3v6f - Revision history

OCA at 08:35, 20 July 2022

OCA — Wed, 20 Jul 2022 08:35:01 GMT

←Older revision		Revision as of 08:35, 20 July 2022
Line 1:		Line 1:

	==Crystal Structure of an anti-HBV e-antigen monoclonal Fab fragment (e6), unbound==		==Crystal Structure of an anti-HBV e-antigen monoclonal Fab fragment (e6), unbound==
-	<StructureSection load='3v6f' size='340' side='right' caption='[[3v6f]], [[Resolution\|resolution]] 2.52Å' scene=''>	+	<StructureSection load='3v6f' size='340' side='right'caption='[[3v6f]], [[Resolution\|resolution]] 2.52Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3v6f]] is a 8 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V6F OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3V6F FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3v6f]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V6F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V6F FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3v6z\|3v6z]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3v6z\|3v6z]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3v6f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v6f OCA], [~~http~~://pdbe.org/3v6f PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3v6f RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3v6f PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3v6f ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v6f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v6f OCA], [https://pdbe.org/3v6f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v6f RCSB], [https://www.ebi.ac.uk/pdbsum/3v6f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v6f ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
	[[Category: Dimattia, M A]]		[[Category: Dimattia, M A]]

OCA at 19:07, 10 December 2016

OCA — Sat, 10 Dec 2016 19:07:07 GMT

←Older revision		Revision as of 19:07, 10 December 2016
Line 1:		Line 1:
		+
	==Crystal Structure of an anti-HBV e-antigen monoclonal Fab fragment (e6), unbound==		==Crystal Structure of an anti-HBV e-antigen monoclonal Fab fragment (e6), unbound==
	<StructureSection load='3v6f' size='340' side='right' caption='[[3v6f]], [[Resolution\|resolution]] 2.52Å' scene=''>		<StructureSection load='3v6f' size='340' side='right' caption='[[3v6f]], [[Resolution\|resolution]] 2.52Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[3v6f]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V6F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3V6F FirstGlance]. <br>		<table><tr><td colspan='2'>[[3v6f]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V6F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3V6F FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3v6z\|3v6z]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3v6z\|3v6z]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v6f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v6f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v6f RCSB], [http://www.ebi.ac.uk/pdbsum/3v6f PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v6f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v6f OCA], [http://pdbe.org/3v6f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3v6f RCSB], [http://www.ebi.ac.uk/pdbsum/3v6f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3v6f ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 14:		Line 15:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3v6f" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 17:41, 9 December 2014

OCA — Tue, 09 Dec 2014 17:41:23 GMT

←Older revision		Revision as of 17:41, 9 December 2014
Line 1:		Line 1:
-	[[~~Image:~~3v6f.~~jpg~~\|~~left~~\|~~200px~~]]	+	==Crystal Structure of an anti-HBV e-antigen monoclonal Fab fragment (e6), unbound==
		+	<StructureSection load='3v6f' size='340' side='right' caption='[[3v6f]], [[Resolution\|resolution]] 2.52Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3v6f]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V6F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3V6F FirstGlance]. <br>
		+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3v6z\|3v6z]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v6f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v6f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v6f RCSB], [http://www.ebi.ac.uk/pdbsum/3v6f PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Chronic hepatitis B virus (HBV) infection afflicts millions worldwide with cirrhosis and liver cancer. HBV e-antigen (HBeAg), a clinical marker for disease severity, is a nonparticulate variant of the protein (core antigen, HBcAg) that forms the building-blocks of capsids. HBeAg is not required for virion production, but is implicated in establishing immune tolerance and chronic infection. Here, we report the crystal structure of HBeAg, which clarifies how the short N-terminal propeptide of HBeAg induces a radically altered mode of dimerization relative to HBcAg ( approximately 140 degrees rotation), locked into place through formation of intramolecular disulfide bridges. This structural switch precludes capsid assembly and engenders a distinct antigenic repertoire, explaining why the two antigens are cross-reactive at the T cell level (through sequence identity) but not at the B cell level (through conformation). The structure offers insight into how HBeAg may establish immune tolerance for HBcAg while evading its robust immunogenicity.

-	~~{{STRUCTURE_3v6f\| PDB=3v6f \| SCENE= }}~~	+	Antigenic switching of hepatitis B virus by alternative dimerization of the capsid protein.,Dimattia MA, Watts NR, Stahl SJ, Grimes JM, Steven AC, Stuart DI, Wingfield PT Structure. 2013 Jan 8;21(1):133-42. doi: 10.1016/j.str.2012.10.017. Epub 2012 Dec, 6. PMID:23219881<ref>PMID:23219881</ref>

-	~~===Crystal Structure~~ of ~~an anti-HBV e-antigen monoclonal Fab fragment (e6), unbound===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_23219881}}~~	+	== References ==
-		+	<references/>
-	==~~About this Structure~~==	+	__TOC__
-	~~[[3v6f]] is a 8 chain structure with sequence from [http:~~//~~en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V6F OCA].~~	+	</StructureSection>
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
-	[[Category: Dimattia, M A.]]	+	[[Category: Dimattia, M A]]
-	[[Category: Grimes, J M.]]	+	[[Category: Grimes, J M]]
-	[[Category: Stahl, S J.]]	+	[[Category: Stahl, S J]]
-	[[Category: Steven, A C.]]	+	[[Category: Steven, A C]]
-	[[Category: Stuart, D I.]]	+	[[Category: Stuart, D I]]
-	[[Category: Watts, N R.]]	+	[[Category: Watts, N R]]
-	[[Category: Wingfield, P T.]]	+	[[Category: Wingfield, P T]]
	[[Category: Antibody fab fragment]]		[[Category: Antibody fab fragment]]
	[[Category: Immune system]]		[[Category: Immune system]]
	[[Category: Immunoglobulin domain]]		[[Category: Immunoglobulin domain]]

OCA at 12:54, 6 February 2013

OCA — Wed, 06 Feb 2013 12:54:17 GMT

←Older revision		Revision as of 12:54, 6 February 2013
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3v6f.jpg\|left\|200px]]

-	~~The entry~~ 3v6f ~~is ON HOLD~~	+	{{STRUCTURE_3v6f\| PDB=3v6f \| SCENE= }}

-	~~Authors: Dimattia~~, ~~M.A., Watts, N.R., Stahl, S.J., Grimes, J.M., Steven, A.C., Stuart, D.I., Wingfield, P.T.~~	+	===Crystal Structure of an anti-HBV e-antigen monoclonal Fab fragment (e6), unbound===

-	~~Description: Crystal~~ Structure ~~of an anti~~-~~HBV e-antigen monoclonal Fab fragment (e6)~~, ~~unbound~~	+	{{ABSTRACT_PUBMED_23219881}}
		+
		+	==About this Structure==
		+	[[3v6f]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V6F OCA].
		+	[[Category: Mus musculus]]
		+	[[Category: Dimattia, M A.]]
		+	[[Category: Grimes, J M.]]
		+	[[Category: Stahl, S J.]]
		+	[[Category: Steven, A C.]]
		+	[[Category: Stuart, D I.]]
		+	[[Category: Watts, N R.]]
		+	[[Category: Wingfield, P T.]]
		+	[[Category: Antibody fab fragment]]
		+	[[Category: Immune system]]
		+	[[Category: Immunoglobulin domain]]

OCA at 06:51, 1 February 2012

OCA — Wed, 01 Feb 2012 06:51:17 GMT

←Older revision		Revision as of 06:51, 1 February 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3v6f is ON HOLD ~~until sometime in the future~~	+	The entry 3v6f is ON HOLD

-	Authors: ~~DiMattia~~, M.A., Watts, N.R., Stahl, S.J., Grimes, J.M., Steven, A.C., Stuart, D.I., Wingfield, P.T.	+	Authors: Dimattia, M.A., Watts, N.R., Stahl, S.J., Grimes, J.M., Steven, A.C., Stuart, D.I., Wingfield, P.T.

	Description: Crystal Structure of an anti-HBV e-antigen monoclonal Fab fragment (e6), unbound		Description: Crystal Structure of an anti-HBV e-antigen monoclonal Fab fragment (e6), unbound

OCA at 10:18, 18 January 2012

OCA — Wed, 18 Jan 2012 10:18:00 GMT

←Older revision		Revision as of 10:18, 18 January 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3v6f is ON HOLD	+	The entry 3v6f is ON HOLD until sometime in the future

	Authors: DiMattia, M.A., Watts, N.R., Stahl, S.J., Grimes, J.M., Steven, A.C., Stuart, D.I., Wingfield, P.T.		Authors: DiMattia, M.A., Watts, N.R., Stahl, S.J., Grimes, J.M., Steven, A.C., Stuart, D.I., Wingfield, P.T.

	Description: Crystal Structure of an anti-HBV e-antigen monoclonal Fab fragment (e6), unbound		Description: Crystal Structure of an anti-HBV e-antigen monoclonal Fab fragment (e6), unbound

OCA: Protected "3v6f" [edit=sysop:move=sysop]

OCA — Wed, 28 Dec 2011 06:52:25 GMT

Protected "3v6f" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:52, 28 December 2011

OCA: New page: '''Unreleased structure''' The entry 3v6f is ON HOLD Authors: DiMattia, M.A., Watts, N.R., Stahl, S.J., Grimes, J.M., Steven, A.C., Stuart, D.I., Wingfield, P.T. Description: Crystal S...

OCA — Wed, 28 Dec 2011 06:52:24 GMT

New page: '''Unreleased structure''' The entry 3v6f is ON HOLD Authors: DiMattia, M.A., Watts, N.R., Stahl, S.J., Grimes, J.M., Steven, A.C., Stuart, D.I., Wingfield, P.T. Description: Crystal S...

New page

'''Unreleased structure'''

The entry 3v6f is ON HOLD

Authors: DiMattia, M.A., Watts, N.R., Stahl, S.J., Grimes, J.M., Steven, A.C., Stuart, D.I., Wingfield, P.T.

Description: Crystal Structure of an anti-HBV e-antigen monoclonal Fab fragment (e6), unbound