3u7i - Revision history

OCA at 06:01, 13 July 2022

OCA — Wed, 13 Jul 2022 06:01:15 GMT

←Older revision		Revision as of 06:01, 13 July 2022
Line 1:		Line 1:
		+
	==The crystal structure of FMN-dependent NADH-azoreductase 1 (GBAA0966) from Bacillus anthracis str. Ames Ancestor==		==The crystal structure of FMN-dependent NADH-azoreductase 1 (GBAA0966) from Bacillus anthracis str. Ames Ancestor==
-	<StructureSection load='3u7i' size='340' side='right' caption='[[3u7i]], [[Resolution\|resolution]] 1.75Å' scene=''>	+	<StructureSection load='3u7i' size='340' side='right'caption='[[3u7i]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3u7i]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bacillus_anthracis_ames_"ancestor" Bacillus anthracis ames "ancestor"]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U7I OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3U7I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3u7i]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis_ames_"ancestor" Bacillus anthracis ames "ancestor"]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U7I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3U7I FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">azoR1, Bacillus anthracis, BAS0908, BA_0966, GBAA_0966 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=261594 Bacillus anthracis Ames "Ancestor"])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">azoR1, Bacillus anthracis, BAS0908, BA_0966, GBAA_0966 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=261594 Bacillus anthracis Ames "Ancestor"])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3u7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3u7i OCA], [~~http~~://pdbe.org/3u7i PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3u7i RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3u7i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3u7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3u7i OCA], [https://pdbe.org/3u7i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3u7i RCSB], [https://www.ebi.ac.uk/pdbsum/3u7i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3u7i ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/AZOR1_BACAN AZOR1_BACAN]] Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity (By similarity).	+	[[https://www.uniprot.org/uniprot/AZOR1_BACAN AZOR1_BACAN]] Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity (By similarity).
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Bacillus anthracis ames ancestor]]		[[Category: Bacillus anthracis ames ancestor]]
		+	[[Category: Large Structures]]
	[[Category: Anderson, W F]]		[[Category: Anderson, W F]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 07:43, 16 December 2015

OCA — Wed, 16 Dec 2015 07:43:39 GMT

←Older revision		Revision as of 07:43, 16 December 2015
Line 2:		Line 2:
	<StructureSection load='3u7i' size='340' side='right' caption='[[3u7i]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='3u7i' size='340' side='right' caption='[[3u7i]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3u7i]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_anthracis~~ Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U7I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3U7I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3u7i]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis_ames_"ancestor" Bacillus anthracis ames "ancestor"]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U7I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3U7I FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">azoR1, Bacillus anthracis, BAS0908, BA_0966, GBAA_0966 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~1392~~ Bacillus anthracis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">azoR1, Bacillus anthracis, BAS0908, BA_0966, GBAA_0966 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=261594 Bacillus anthracis Ames "Ancestor"])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3u7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3u7i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3u7i RCSB], [http://www.ebi.ac.uk/pdbsum/3u7i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3u7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3u7i OCA], [http://pdbe.org/3u7i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3u7i RCSB], [http://www.ebi.ac.uk/pdbsum/3u7i PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 12:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus anthracis]]	+	[[Category: Bacillus anthracis ames ancestor]]
	[[Category: Anderson, W F]]		[[Category: Anderson, W F]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 05:29, 25 December 2014

OCA — Thu, 25 Dec 2014 05:29:09 GMT

←Older revision		Revision as of 05:29, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3u7i]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U7I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3U7I FirstGlance]. <br>		<table><tr><td colspan='2'>[[3u7i]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U7I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3U7I FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">azoR1, Bacillus anthracis, BAS0908, BA_0966, GBAA_0966 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1392 Bacillus anthracis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">azoR1, Bacillus anthracis, BAS0908, BA_0966, GBAA_0966 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1392 Bacillus anthracis])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3u7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3u7i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3u7i RCSB], [http://www.ebi.ac.uk/pdbsum/3u7i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3u7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3u7i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3u7i RCSB], [http://www.ebi.ac.uk/pdbsum/3u7i PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/AZOR1_BACAN AZOR1_BACAN]] Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity (By similarity).
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Bacillus anthracis]]		[[Category: Bacillus anthracis]]
-	[[Category: Anderson, W F.]]	+	[[Category: Anderson, W F]]
-	[[Category: ~~CSGID, Center for~~ Structural ~~Genomics of Infectious Diseases.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Gu, M.]]	+	[[Category: Gu, M]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: Kwon, K.]]	+	[[Category: Kwon, K]]
-	[[Category: Tan, K.]]	+	[[Category: Tan, K]]
-	[[Category: Zhang, R.]]	+	[[Category: Zhang, R]]
	[[Category: Csgid]]		[[Category: Csgid]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-	[[Category: Structural genomic]]
-	[[Category: The center for structural genomics of infectious disease]]

OCA at 06:09, 5 June 2014

OCA — Thu, 05 Jun 2014 06:09:53 GMT

←Older revision		Revision as of 06:09, 5 June 2014
Line 1:		Line 1:
-	~~[[Image:3u7i.jpg\|left\|200px]]~~	+	==The crystal structure of FMN-dependent NADH-azoreductase 1 (GBAA0966) from Bacillus anthracis str. Ames Ancestor==
-		+	<StructureSection load='3u7i' size='340' side='right' caption='[[3u7i]], [[Resolution\|resolution]] 1.75Å' scene=''>
-	~~<!--~~	+	== Structural highlights ==
-	~~The line below this paragraph, containing "STRUCTURE_3u7i", creates the "Structure Box" on the page.~~	+	<table><tr><td colspan='2'>[[3u7i]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U7I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3U7I FirstGlance]. <br>
-	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene><br>
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~	+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~or leave the SCENE parameter empty for the default display.~~	+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">azoR1, Bacillus anthracis, BAS0908, BA_0966, GBAA_0966 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1392 Bacillus anthracis])</td></tr>
-	~~-->~~	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3u7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3u7i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3u7i RCSB], [http://www.ebi.ac.uk/pdbsum/3u7i PDBsum]</span></td></tr>
-	~~{{STRUCTURE_3u7i\| PDB=3u7i \| SCENE= }}~~	+	<table>
-		+	__TOC__
-	===The crystal structure of FMN-dependent NADH-azoreductase 1 (GBAA0966) from Bacillus anthracis str. Ames Ancestor===	+	</StructureSection>
-		+
-		+
-	==~~About this Structure~~==	+
-	[[3u7i]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U7I OCA].	+
	[[Category: Bacillus anthracis]]		[[Category: Bacillus anthracis]]
	[[Category: Anderson, W F.]]		[[Category: Anderson, W F.]]

OCA at 11:53, 9 November 2011

OCA — Wed, 09 Nov 2011 11:53:05 GMT

←Older revision		Revision as of 11:53, 9 November 2011
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3u7i.jpg\|left\|200px]]

-	The ~~entry 3u7i~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3u7i", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3u7i\| PDB=3u7i \| SCENE= }}

-	~~Authors: Zhang, R., Gu, M., Tan, K., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics~~ of ~~Infectious Diseases~~ (~~CSGID~~)	+	===The crystal structure of FMN-dependent NADH-azoreductase 1 (GBAA0966) from Bacillus anthracis str. Ames Ancestor===

-	~~Description: The crystal structure of~~ a ~~functionally unknown protein (GBAA0966)~~ from Bacillus anthracis ~~str~~. ~~Ames Ancestor~~	+
		+	==About this Structure==
		+	[[3u7i]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U7I OCA].
		+	[[Category: Bacillus anthracis]]
		+	[[Category: Anderson, W F.]]
		+	[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
		+	[[Category: Gu, M.]]
		+	[[Category: Joachimiak, A.]]
		+	[[Category: Kwon, K.]]
		+	[[Category: Tan, K.]]
		+	[[Category: Zhang, R.]]
		+	[[Category: Csgid]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Structural genomic]]
		+	[[Category: The center for structural genomics of infectious disease]]

OCA: Protected "3u7i" [edit=sysop:move=sysop]

OCA — Sun, 30 Oct 2011 08:53:56 GMT

Protected "3u7i" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:53, 30 October 2011

OCA: New page: '''Unreleased structure''' The entry 3u7i is ON HOLD Authors: Zhang, R., Gu, M., Tan, K., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases...

OCA — Sun, 30 Oct 2011 08:53:55 GMT

New page: '''Unreleased structure''' The entry 3u7i is ON HOLD Authors: Zhang, R., Gu, M., Tan, K., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases...

New page

'''Unreleased structure'''

The entry 3u7i is ON HOLD

Authors: Zhang, R., Gu, M., Tan, K., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Description: The crystal structure of a functionally unknown protein (GBAA0966) from Bacillus anthracis str. Ames Ancestor