3vk1 - Revision history

OCA at 12:23, 8 November 2023

OCA — Wed, 08 Nov 2023 12:23:53 GMT

←Older revision		Revision as of 12:23, 8 November 2023
Line 3:		Line 3:
	<StructureSection load='3vk1' size='340' side='right'caption='[[3vk1]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='3vk1' size='340' side='right'caption='[[3vk1]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3vk1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Monef Monef~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VK1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3vk1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Montipora_efflorescens Montipora efflorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VK1 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>~~, ~~<scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=QFG:{(4E)-2-[(1E)-4-AMINO-4-OXOBUTANIMIDOYL]-4-BENZYLIDENE-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>QFG</scene>~~</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=QFG:{(4E)-2-[(1E)-4-AMINO-4-OXOBUTANIMIDOYL]-4-BENZYLIDENE-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>QFG</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3vic\|3vic]], [[1mou\|1mou]], [[1mov\|1mov]], [[2arl\|2arl]], [[2p4m\|2p4m]]</div></td></tr>	+
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rtms5 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=105610 MONEF])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vk1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vk1 OCA], [https://pdbe.org/3vk1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vk1 RCSB], [https://www.ebi.ac.uk/pdbsum/3vk1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vk1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vk1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vk1 OCA], [https://pdbe.org/3vk1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vk1 RCSB], [https://www.ebi.ac.uk/pdbsum/3vk1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vk1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/NFCP_MONEF NFCP_MONEF]] Thought to play a role in photoprotection of the coral's resident symbiont microalgae's photosystems from photoinhibition caused by high light levels found near the surface of coral reefs.<ref>PMID:12595737</ref>	+	[https://www.uniprot.org/uniprot/NFCP_MONEF NFCP_MONEF] Thought to play a role in photoprotection of the coral's resident symbiont microalgae's photosystems from photoinhibition caused by high light levels found near the surface of coral reefs.<ref>PMID:12595737</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 26:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Monef~~]]	+	[[Category: Montipora efflorescens]]
-	[[Category: Battad~~, J M~~]]	+	[[Category: Battad JM]]
-	[[Category: Byres, M]]	+	[[Category: Byres M]]
-	[[Category: Devenish~~, R J~~]]	+	[[Category: Devenish RJ]]
-	[[Category: Prescott, M]]	+	[[Category: Prescott M]]
-	[[Category: Rossjohn, J]]	+	[[Category: Rossjohn J]]
-	[[Category: Traore~~, D A.K~~]]	+	[[Category: Traore DAK]]
-	[[Category: Wilce, M]]	+	[[Category: Wilce M]]
-	~~[[Category: Acylimine]]~~	+
-	~~[[Category: Anthozoa]]~~	+
-	~~[[Category: Beta barrel]]~~	+
-	~~[[Category: Beta can]]~~	+
-	~~[[Category: Chromophore]]~~	+
-	~~[[Category: Chromoprotein]]~~	+
-	~~[[Category: Fluorescent protein]]~~	+
-	~~[[Category: Fluorophore]]~~	+
-	~~[[Category: Gfp]]~~	+
-	~~[[Category: Luminescent protein]]~~	+
-	~~[[Category: Pigment]]~~	+
-	~~[[Category: Pigment protein]]~~	+
-	~~[[Category: Pocilloporin~~]]	+

OCA at 18:49, 27 July 2022

OCA — Wed, 27 Jul 2022 18:49:32 GMT

←Older revision		Revision as of 18:49, 27 July 2022
Line 1:		Line 1:

	==Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5==		==Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5==
-	<StructureSection load='3vk1' size='340' side='right' caption='[[3vk1]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='3vk1' size='340' side='right'caption='[[3vk1]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3vk1]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Coral Coral~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3VK1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3vk1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Monef Monef]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VK1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=QFG:{(4E)-2-[(1E)-4-AMINO-4-OXOBUTANIMIDOYL]-4-BENZYLIDENE-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>QFG</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=QFG:{(4E)-2-[(1E)-4-AMINO-4-OXOBUTANIMIDOYL]-4-BENZYLIDENE-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>QFG</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vic\|3vic]], [[1mou\|1mou]], [[1mov\|1mov]], [[2arl\|2arl]], [[2p4m\|2p4m]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3vic\|3vic]], [[1mou\|1mou]], [[1mov\|1mov]], [[2arl\|2arl]], [[2p4m\|2p4m]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rtms5 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=105610 ~~Coral~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rtms5 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=105610 MONEF])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3vk1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vk1 OCA], [~~http~~://pdbe.org/3vk1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3vk1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3vk1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3vk1 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vk1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vk1 OCA], [https://pdbe.org/3vk1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vk1 RCSB], [https://www.ebi.ac.uk/pdbsum/3vk1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vk1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/NFCP_MONEF NFCP_MONEF]] Thought to play a role in photoprotection of the coral's resident symbiont microalgae's photosystems from photoinhibition caused by high light levels found near the surface of coral reefs.<ref>PMID:12595737</ref>	+	[[https://www.uniprot.org/uniprot/NFCP_MONEF NFCP_MONEF]] Thought to play a role in photoprotection of the coral's resident symbiont microalgae's photosystems from photoinhibition caused by high light levels found near the surface of coral reefs.<ref>PMID:12595737</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 25:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Coral~~]]	+	[[Category: Large Structures]]
		+	[[Category: Monef]]
	[[Category: Battad, J M]]		[[Category: Battad, J M]]
	[[Category: Byres, M]]		[[Category: Byres, M]]

OCA at 11:05, 2 November 2016

OCA — Wed, 02 Nov 2016 11:05:09 GMT

←Older revision		Revision as of 11:05, 2 November 2016
Line 31:		Line 31:
	[[Category: Prescott, M]]		[[Category: Prescott, M]]
	[[Category: Rossjohn, J]]		[[Category: Rossjohn, J]]
-	[[Category: Traore, D]]	+	[[Category: Traore, D A.K]]
	[[Category: Wilce, M]]		[[Category: Wilce, M]]
	[[Category: Acylimine]]		[[Category: Acylimine]]

OCA at 09:22, 5 August 2016

OCA — Fri, 05 Aug 2016 09:22:09 GMT

←Older revision		Revision as of 09:22, 5 August 2016
Line 1:		Line 1:
		+
	==Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5==		==Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5==
	<StructureSection load='3vk1' size='340' side='right' caption='[[3vk1]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='3vk1' size='340' side='right' caption='[[3vk1]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3vk1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Montipora_efflorescens Montipora efflorescens~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VK1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3vk1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Coral Coral]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VK1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=QFG:{(4E)-2-[(1E)-4-AMINO-4-OXOBUTANIMIDOYL]-4-BENZYLIDENE-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>QFG</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=QFG:{(4E)-2-[(1E)-4-AMINO-4-OXOBUTANIMIDOYL]-4-BENZYLIDENE-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>QFG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vic\|3vic]], [[1mou\|1mou]], [[1mov\|1mov]], [[2arl\|2arl]], [[2p4m\|2p4m]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vic\|3vic]], [[1mou\|1mou]], [[1mov\|1mov]], [[2arl\|2arl]], [[2p4m\|2p4m]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rtms5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=105610 ~~Montipora efflorescens~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rtms5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=105610 Coral])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vk1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vk1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vk1 RCSB], [http://www.ebi.ac.uk/pdbsum/3vk1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vk1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vk1 OCA], [http://pdbe.org/3vk1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3vk1 RCSB], [http://www.ebi.ac.uk/pdbsum/3vk1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3vk1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 20:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3vk1" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Montipora efflorescens~~]]	+	[[Category: Coral]]
	[[Category: Battad, J M]]		[[Category: Battad, J M]]
	[[Category: Byres, M]]		[[Category: Byres, M]]

OCA at 01:08, 25 December 2014

OCA — Thu, 25 Dec 2014 01:08:42 GMT

←Older revision		Revision as of 01:08, 25 December 2014
Line 9:		Line 9:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vk1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vk1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vk1 RCSB], [http://www.ebi.ac.uk/pdbsum/3vk1 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vk1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vk1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vk1 RCSB], [http://www.ebi.ac.uk/pdbsum/3vk1 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NFCP_MONEF NFCP_MONEF]] Thought to play a role in photoprotection of the coral's resident symbiont microalgae's photosystems from photoinhibition caused by high light levels found near the surface of coral reefs.<ref>PMID:12595737</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 16:33, 9 December 2014

OCA — Tue, 09 Dec 2014 16:33:06 GMT

←Older revision		Revision as of 16:33, 9 December 2014
Line 1:		Line 1:
-	[[~~Image:~~3vk1.~~png~~\|~~left~~\|~~200px~~]]	+	==Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5==
		+	<StructureSection load='3vk1' size='340' side='right' caption='[[3vk1]], [[Resolution\|resolution]] 2.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3vk1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Montipora_efflorescens Montipora efflorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VK1 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=QFG:{(4E)-2-[(1E)-4-AMINO-4-OXOBUTANIMIDOYL]-4-BENZYLIDENE-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>QFG</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3vic\|3vic]], [[1mou\|1mou]], [[1mov\|1mov]], [[2arl\|2arl]], [[2p4m\|2p4m]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rtms5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=105610 Montipora efflorescens])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vk1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vk1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vk1 RCSB], [http://www.ebi.ac.uk/pdbsum/3vk1 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Rtms5 is an deep blue weakly fluorescent GFP-like protein ([Formula: see text], 592 nm; [Formula: see text], 630nm; Phi(F), 0.004) that contains a (66)Gln-Tyr-Gly chromophore tripeptide sequence. We investigated the optical properties and structure of two variants, Rtms5(Y67F) and Rtms5(Y67F/H146S) in which the tyrosine at position 67 was substituted by a phenylalanine. Compared to the parent proteins the optical spectra for these new variants were significantly blue-shifted. Rtms5(Y67F) spectra were characterised by two absorbing species ([Formula: see text], 440 nm and 513 nm) and green fluorescence emission ([Formula: see text], 440 nm; [Formula: see text], 508 nm; Phi(F), 0.11), whilst Rtms5(Y67F/H146S) spectra were characterised by a single absorbing species ([Formula: see text], 440 nm) and a relatively high fluorescence quantum yield (Phi(F,) 0.75; [Formula: see text], 440 nm; [Formula: see text], 508 nm). The fluorescence emissions of each variant were remarkably stable over a wide range of pH (3-11). These are the first GFP-like proteins with green emissions (500-520 nm) that do not have a tyrosine at position 67. The X-ray crystal structure of each protein was determined to 2.2 A resolution and showed that the benzylidine ring of the chromophore, similar to the 4-hydroxybenzylidine ring of the Rtms5 parent, is non-coplanar and in the trans conformation. The results of chemical quantum calculations together with the structural data suggested that the 513 nm absorbing species in Rtms5(Y67F) results from an unusual form of the chromophore protonated at the acylimine oxygen. These are the first X-ray crystal structures for fluorescent proteins with a functional chromophore containing a phenylalanine at position 67.

-	~~{{STRUCTURE_3vk1\| PDB=3vk1 \| SCENE= }}~~	+	A Green Fluorescent Protein Containing a QFG Tri-Peptide Chromophore: Optical Properties and X-Ray Crystal Structure.,Battad JM, Traore DA, Byres E, Rossjohn J, Devenish RJ, Olsen S, Wilce MC, Prescott M PLoS One. 2012;7(10):e47331. doi: 10.1371/journal.pone.0047331. Epub 2012 Oct 10. PMID:23071789<ref>PMID:23071789</ref>

-	~~===Green-fluorescent variant~~ of the ~~non-fluorescent chromoprotein Rtms5===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_23071789}}~~	+	== References ==
-		+	<references/>
-	==~~About this Structure~~==	+	__TOC__
-	~~[[3vk1]] is a 1 chain structure with sequence from [http:~~//~~en.wikipedia.org/wiki/Montipora_efflorescens Montipora efflorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK1 OCA].~~	+	</StructureSection>
	[[Category: Montipora efflorescens]]		[[Category: Montipora efflorescens]]
-	[[Category: Battad, J M.]]	+	[[Category: Battad, J M]]
-	[[Category: Byres, M.]]	+	[[Category: Byres, M]]
-	[[Category: Devenish, R J.]]	+	[[Category: Devenish, R J]]
-	[[Category: Prescott, M.]]	+	[[Category: Prescott, M]]
-	[[Category: Rossjohn, J.]]	+	[[Category: Rossjohn, J]]
-	[[Category: Traore, D.]]	+	[[Category: Traore, D]]
-	[[Category: Wilce, M.]]	+	[[Category: Wilce, M]]
	[[Category: Acylimine]]		[[Category: Acylimine]]
	[[Category: Anthozoa]]		[[Category: Anthozoa]]

OCA at 09:03, 31 October 2012

OCA — Wed, 31 Oct 2012 09:03:43 GMT

←Older revision		Revision as of 09:03, 31 October 2012
Line 1:		Line 1:
-	[[Image:3vk1.~~jpg~~\|left\|200px]]	+	[[Image:3vk1.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3vk1", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3vk1\| PDB=3vk1 \| SCENE= }}		{{STRUCTURE_3vk1\| PDB=3vk1 \| SCENE= }}

	===Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5===		===Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5===

		+	{{ABSTRACT_PUBMED_23071789}}

	==About this Structure==		==About this Structure==

OCA at 07:52, 6 June 2012

OCA — Wed, 06 Jun 2012 07:52:34 GMT

←Older revision		Revision as of 07:52, 6 June 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3vk1.jpg\|left\|200px]]

-	The ~~entry 3vk1~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3vk1", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3vk1\| PDB=3vk1 \| SCENE= }}

-	~~Authors: Battad, J.M., Traore, D., Wilce, M., Byres, M., Rossjohn, J., Devenish, R.J., Prescott, M.~~	+	===Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5===

-	~~Description~~: ~~Green~~-~~fluorescent variant of the non-fluorescent chromoprotein Rtms5~~	+
		+	==About this Structure==
		+	[[3vk1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Montipora_efflorescens Montipora efflorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK1 OCA].
		+	[[Category: Montipora efflorescens]]
		+	[[Category: Battad, J M.]]
		+	[[Category: Byres, M.]]
		+	[[Category: Devenish, R J.]]
		+	[[Category: Prescott, M.]]
		+	[[Category: Rossjohn, J.]]
		+	[[Category: Traore, D.]]
		+	[[Category: Wilce, M.]]
		+	[[Category: Acylimine]]
		+	[[Category: Anthozoa]]
		+	[[Category: Beta barrel]]
		+	[[Category: Beta can]]
		+	[[Category: Chromophore]]
		+	[[Category: Chromoprotein]]
		+	[[Category: Fluorescent protein]]
		+	[[Category: Fluorophore]]
		+	[[Category: Gfp]]
		+	[[Category: Luminescent protein]]
		+	[[Category: Pigment]]
		+	[[Category: Pigment protein]]
		+	[[Category: Pocilloporin]]

OCA at 11:18, 14 December 2011

OCA — Wed, 14 Dec 2011 11:18:47 GMT

←Older revision		Revision as of 11:18, 14 December 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3vk1 is ON HOLD	+	The entry 3vk1 is ON HOLD until Paper Publication

	Authors: Battad, J.M., Traore, D., Wilce, M., Byres, M., Rossjohn, J., Devenish, R.J., Prescott, M.		Authors: Battad, J.M., Traore, D., Wilce, M., Byres, M., Rossjohn, J., Devenish, R.J., Prescott, M.

	Description: Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5		Description: Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5

OCA at 05:58, 30 November 2011

OCA — Wed, 30 Nov 2011 05:58:27 GMT

←Older revision		Revision as of 05:58, 30 November 2011
Line 3:		Line 3:
	The entry 3vk1 is ON HOLD		The entry 3vk1 is ON HOLD

-	Authors: Battad, J.M, Traore, D., Wilce, M., Byres, M., Rossjohn, J., Devenish, R.J., Prescott, M.	+	Authors: Battad, J.M., Traore, D., Wilce, M., Byres, M., Rossjohn, J., Devenish, R.J., Prescott, M.

	Description: Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5		Description: Green-fluorescent variant of the non-fluorescent chromoprotein Rtms5