyv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T4R OCA].
-	[[Category: ~~Lettuce necrotic yellows virus isolate 318~~]]	+
		+	==Reference==
		+	<ref group="xtra">PMID:023785215</ref><references group="xtra"/><references/>
		+	[[Category: Lnyv]]
	[[Category: Jamin, M.]]		[[Category: Jamin, M.]]
	[[Category: Martinez, N.]]		[[Category: Martinez, N.]]

OCA at 12:35, 30 January 2013

OCA — Wed, 30 Jan 2013 12:35:14 GMT

←Older revision		Revision as of 12:35, 30 January 2013
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-	~~'''Unreleased structure'''~~	+	[[Image:3t4r.jpg\|left\|200px]]

-	~~The entry~~ 3t4r ~~is ON HOLD~~ ~~until Jan 26 2014~~	+	{{STRUCTURE_3t4r\| PDB=3t4r \| SCENE= }}

-	~~Authors: Martinez, N., Tarbouriech, N., Jamin, M.~~	+	===Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain===

-	~~Description~~: Lettuce ~~Necrotic Yellow Virus Phosphoprotein C~~-~~Terminal Domain~~	+
		+	==About this Structure==
		+	[[3t4r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lettuce_necrotic_yellows_virus_isolate_318 Lettuce necrotic yellows virus isolate 318]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T4R OCA].
		+	[[Category: Lettuce necrotic yellows virus isolate 318]]
		+	[[Category: Jamin, M.]]
		+	[[Category: Martinez, N.]]
		+	[[Category: Tarbouriech, N.]]
		+	[[Category: Helical bundle]]
		+	[[Category: Nucleoprotein]]
		+	[[Category: Viral protein]]

OCA at 07:02, 4 July 2012

OCA — Wed, 04 Jul 2012 07:02:13 GMT

←Older revision		Revision as of 07:02, 4 July 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3t4r is ON HOLD until ~~Paper Publication~~	+	The entry 3t4r is ON HOLD until Jan 26 2014

	Authors: Martinez, N., Tarbouriech, N., Jamin, M.		Authors: Martinez, N., Tarbouriech, N., Jamin, M.

	Description: Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain		Description: Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain

OCA at 06:00, 14 March 2012

OCA — Wed, 14 Mar 2012 06:00:15 GMT

←Older revision		Revision as of 06:00, 14 March 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3t4r is ON HOLD	+	The entry 3t4r is ON HOLD until Paper Publication

	Authors: Martinez, N., Tarbouriech, N., Jamin, M.		Authors: Martinez, N., Tarbouriech, N., Jamin, M.

	Description: Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain		Description: Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain

OCA at 05:34, 10 August 2011

OCA — Wed, 10 Aug 2011 05:34:13 GMT

←Older revision		Revision as of 05:34, 10 August 2011
Line 3:		Line 3:
	The entry 3t4r is ON HOLD		The entry 3t4r is ON HOLD

-	Authors: Martinez, N, Tarbouriech, N, Jamin, M	+	Authors: Martinez, N., Tarbouriech, N., Jamin, M.

	Description: Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain		Description: Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain

OCA: Protected "3t4r" [edit=sysop:move=sysop]

OCA — Wed, 03 Aug 2011 08:27:00 GMT

Protected "3t4r" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:27, 3 August 2011

OCA: New page: '''Unreleased structure''' The entry 3t4r is ON HOLD Authors: Martinez, N, Tarbouriech, N, Jamin, M Description: Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain

OCA — Wed, 03 Aug 2011 08:26:59 GMT

New page: '''Unreleased structure''' The entry 3t4r is ON HOLD Authors: Martinez, N, Tarbouriech, N, Jamin, M Description: Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain

New page

'''Unreleased structure'''

The entry 3t4r is ON HOLD

Authors: Martinez, N, Tarbouriech, N, Jamin, M

Description: Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain