3vk7 - Revision history

OCA at 12:24, 8 November 2023

OCA — Wed, 08 Nov 2023 12:24:12 GMT

←Older revision		Revision as of 12:24, 8 November 2023
Line 3:		Line 3:
	<StructureSection load='3vk7' size='340' side='right'caption='[[3vk7]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3vk7' size='340' side='right'caption='[[3vk7]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3vk7]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Apmv Apmv~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VK7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3vk7]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Acanthamoeba_polyphaga_mimivirus Acanthamoeba polyphaga mimivirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VK7 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=OHU:2-DEOXY-5-HYDROXYURIDINE+5-(DIHYDROGEN+PHOSPHATE)'>OHU</scene>~~</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=OHU:2-DEOXY-5-HYDROXYURIDINE+5-(DIHYDROGEN+PHOSPHATE)'>OHU</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3a46\|3a46]], [[3vk8\|3vk8]]</div></td></tr>~~	+
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MIMI_L315 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=212035 APMV])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vk7 OCA], [https://pdbe.org/3vk7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vk7 RCSB], [https://www.ebi.ac.uk/pdbsum/3vk7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vk7 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vk7 OCA], [https://pdbe.org/3vk7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vk7 RCSB], [https://www.ebi.ac.uk/pdbsum/3vk7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vk7 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/FPG_MIMIV FPG_MIMIV]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 26:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Apmv~~]]	+	[[Category: Acanthamoeba polyphaga mimivirus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Averill, A]]	+	[[Category: Averill A]]
-	[[Category: Doublie, S]]	+	[[Category: Doublie S]]
-	[[Category: Imamura, K]]	+	[[Category: Imamura K]]
-	[[Category: Wallace~~, S S]]~~	+	[[Category: Wallace SS]]
-	~~[[Category: 5-hydroxyuracil]]~~	+
-	~~[[Category: Dna binding]]~~	+
-	~~[[Category: Dna glycosylase]]~~	+
-	~~[[Category: Dna lesion]]~~	+
-	~~[[Category: Hneil1 ortholog]]~~	+
-	~~[[Category: Hydrolase-dna complex]]~~	+
-	~~[[Category: Zincless finger~~]]	+

OCA at 18:49, 27 July 2022

OCA — Wed, 27 Jul 2022 18:49:48 GMT

←Older revision		Revision as of 18:49, 27 July 2022
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	==Crystal structure of DNA-glycosylase bound to DNA containing 5-Hydroxyuracil==		==Crystal structure of DNA-glycosylase bound to DNA containing 5-Hydroxyuracil==
-	<StructureSection load='3vk7' size='340' side='right' caption='[[3vk7]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='3vk7' size='340' side='right'caption='[[3vk7]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3vk7]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Apmv Apmv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK7 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3VK7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3vk7]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Apmv Apmv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VK7 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=OHU:2-DEOXY-5-HYDROXYURIDINE+5-(DIHYDROGEN+PHOSPHATE)'>OHU</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=OHU:2-DEOXY-5-HYDROXYURIDINE+5-(DIHYDROGEN+PHOSPHATE)'>OHU</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a46\|3a46]], [[3vk8\|3vk8]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3a46\|3a46]], [[3vk8\|3vk8]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MIMI_L315 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=212035 APMV])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MIMI_L315 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=212035 APMV])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3vk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vk7 OCA], [~~http~~://pdbe.org/3vk7 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3vk7 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3vk7 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3vk7 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vk7 OCA], [https://pdbe.org/3vk7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vk7 RCSB], [https://www.ebi.ac.uk/pdbsum/3vk7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vk7 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 21:		Line 21:

	==See Also==		==See Also==
-	*[[DNA glycosylase\|DNA glycosylase]]	+	*[[DNA glycosylase 3D structures\|DNA glycosylase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 27:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Apmv]]		[[Category: Apmv]]
		+	[[Category: Large Structures]]
	[[Category: Averill, A]]		[[Category: Averill, A]]
	[[Category: Doublie, S]]		[[Category: Doublie, S]]

OCA at 19:11, 10 December 2016

OCA — Sat, 10 Dec 2016 19:11:48 GMT

←Older revision		Revision as of 19:11, 10 December 2016
Line 1:		Line 1:
		+
	==Crystal structure of DNA-glycosylase bound to DNA containing 5-Hydroxyuracil==		==Crystal structure of DNA-glycosylase bound to DNA containing 5-Hydroxyuracil==
	<StructureSection load='3vk7' size='340' side='right' caption='[[3vk7]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3vk7' size='340' side='right' caption='[[3vk7]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3vk7]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Acanthamoeba_polyphaga_mimivirus Acanthamoeba polyphaga mimivirus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VK7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3vk7]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Apmv Apmv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VK7 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=OHU:2-DEOXY-5-HYDROXYURIDINE+5-(DIHYDROGEN+PHOSPHATE)'>OHU</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=OHU:2-DEOXY-5-HYDROXYURIDINE+5-(DIHYDROGEN+PHOSPHATE)'>OHU</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a46\|3a46]], [[3vk8\|3vk8]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a46\|3a46]], [[3vk8\|3vk8]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MIMI_L315 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=212035 ~~Acanthamoeba polyphaga mimivirus~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MIMI_L315 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=212035 APMV])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vk7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vk7 RCSB], [http://www.ebi.ac.uk/pdbsum/3vk7 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vk7 OCA], [http://pdbe.org/3vk7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3vk7 RCSB], [http://www.ebi.ac.uk/pdbsum/3vk7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3vk7 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 17:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3vk7" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 24:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Acanthamoeba polyphaga mimivirus~~]]	+	[[Category: Apmv]]
	[[Category: Averill, A]]		[[Category: Averill, A]]
	[[Category: Doublie, S]]		[[Category: Doublie, S]]

OCA at 17:52, 9 December 2014

OCA — Tue, 09 Dec 2014 17:52:18 GMT

←Older revision		Revision as of 17:52, 9 December 2014
Line 1:		Line 1:
-	[[~~Image:~~3vk7.~~png~~\|~~left~~\|~~200px~~]]	+	==Crystal structure of DNA-glycosylase bound to DNA containing 5-Hydroxyuracil==
		+	<StructureSection load='3vk7' size='340' side='right' caption='[[3vk7]], [[Resolution\|resolution]] 2.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3vk7]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Acanthamoeba_polyphaga_mimivirus Acanthamoeba polyphaga mimivirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VK7 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=OHU:2-DEOXY-5-HYDROXYURIDINE+5-(DIHYDROGEN+PHOSPHATE)'>OHU</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a46\|3a46]], [[3vk8\|3vk8]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MIMI_L315 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=212035 Acanthamoeba polyphaga mimivirus])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vk7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vk7 RCSB], [http://www.ebi.ac.uk/pdbsum/3vk7 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Thymine glycol (Tg) and 5-hydroxyuracil (5-OHU) are common oxidized products of pyrimidines, which are recognized and cleaved by two DNA glycosylases of the base excision repair pathway, endonuclease III (Nth) and endonuclease VIII (Nei). Although there are several structures of Nei enzymes unliganded or bound to an abasic (apurinic or apyrimidinic) site, until now there was no structure of an Nei bound to a DNA lesion. Mimivirus Nei1 (MvNei1) is an ortholog of human NEIL1, which was previously crystallized bound to DNA containing an apurinic site (Imamura, K., Wallace, S. S., and Doublie, S. (2009) J. Biol. Chem. 284, 26174-26183). Here, we present two crystal structures of MvNei1 bound to two oxidized pyrimidines, Tg and 5-OHU. Both lesions are flipped out from the DNA helix. Tg is in the anti conformation, whereas 5-OHU adopts both anti and syn conformations in the glycosylase active site. Only two protein side chains (Glu-6 and Tyr-253) are within hydrogen-bonding contact with either damaged base, and mutating these residues did not markedly affect the glycosylase activity. This finding suggests that lesion recognition by Nei occurs before the damaged base flips into the glycosylase active site.

-	~~{{STRUCTURE_3vk7\| PDB=3vk7 \| SCENE= }}~~	+	Structural characterization of viral ortholog of human DNA glycosylase NEIL1 bound to thymine glycol or 5-hydroxyuracil-containing DNA.,Imamura K, Averill A, Wallace SS, Doublie S J Biol Chem. 2012 Feb 3;287(6):4288-98. Epub 2011 Dec 14. PMID:22170059<ref>PMID:22170059</ref>

-	~~===Crystal structure~~ of ~~DNA-glycosylase bound to DNA containing 5-Hydroxyuracil===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-	~~{{ABSTRACT_PUBMED_22170059}}~~	+	==See Also==
-		+	*[[DNA glycosylase\|DNA glycosylase]]
-	==~~About this Structure~~==	+	== References ==
-	[[~~3vk7~~]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Acanthamoeba_polyphaga_mimivirus Acanthamoeba polyphaga mimivirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK7 OCA].	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:019625256<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Acanthamoeba polyphaga mimivirus]]		[[Category: Acanthamoeba polyphaga mimivirus]]
-	[[Category: Averill, A.]]	+	[[Category: Averill, A]]
-	[[Category: Doublie, S.]]	+	[[Category: Doublie, S]]
-	[[Category: Imamura, K.]]	+	[[Category: Imamura, K]]
-	[[Category: Wallace, S S.]]	+	[[Category: Wallace, S S]]
	[[Category: 5-hydroxyuracil]]		[[Category: 5-hydroxyuracil]]
	[[Category: Dna binding]]		[[Category: Dna binding]]

OCA at 08:59, 16 January 2013

OCA — Wed, 16 Jan 2013 08:59:24 GMT

←Older revision		Revision as of 08:59, 16 January 2013
Line 1:		Line 1:
-	[[Image:3vk7.~~jpg~~\|left\|200px]]	+	[[Image:3vk7.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3vk7", creates the "Structure Box" on the page.
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-	-->
	{{STRUCTURE_3vk7\| PDB=3vk7 \| SCENE= }}		{{STRUCTURE_3vk7\| PDB=3vk7 \| SCENE= }}

	===Crystal structure of DNA-glycosylase bound to DNA containing 5-Hydroxyuracil===		===Crystal structure of DNA-glycosylase bound to DNA containing 5-Hydroxyuracil===

-		+	{{ABSTRACT_PUBMED_22170059}}
-	~~<!--~~	+
-	~~The line below this paragraph,~~ {{~~ABSTRACT_PUBMED_19625256}}, adds the Publication Abstract to the page~~	+
-	~~(as it appears on PubMed at http://www.pubmed.gov), where 19625256 is the PubMed ID number.~~	+
-	~~-->~~	+
-	~~{{ABSTRACT_PUBMED_19625256~~}}	+

	==About this Structure==		==About this Structure==

OCA at 12:00, 14 December 2011

OCA — Wed, 14 Dec 2011 12:00:20 GMT

←Older revision		Revision as of 12:00, 14 December 2011
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3vk7.jpg\|left\|200px]]

-	The ~~entry 3vk7~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3vk7", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3vk7\| PDB=3vk7 \| SCENE= }}

-	~~Authors: Imamura, K., Averill, A., Wallace, S.S., Doublie, S.~~	+	===Crystal structure of DNA-glycosylase bound to DNA containing 5-Hydroxyuracil===

-	~~Description~~: ~~Crystal~~ structure ~~of DNA~~-~~glycosylase bound to DNA containing~~ 5-~~Hydroxyuracil~~	+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_19625256}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 19625256 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_19625256}}
		+
		+	==About this Structure==
		+	[[3vk7]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Acanthamoeba_polyphaga_mimivirus Acanthamoeba polyphaga mimivirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VK7 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:019625256</ref><references group="xtra"/>
		+	[[Category: Acanthamoeba polyphaga mimivirus]]
		+	[[Category: Averill, A.]]
		+	[[Category: Doublie, S.]]
		+	[[Category: Imamura, K.]]
		+	[[Category: Wallace, S S.]]
		+	[[Category: 5-hydroxyuracil]]
		+	[[Category: Dna binding]]
		+	[[Category: Dna glycosylase]]
		+	[[Category: Dna lesion]]
		+	[[Category: Hneil1 ortholog]]
		+	[[Category: Hydrolase-dna complex]]
		+	[[Category: Zincless finger]]

OCA at 07:41, 7 December 2011

OCA — Wed, 07 Dec 2011 07:41:57 GMT

←Older revision		Revision as of 07:41, 7 December 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3vk7 is ON HOLD	+	The entry 3vk7 is ON HOLD until Paper Publication

	Authors: Imamura, K., Averill, A., Wallace, S.S., Doublie, S.		Authors: Imamura, K., Averill, A., Wallace, S.S., Doublie, S.

	Description: Crystal structure of DNA-glycosylase bound to DNA containing 5-Hydroxyuracil		Description: Crystal structure of DNA-glycosylase bound to DNA containing 5-Hydroxyuracil

OCA: Protected "3vk7" [edit=sysop:move=sysop]

OCA — Wed, 16 Nov 2011 11:58:38 GMT

Protected "3vk7" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:58, 16 November 2011

OCA: New page: '''Unreleased structure''' The entry 3vk7 is ON HOLD Authors: Imamura, K., Averill, A., Wallace, S.S., Doublie, S. Description: Crystal structure of DNA-glycosylase bound to DNA contai...

OCA — Wed, 16 Nov 2011 11:58:37 GMT

New page: '''Unreleased structure''' The entry 3vk7 is ON HOLD Authors: Imamura, K., Averill, A., Wallace, S.S., Doublie, S. Description: Crystal structure of DNA-glycosylase bound to DNA contai...

New page

'''Unreleased structure'''

The entry 3vk7 is ON HOLD

Authors: Imamura, K., Averill, A., Wallace, S.S., Doublie, S.

Description: Crystal structure of DNA-glycosylase bound to DNA containing 5-Hydroxyuracil