3v48 - Revision history

OCA at 12:48, 17 January 2024

OCA — Wed, 17 Jan 2024 12:48:26 GMT

←Older revision		Revision as of 12:48, 17 January 2024
Line 3:		Line 3:
	<StructureSection load='3v48' size='340' side='right'caption='[[3v48]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3v48' size='340' side='right'caption='[[3v48]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3v48]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Ecose Ecose~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V48 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V48 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3v48]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_SE11 Escherichia coli SE11]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V48 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V48 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~, ~~<scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
-	<~~tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">ECSE_1071, rutD ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=409438 ECOSE])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v48 OCA], [https://pdbe.org/3v48 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v48 RCSB], [https://www.ebi.ac.uk/pdbsum/3v48 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v48 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v48 OCA], [https://pdbe.org/3v48 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v48 RCSB], [https://www.ebi.ac.uk/pdbsum/3v48 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v48 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/RUTD_ECOSE RUTD_ECOSE]] May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation (By similarity).	+	[https://www.uniprot.org/uniprot/RUTD_ECOSE RUTD_ECOSE] May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ecose~~]]	+	[[Category: Escherichia coli SE11]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Almo~~, S C~~]]	+	[[Category: Almo SC]]
-	[[Category: Chruszcz, M]]	+	[[Category: Chruszcz M]]
-	[[Category: Cooper~~, D R~~]]	+	[[Category: Cooper DR]]
-	[[Category: Cymborowski~~, M T~~]]	+	[[Category: Cymborowski MT]]
-	[[Category: Knapik~~, A A~~]]	+	[[Category: Knapik AA]]
-	[[Category: Minor, W]]	+	[[Category: Minor W]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Niedzialkowska E]]
-	[[Category: Niedzialkowska, E]]	+	[[Category: Otwinowski Z]]
-	[[Category: Otwinowski, Z]]	+	[[Category: Petkowski JJ]]
-	[[Category: Petkowski~~, J J~~]]	+	[[Category: Porebski PJ]]
-	[[Category: Porebski~~, P J]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Nysgrc]]~~	+
-	~~[[Category: Psi-biology~~]]	+

OCA at 10:01, 13 April 2022

OCA — Wed, 13 Apr 2022 10:01:16 GMT

←Older revision		Revision as of 10:01, 13 April 2022
Line 1:		Line 1:

	==Crystal Structure of the putative alpha/beta hydrolase RutD from E.coli==		==Crystal Structure of the putative alpha/beta hydrolase RutD from E.coli==
-	<StructureSection load='3v48' size='340' side='right' caption='[[3v48]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='3v48' size='340' side='right'caption='[[3v48]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3v48]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Ecose Ecose]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V48 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3V48 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3v48]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecose Ecose]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V48 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V48 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ECSE_1071, rutD ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=409438 ECOSE])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ECSE_1071, rutD ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=409438 ECOSE])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3v48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v48 OCA], [~~http~~://pdbe.org/3v48 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3v48 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3v48 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3v48 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v48 OCA], [https://pdbe.org/3v48 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v48 RCSB], [https://www.ebi.ac.uk/pdbsum/3v48 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v48 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/RUTD_ECOSE RUTD_ECOSE]] May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation (By similarity).	+	[[https://www.uniprot.org/uniprot/RUTD_ECOSE RUTD_ECOSE]] May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 25:		Line 25:
	</StructureSection>		</StructureSection>
	[[Category: Ecose]]		[[Category: Ecose]]
		+	[[Category: Large Structures]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Chruszcz, M]]		[[Category: Chruszcz, M]]

OCA at 08:18, 5 August 2016

OCA — Fri, 05 Aug 2016 08:18:22 GMT

←Older revision		Revision as of 08:18, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal Structure of the putative alpha/beta hydrolase RutD from E.coli==		==Crystal Structure of the putative alpha/beta hydrolase RutD from E.coli==
	<StructureSection load='3v48' size='340' side='right' caption='[[3v48]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3v48' size='340' side='right' caption='[[3v48]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3v48]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli_se11 Escherichia coli se11~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V48 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3V48 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3v48]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecose Ecose]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V48 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3V48 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ECSE_1071, rutD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=409438 ~~Escherichia coli SE11~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ECSE_1071, rutD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=409438 ECOSE])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v48 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v48 RCSB], [http://www.ebi.ac.uk/pdbsum/3v48 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v48 OCA], [http://pdbe.org/3v48 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3v48 RCSB], [http://www.ebi.ac.uk/pdbsum/3v48 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3v48 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 19:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3v48" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia coli se11~~]]	+	[[Category: Ecose]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Chruszcz, M]]		[[Category: Chruszcz, M]]

OCA at 17:12, 25 December 2014

OCA — Thu, 25 Dec 2014 17:12:27 GMT

←Older revision		Revision as of 17:12, 25 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v48 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v48 RCSB], [http://www.ebi.ac.uk/pdbsum/3v48 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v48 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v48 RCSB], [http://www.ebi.ac.uk/pdbsum/3v48 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RUTD_ECOSE RUTD_ECOSE]] May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 06:53, 21 December 2014

OCA — Sun, 21 Dec 2014 06:53:23 GMT

←Older revision		Revision as of 06:53, 21 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3v48\| PDB=3v48 \| SCENE= }}~~	+	==Crystal Structure of the putative alpha/beta hydrolase RutD from E.coli==
-	===Crystal Structure of the putative alpha/beta hydrolase RutD from E.coli===	+	<StructureSection load='3v48' size='340' side='right' caption='[[3v48]], [[Resolution\|resolution]] 2.10Å' scene=''>
-	~~{{ABSTRACT_PUBMED_22641504}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3v48]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_se11 Escherichia coli se11]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V48 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3V48 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ECSE_1071, rutD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=409438 Escherichia coli SE11])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v48 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v48 RCSB], [http://www.ebi.ac.uk/pdbsum/3v48 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The rut pathway of pyrimidine catabolism is a novel pathway that allows pyrimidine bases to serve as the sole nitrogen source in suboptimal temperatures. The rut operon in E. coli evaded detection until 2006, yet consists of seven proteins named RutA, RutB, etc. through RutG. The operon is comprised of a pyrimidine transporter and six enzymes that cleave and further process the uracil ring. Herein, we report the structure of RutD, a member of the alpha/beta hydrolase superfamily, which is proposed to enhance the rate of hydrolysis of aminoacrylate, a toxic side product of uracil degradation, to malonic semialdehyde. Although this reaction will occur spontaneously in water, the toxicity of aminoacrylate necessitates catalysis by RutD for efficient growth with uracil as a nitrogen source. RutD has a novel and conserved arrangement of residues corresponding to the alpha/beta hydrolase active site, where the nucleophile's spatial position occupied by Ser, Cys or Asp of the canonical catalytic triad is replaced by histidine. We have used a combination of crystallographic structure determination, modeling and bioinformatics, to propose a novel mechanism for this enzyme. This approach also revealed that RutD represents a previously undescribed family within the alpha/beta hydrolases. We compare and contrast RutD with PcaD, which is the closest structural homolog to RutD. PcaD is a 3-oxoadipate-enol-lactonase- with a classic arrangement of residues in the active site. We have modeled a substrate in the PcaD active site and proposed a reaction mechanism. Proteins 2012. (c) 2012 Wiley Periodicals, Inc.

-	~~==Function==~~	+	A multi-faceted analysis of RutD reveals a novel family of alpha/beta hydrolases.,Knapik AA, Petkowski JJ, Otwinowski Z, Cymborowski MT, Cooper DR, Majorek KA, Chruszcz M, Krajewska WM, Minor W Proteins. 2012 May 29. doi: 10.1002/prot.24122. PMID:22641504<ref>PMID:22641504</ref>
-	~~[[http:~~/~~/www~~.~~uniprot~~.~~org/uniprot/RUTD_ECOSE RUTD_ECOSE]]~~ May ~~increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde~~. ~~Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation (By similarity)~~.	+

-	~~==About this Structure==~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[3v48]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Escherichia_coli_se11 Escherichia coli se11]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3V48 OCA].~~	+	</div>
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	~~<ref group="xtra">PMID:022641504</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli se11]]		[[Category: Escherichia coli se11]]
-	[[Category: Almo, S C.]]	+	[[Category: Almo, S C]]
-	[[Category: Chruszcz, M.]]	+	[[Category: Chruszcz, M]]
-	[[Category: Cooper, D R.]]	+	[[Category: Cooper, D R]]
-	[[Category: Cymborowski, M T.]]	+	[[Category: Cymborowski, M T]]
-	[[Category: Knapik, A A.]]	+	[[Category: Knapik, A A]]
-	[[Category: Minor, W.]]	+	[[Category: Minor, W]]
-	[[Category: ~~NYSGRC, New York~~ Structural ~~Genomics Research Consortium.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Niedzialkowska, E.]]	+	[[Category: Niedzialkowska, E]]
-	[[Category: Otwinowski, Z.]]	+	[[Category: Otwinowski, Z]]
-	[[Category: Petkowski, J J.]]	+	[[Category: Petkowski, J J]]
-	[[Category: Porebski, P J.]]	+	[[Category: Porebski, P J]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
-	[[Category: New york structural genomics research consortium]]
	[[Category: Nysgrc]]		[[Category: Nysgrc]]
	[[Category: Psi-biology]]		[[Category: Psi-biology]]
-	[[Category: Structural genomic]]

OCA at 05:34, 28 August 2013

OCA — Wed, 28 Aug 2013 05:34:33 GMT

←Older revision		Revision as of 05:34, 28 August 2013
Line 1:		Line 1:
-	[[Image:3v48.png\|left\|200px]]
-
	{{STRUCTURE_3v48\| PDB=3v48 \| SCENE= }}		{{STRUCTURE_3v48\| PDB=3v48 \| SCENE= }}
-
	===Crystal Structure of the putative alpha/beta hydrolase RutD from E.coli===		===Crystal Structure of the putative alpha/beta hydrolase RutD from E.coli===
		+	{{ABSTRACT_PUBMED_22641504}}

-	~~{{ABSTRACT_PUBMED_22641504}}~~	+	==Function==
		+	[[http://www.uniprot.org/uniprot/RUTD_ECOSE RUTD_ECOSE]] May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation (By similarity).

	==About this Structure==		==About this Structure==
Line 11:		Line 10:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:022641504</ref><references group="xtra"/>	+	<ref group="xtra">PMID:022641504</ref><references group="xtra"/><references/>
	[[Category: Escherichia coli se11]]		[[Category: Escherichia coli se11]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]

OCA at 08:04, 20 June 2012

OCA — Wed, 20 Jun 2012 08:04:56 GMT

←Older revision		Revision as of 08:04, 20 June 2012
Line 1:		Line 1:
	[[Image:3v48.png\|left\|200px]]		[[Image:3v48.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3v48", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3v48\| PDB=3v48 \| SCENE= }}		{{STRUCTURE_3v48\| PDB=3v48 \| SCENE= }}

	===Crystal Structure of the putative alpha/beta hydrolase RutD from E.coli===		===Crystal Structure of the putative alpha/beta hydrolase RutD from E.coli===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_22641504}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 22641504 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_22641504}}		{{ABSTRACT_PUBMED_22641504}}

OCA at 06:41, 6 June 2012

OCA — Wed, 06 Jun 2012 06:41:45 GMT

←Older revision		Revision as of 06:41, 6 June 2012
Line 11:		Line 11:
	===Crystal Structure of the putative alpha/beta hydrolase RutD from E.coli===		===Crystal Structure of the putative alpha/beta hydrolase RutD from E.coli===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_22641504}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 22641504 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_22641504}}

	==About this Structure==		==About this Structure==
	[[3v48]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_se11 Escherichia coli se11]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V48 OCA].		[[3v48]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_se11 Escherichia coli se11]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V48 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:022641504</ref><references group="xtra"/>
	[[Category: Escherichia coli se11]]		[[Category: Escherichia coli se11]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]

OCA at 06:56, 22 February 2012

OCA — Wed, 22 Feb 2012 06:56:04 GMT

←Older revision		Revision as of 06:56, 22 February 2012
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-	~~'''Unreleased structure'''~~	+	[[Image:3v48.png\|left\|200px]]

-	The ~~entry 3v48~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3v48", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3v48\| PDB=3v48 \| SCENE= }}

-	~~Authors: Knapik, A.A., Petkowski, J.J., Otwinowski, Z., Cymborowski, M.T., Cooper, D.G., Chruszcz, M., Porebski, P.J., Niedzialkowska,~~ E.~~, Krajewska, W.M., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)~~	+	===Crystal Structure of the putative alpha/beta hydrolase RutD from E.coli===

-	~~Description: Crystal~~ Structure ~~of the putative alpha~~/~~beta hydrolase RutD~~ from E.coli	+
		+	==About this Structure==
		+	[[3v48]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_se11 Escherichia coli se11]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V48 OCA].
		+	[[Category: Escherichia coli se11]]
		+	[[Category: Almo, S C.]]
		+	[[Category: Chruszcz, M.]]
		+	[[Category: Cooper, D R.]]
		+	[[Category: Cymborowski, M T.]]
		+	[[Category: Knapik, A A.]]
		+	[[Category: Minor, W.]]
		+	[[Category: NYSGRC, New York Structural Genomics Research Consortium.]]
		+	[[Category: Niedzialkowska, E.]]
		+	[[Category: Otwinowski, Z.]]
		+	[[Category: Petkowski, J J.]]
		+	[[Category: Porebski, P J.]]
		+	[[Category: Hydrolase]]
		+	[[Category: New york structural genomics research consortium]]
		+	[[Category: Nysgrc]]
		+	[[Category: Psi-biology]]
		+	[[Category: Structural genomic]]

OCA: Protected "3v48" [edit=sysop:move=sysop]

OCA — Wed, 28 Dec 2011 06:50:05 GMT

Protected "3v48" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:50, 28 December 2011