3v9z - Revision history

OCA at 12:18, 8 November 2023

OCA — Wed, 08 Nov 2023 12:18:11 GMT

←Older revision		Revision as of 12:18, 8 November 2023
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	<StructureSection load='3v9z' size='340' side='right'caption='[[3v9z]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3v9z' size='340' side='right'caption='[[3v9z]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3v9z]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Ecoli Ecoli~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V9Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V9Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3v9z]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V9Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V9Z FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>~~, ~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[3ngy\|3ngy]]~~, ~~[[3ngz\|3ngz]], [[3nh0\|3nh0]], [[3nh1\|3nh1]], [[3nh2\|3nh2]], [[3v9s\|3v9s]], [[3v9u\|3v9u]], [[3v9w\|3v9w]], [[3v9x\|3v9x]], [[3va0\|3va0]], [[3va3\|3va3]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v9z OCA], [https://pdbe.org/3v9z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v9z RCSB], [https://www.ebi.ac.uk/pdbsum/3v9z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v9z ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v9z OCA], [https://pdbe.org/3v9z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v9z RCSB], [https://www.ebi.ac.uk/pdbsum/3v9z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v9z ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/RNT_ECOLI RNT_ECOLI]] Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis, especially in strains lacking other exoribonucleases.[HAMAP-Rule:MF_00157]	+	[https://www.uniprot.org/uniprot/RNT_ECOLI RNT_ECOLI] Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis, especially in strains lacking other exoribonucleases.[HAMAP-Rule:MF_00157]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 26:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ecoli~~]]	+	[[Category: Escherichia coli K-12]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Hsiao, Y Y]]	+	[[Category: Hsiao Y-Y]]
-	[[Category: Yuan~~, H S]]~~	+	[[Category: Yuan HS]]
-	~~[[Category: Dedd nucleases family]]~~	+
-	~~[[Category: Exo-nuclease]]~~	+
-	~~[[Category: Hydrolase-dna complex~~]]	+

OCA at 18:34, 27 July 2022

OCA — Wed, 27 Jul 2022 18:34:41 GMT

←Older revision		Revision as of 18:34, 27 July 2022
Line 1:		Line 1:

	==Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site==		==Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site==
-	<StructureSection load='3v9z' size='340' side='right' caption='[[3v9z]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='3v9z' size='340' side='right'caption='[[3v9z]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3v9z]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V9Z OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3V9Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3v9z]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V9Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V9Z FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3ngy\|3ngy]], [[3ngz\|3ngz]], [[3nh0\|3nh0]], [[3nh1\|3nh1]], [[3nh2\|3nh2]], [[3v9s\|3v9s]], [[3v9u\|3v9u]], [[3v9w\|3v9w]], [[3v9x\|3v9x]], [[3va0\|3va0]], [[3va3\|3va3]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3ngy\|3ngy]], [[3ngz\|3ngz]], [[3nh0\|3nh0]], [[3nh1\|3nh1]], [[3nh2\|3nh2]], [[3v9s\|3v9s]], [[3v9u\|3v9u]], [[3v9w\|3v9w]], [[3v9x\|3v9x]], [[3va0\|3va0]], [[3va3\|3va3]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3v9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v9z OCA], [~~http~~://pdbe.org/3v9z PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3v9z RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3v9z PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3v9z ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v9z OCA], [https://pdbe.org/3v9z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v9z RCSB], [https://www.ebi.ac.uk/pdbsum/3v9z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v9z ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/RNT_ECOLI RNT_ECOLI]] Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis, especially in strains lacking other exoribonucleases.[HAMAP-Rule:MF_00157]	+	[[https://www.uniprot.org/uniprot/RNT_ECOLI RNT_ECOLI]] Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis, especially in strains lacking other exoribonucleases.[HAMAP-Rule:MF_00157]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 21:

	==See Also==		==See Also==
-	*[[Ribonuclease\|Ribonuclease]]	+	*[[Ribonuclease 3D structures\|Ribonuclease 3D structures]]
-	*[[Temp\|Temp]]	+
	== References ==		== References ==
	<references/>		<references/>
Line 28:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Ecoli]]		[[Category: Ecoli]]
		+	[[Category: Large Structures]]
	[[Category: Hsiao, Y Y]]		[[Category: Hsiao, Y Y]]
	[[Category: Yuan, H S]]		[[Category: Yuan, H S]]

OCA at 22:24, 4 August 2016

OCA — Thu, 04 Aug 2016 22:24:48 GMT

←Older revision		Revision as of 22:24, 4 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site==		==Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site==
	<StructureSection load='3v9z' size='340' side='right' caption='[[3v9z]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3v9z' size='340' side='right' caption='[[3v9z]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3v9z]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli_k-12 Escherichia coli k-12~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V9Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3V9Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3v9z]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V9Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3V9Z FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3ngy\|3ngy]], [[3ngz\|3ngz]], [[3nh0\|3nh0]], [[3nh1\|3nh1]], [[3nh2\|3nh2]], [[3v9s\|3v9s]], [[3v9u\|3v9u]], [[3v9w\|3v9w]], [[3v9x\|3v9x]], [[3va0\|3va0]], [[3va3\|3va3]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3ngy\|3ngy]], [[3ngz\|3ngz]], [[3nh0\|3nh0]], [[3nh1\|3nh1]], [[3nh2\|3nh2]], [[3v9s\|3v9s]], [[3v9u\|3v9u]], [[3v9w\|3v9w]], [[3v9x\|3v9x]], [[3va0\|3va0]], [[3va3\|3va3]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v9z OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v9z RCSB], [http://www.ebi.ac.uk/pdbsum/3v9z PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v9z OCA], [http://pdbe.org/3v9z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3v9z RCSB], [http://www.ebi.ac.uk/pdbsum/3v9z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3v9z ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3v9z" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Ribonuclease\|Ribonuclease]]		*[[Ribonuclease\|Ribonuclease]]
	*[[Temp\|Temp]]		*[[Temp\|Temp]]
-	*[[User:Jaime.Prilusky/Test/tree\|User:Jaime.Prilusky/Test/tree]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia coli k-12~~]]	+	[[Category: Ecoli]]
	[[Category: Hsiao, Y Y]]		[[Category: Hsiao, Y Y]]
	[[Category: Yuan, H S]]		[[Category: Yuan, H S]]

OCA at 20:12, 24 December 2014

OCA — Wed, 24 Dec 2014 20:12:37 GMT

←Older revision		Revision as of 20:12, 24 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v9z OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v9z RCSB], [http://www.ebi.ac.uk/pdbsum/3v9z PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v9z OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v9z RCSB], [http://www.ebi.ac.uk/pdbsum/3v9z PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RNT_ECOLI RNT_ECOLI]] Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis, especially in strains lacking other exoribonucleases.[HAMAP-Rule:MF_00157]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 07:30, 21 December 2014

OCA — Sun, 21 Dec 2014 07:30:34 GMT

←Older revision		Revision as of 07:30, 21 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3v9z\| PDB=3v9z \| SCENE= }}~~	+	==Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site==
-	===Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site===	+	<StructureSection load='3v9z' size='340' side='right' caption='[[3v9z]], [[Resolution\|resolution]] 1.80Å' scene=''>
-	~~{{ABSTRACT_PUBMED_22718982}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3v9z]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V9Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3V9Z FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3ngy\|3ngy]], [[3ngz\|3ngz]], [[3nh0\|3nh0]], [[3nh1\|3nh1]], [[3nh2\|3nh2]], [[3v9s\|3v9s]], [[3v9u\|3v9u]], [[3v9w\|3v9w]], [[3v9x\|3v9x]], [[3va0\|3va0]], [[3va3\|3va3]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v9z OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v9z RCSB], [http://www.ebi.ac.uk/pdbsum/3v9z PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Exonucleases are key enzymes in the maintenance of genome stability, processing of immature RNA precursors and degradation of unnecessary nucleic acids. However, it remains unclear how exonucleases digest nucleic acids to generate correct end products for next-step processing. Here we show how the exonuclease RNase T stops its trimming precisely. The crystal structures of RNase T in complex with a stem-loop DNA, a GG dinucleotide and single-stranded DNA with different 3'-end sequences demonstrate why a duplex with a short 3'-overhang, a dinucleotide and a ssDNA with a 3'-end C cannot be further digested by RNase T. Several hydrophobic residues in RNase T change their conformation upon substrate binding and induce an active or inactive conformation in the active site that construct a precise machine to determine which substrate should be digested based on its sequence, length and structure. These studies thus provide mechanistic insights into how RNase T prevents over digestion of its various substrates, and the results can be extrapolated to the thousands of members of the DEDDh family of exonucleases.

-	~~==Function==~~	+	How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes.,Hsiao YY, Duh Y, Chen YP, Wang YT, Yuan HS Nucleic Acids Res. 2012 Jun 19. PMID:22718982<ref>PMID:22718982</ref>
-	~~[[http~~:~~//www.uniprot.org/uniprot/RNT_ECOLI RNT_ECOLI]] Responsible for the end-turnover~~ of ~~tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C~~-A). ~~Also appears to be involved in tRNA biosynthesis~~, ~~especially in strains lacking other exoribonucleases~~.~~[HAMAP-Rule~~:~~MF_00157]~~	+

-	~~==About this Structure==~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[3v9z]] is~~ a ~~4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3V9Z OCA].~~	+	</div>

-	==~~Reference~~==	+	==See Also==
-	~~<ref group="xtra">PMID~~:~~022718982<~~/~~ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	*[[Ribonuclease\|Ribonuclease]]
		+	*[[Temp\|Temp]]
		+	*[[User:Jaime.Prilusky/Test/tree\|User:Jaime.Prilusky/Test/tree]]
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli k-12]]		[[Category: Escherichia coli k-12]]
-	[[Category: Hsiao, Y Y.]]	+	[[Category: Hsiao, Y Y]]
-	[[Category: Yuan, H S.]]	+	[[Category: Yuan, H S]]
	[[Category: Dedd nucleases family]]		[[Category: Dedd nucleases family]]
	[[Category: Exo-nuclease]]		[[Category: Exo-nuclease]]
	[[Category: Hydrolase-dna complex]]		[[Category: Hydrolase-dna complex]]

OCA at 07:54, 30 June 2013

OCA — Sun, 30 Jun 2013 07:54:59 GMT

←Older revision		Revision as of 07:54, 30 June 2013
Line 1:		Line 1:
-	[[Image:3v9z.jpg\|left\|200px]]
-
	{{STRUCTURE_3v9z\| PDB=3v9z \| SCENE= }}		{{STRUCTURE_3v9z\| PDB=3v9z \| SCENE= }}
-
	===Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site===		===Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site===
		+	{{ABSTRACT_PUBMED_22718982}}

-	~~{{ABSTRACT_PUBMED_22718982}}~~	+	==Function==
		+	[[http://www.uniprot.org/uniprot/RNT_ECOLI RNT_ECOLI]] Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis, especially in strains lacking other exoribonucleases.[HAMAP-Rule:MF_00157]

	==About this Structure==		==About this Structure==
-	[[3v9z]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli~~ Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V9Z OCA].	+	[[3v9z]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V9Z OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:022718982</ref><references group="xtra"/>	+	<ref group="xtra">PMID:022718982</ref><references group="xtra"/><references/>
-	[[Category: Escherichia coli]]	+	[[Category: Escherichia coli k-12]]
	[[Category: Hsiao, Y Y.]]		[[Category: Hsiao, Y Y.]]
	[[Category: Yuan, H S.]]		[[Category: Yuan, H S.]]

OCA at 08:12, 11 July 2012

OCA — Wed, 11 Jul 2012 08:12:10 GMT

←Older revision		Revision as of 08:12, 11 July 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3v9z.jpg\|left\|200px]]

-	~~The entry~~ 3v9z ~~is ON HOLD~~ ~~until Paper Publication~~	+	{{STRUCTURE_3v9z\| PDB=3v9z \| SCENE= }}

-	~~Authors: Hsiao, Y.-Y., Yuan, H.S.~~	+	===Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site===

-	~~Description: Crystal~~ structure ~~of RNase T in complex~~ with ~~a product ssDNA (ACC) with one Mg in the active site~~	+	{{ABSTRACT_PUBMED_22718982}}
		+
		+	==About this Structure==
		+	[[3v9z]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V9Z OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:022718982</ref><references group="xtra"/>
		+	[[Category: Escherichia coli]]
		+	[[Category: Hsiao, Y Y.]]
		+	[[Category: Yuan, H S.]]
		+	[[Category: Dedd nucleases family]]
		+	[[Category: Exo-nuclease]]
		+	[[Category: Hydrolase-dna complex]]

OCA at 06:03, 25 January 2012

OCA — Wed, 25 Jan 2012 06:03:04 GMT

←Older revision		Revision as of 06:03, 25 January 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3v9z is ON HOLD	+	The entry 3v9z is ON HOLD until Paper Publication

	Authors: Hsiao, Y.-Y., Yuan, H.S.		Authors: Hsiao, Y.-Y., Yuan, H.S.

-	Description: Crystal structure of RNase T in complex with a ~~non-preferred~~ ssDNA (ACC) with one Mg in the active site	+	Description: Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site

OCA: Protected "3v9z" [edit=sysop:move=sysop]

OCA — Wed, 04 Jan 2012 05:47:43 GMT

Protected "3v9z" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:47, 4 January 2012

OCA: New page: '''Unreleased structure''' The entry 3v9z is ON HOLD Authors: Hsiao, Y.-Y., Yuan, H.S. Description: Crystal structure of RNase T in complex with a non-preferred ssDNA (ACC) with one Mg...

OCA — Wed, 04 Jan 2012 05:47:42 GMT

New page: '''Unreleased structure''' The entry 3v9z is ON HOLD Authors: Hsiao, Y.-Y., Yuan, H.S. Description: Crystal structure of RNase T in complex with a non-preferred ssDNA (ACC) with one Mg...

New page

'''Unreleased structure'''

The entry 3v9z is ON HOLD

Authors: Hsiao, Y.-Y., Yuan, H.S.

Description: Crystal structure of RNase T in complex with a non-preferred ssDNA (ACC) with one Mg in the active site