3tvz - Revision history

OCA at 05:47, 13 July 2022

OCA — Wed, 13 Jul 2022 05:47:38 GMT

←Older revision		Revision as of 05:47, 13 July 2022
Line 3:		Line 3:
	<StructureSection load='3tvz' size='340' side='right'caption='[[3tvz]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3tvz' size='340' side='right'caption='[[3tvz]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3tvz]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bacpz Bacpz]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TVZ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3TVZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3tvz]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacpz Bacpz]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TVZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TVZ FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yhgC, BSUW23_05110 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=655816 BACPZ])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yhgC, BSUW23_05110 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=655816 BACPZ])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3tvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tvz OCA], [~~http~~://pdbe.org/3tvz PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3tvz RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3tvz PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3tvz ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3tvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tvz OCA], [https://pdbe.org/3tvz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3tvz RCSB], [https://www.ebi.ac.uk/pdbsum/3tvz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3tvz ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 05:40, 10 October 2019

OCA — Thu, 10 Oct 2019 05:40:58 GMT

←Older revision		Revision as of 05:40, 10 October 2019
Line 1:		Line 1:

	==Structure of Bacillus subtilis HmoB==		==Structure of Bacillus subtilis HmoB==
-	<StructureSection load='3tvz' size='340' side='right' caption='[[3tvz]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='3tvz' size='340' side='right'caption='[[3tvz]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3tvz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacpz Bacpz]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TVZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TVZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[3tvz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacpz Bacpz]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TVZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TVZ FirstGlance]. <br>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Bacpz]]		[[Category: Bacpz]]
		+	[[Category: Large Structures]]
	[[Category: Choe, J]]		[[Category: Choe, J]]
	[[Category: Choi, S]]		[[Category: Choi, S]]

OCA at 16:25, 11 August 2016

OCA — Thu, 11 Aug 2016 16:25:47 GMT

←Older revision		Revision as of 16:25, 11 August 2016
Line 1:		Line 1:
		+
	==Structure of Bacillus subtilis HmoB==		==Structure of Bacillus subtilis HmoB==
	<StructureSection load='3tvz' size='340' side='right' caption='[[3tvz]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3tvz' size='340' side='right' caption='[[3tvz]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3tvz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_subtilis_subsp._spizizenii Bacillus subtilis subsp. spizizenii~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TVZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TVZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3tvz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacpz Bacpz]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TVZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TVZ FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yhgC, BSUW23_05110 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~96241 Bacillus subtilis subsp. spizizenii~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yhgC, BSUW23_05110 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=655816 BACPZ])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3tvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tvz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3tvz RCSB], [http://www.ebi.ac.uk/pdbsum/3tvz PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3tvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tvz OCA], [http://pdbe.org/3tvz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3tvz RCSB], [http://www.ebi.ac.uk/pdbsum/3tvz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3tvz ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3tvz" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus subtilis subsp. spizizenii~~]]	+	[[Category: Bacpz]]
	[[Category: Choe, J]]		[[Category: Choe, J]]
	[[Category: Choi, S]]		[[Category: Choi, S]]

OCA at 09:50, 4 January 2015

OCA — Sun, 04 Jan 2015 09:50:12 GMT

←Older revision		Revision as of 09:50, 4 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3tvz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._spizizenii Bacillus subtilis subsp. spizizenii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TVZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TVZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[3tvz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._spizizenii Bacillus subtilis subsp. spizizenii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TVZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TVZ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yhgC, BSUW23_05110 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=96241 Bacillus subtilis subsp. spizizenii])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yhgC, BSUW23_05110 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=96241 Bacillus subtilis subsp. spizizenii])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3tvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tvz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3tvz RCSB], [http://www.ebi.ac.uk/pdbsum/3tvz PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3tvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tvz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3tvz RCSB], [http://www.ebi.ac.uk/pdbsum/3tvz PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 13:		Line 13:
	Bacillus subtilis HmoB is a heme oxygenase with a novel structure.,Park S, Choi S, Choe J BMB Rep. 2012 Apr;45(4):239-41. PMID:22531134<ref>PMID:22531134</ref>		Bacillus subtilis HmoB is a heme oxygenase with a novel structure.,Park S, Choi S, Choe J BMB Rep. 2012 Apr;45(4):239-41. PMID:22531134<ref>PMID:22531134</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus subtilis subsp. spizizenii]]		[[Category: Bacillus subtilis subsp. spizizenii]]
-	[[Category: Choe, J.]]	+	[[Category: Choe, J]]
-	[[Category: Choi, S.]]	+	[[Category: Choi, S]]
-	[[Category: Park, S.]]	+	[[Category: Park, S]]
	[[Category: Abm family]]		[[Category: Abm family]]
	[[Category: Ferredoxin fold]]		[[Category: Ferredoxin fold]]

OCA at 06:25, 5 June 2014

OCA — Thu, 05 Jun 2014 06:25:06 GMT

←Older revision		Revision as of 06:25, 5 June 2014
Line 1:		Line 1:
-	[[~~Image:~~3tvz.~~png~~\|~~left~~\|~~200px~~]]	+	==Structure of Bacillus subtilis HmoB==
		+	<StructureSection load='3tvz' size='340' side='right' caption='[[3tvz]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3tvz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._spizizenii Bacillus subtilis subsp. spizizenii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TVZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TVZ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yhgC, BSUW23_05110 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=96241 Bacillus subtilis subsp. spizizenii])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3tvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tvz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3tvz RCSB], [http://www.ebi.ac.uk/pdbsum/3tvz PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Iron availability is limited in the environment and most bacteria have developed a system to acquire iron from host hemoproteins. Heme oxygenase plays an important role by degrading heme group and releasing the essential nutrient iron. The structure of Bacillus subtilis HmoB was determined to 2.0 A resolution. B. subtilis HmoB contains a typical antibiotic biosynthesis monooxygenase (ABM) domain that spans from 71 to 146 residues and belongs to the IsdG family heme oxygenases. Comparison of HmoB and IsdG family proteins showed that the C-terminal region of HmoB has similar sequence and structure to IsdG family proteins and contains conserved critical residues for heme degradation. However, HmoB is distinct from other IsdG family proteins in that HmoB is about 60 amino acids longer in the N-terminus and does not form a dimer whereas previously studied IsdG family heme oxygenases form functional homodimers. Interestingly, the structure of monomeric HmoB resembles the dimeric structure of IsdG family proteins. Hence, B. subtilis HmoB is a heme oxygenase with a novel structural feature.

-	~~{{STRUCTURE_3tvz\| PDB=3tvz \| SCENE= }}~~	+	Bacillus subtilis HmoB is a heme oxygenase with a novel structure.,Park S, Choi S, Choe J BMB Rep. 2012 Apr;45(4):239-41. PMID:22531134<ref>PMID:22531134</ref>

-	~~===Structure~~ of ~~Bacillus subtilis HmoB===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_22531134}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[3tvz]] is a 3 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Bacillus_subtilis_subsp~~.~~_spizizenii Bacillus subtilis subsp. spizizenii]. Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3TVZ OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:022531134<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Bacillus subtilis subsp. spizizenii]]		[[Category: Bacillus subtilis subsp. spizizenii]]
	[[Category: Choe, J.]]		[[Category: Choe, J.]]

OCA at 04:33, 18 July 2012

OCA — Wed, 18 Jul 2012 04:33:33 GMT

←Older revision		Revision as of 04:33, 18 July 2012
Line 1:		Line 1:
-	[[Image:3tvz.~~jpg~~\|left\|200px]]	+	[[Image:3tvz.png\|left\|200px]]

	{{STRUCTURE_3tvz\| PDB=3tvz \| SCENE= }}		{{STRUCTURE_3tvz\| PDB=3tvz \| SCENE= }}
Line 17:		Line 17:
	[[Category: Park, S.]]		[[Category: Park, S.]]
	[[Category: Abm family]]		[[Category: Abm family]]
-	[[Category: Antibiotic]]
	[[Category: Ferredoxin fold]]		[[Category: Ferredoxin fold]]
	[[Category: Monooxygenase]]		[[Category: Monooxygenase]]
		+	[[Category: Oxidoreductase]]
	[[Category: Putative monooxygenase]]		[[Category: Putative monooxygenase]]

OCA at 08:12, 11 July 2012

OCA — Wed, 11 Jul 2012 08:12:14 GMT

←Older revision		Revision as of 08:12, 11 July 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3tvz.jpg\|left\|200px]]

-	~~The entry~~ 3tvz ~~is ON HOLD~~ ~~until Paper Publication~~	+	{{STRUCTURE_3tvz\| PDB=3tvz \| SCENE= }}

-	~~Authors: Choe, J., Choi, S., Park, S.~~	+	===Structure of Bacillus subtilis HmoB===

-	~~Description:~~ Structure of Bacillus subtilis ~~YhgC~~	+	{{ABSTRACT_PUBMED_22531134}}
		+
		+	==About this Structure==
		+	[[3tvz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._spizizenii Bacillus subtilis subsp. spizizenii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TVZ OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:022531134</ref><references group="xtra"/>
		+	[[Category: Bacillus subtilis subsp. spizizenii]]
		+	[[Category: Choe, J.]]
		+	[[Category: Choi, S.]]
		+	[[Category: Park, S.]]
		+	[[Category: Abm family]]
		+	[[Category: Antibiotic]]
		+	[[Category: Ferredoxin fold]]
		+	[[Category: Monooxygenase]]
		+	[[Category: Putative monooxygenase]]

OCA at 07:32, 7 December 2011

OCA — Wed, 07 Dec 2011 07:32:17 GMT

←Older revision		Revision as of 07:32, 7 December 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3tvz is ON HOLD	+	The entry 3tvz is ON HOLD until Paper Publication

	Authors: Choe, J., Choi, S., Park, S.		Authors: Choe, J., Choi, S., Park, S.

	Description: Structure of Bacillus subtilis YhgC		Description: Structure of Bacillus subtilis YhgC

OCA at 08:44, 30 October 2011

OCA — Sun, 30 Oct 2011 08:44:39 GMT

←Older revision		Revision as of 08:44, 30 October 2011
Line 3:		Line 3:
	The entry 3tvz is ON HOLD		The entry 3tvz is ON HOLD

-	Authors: Choe, J, Choi, S, Park, S	+	Authors: Choe, J., Choi, S., Park, S.

	Description: Structure of Bacillus subtilis YhgC		Description: Structure of Bacillus subtilis YhgC

OCA: Protected "3tvz" [edit=sysop:move=sysop]

OCA — Wed, 28 Sep 2011 05:18:44 GMT

Protected "3tvz" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:18, 28 September 2011