3vu2 - Revision history

OCA at 08:42, 20 March 2024

OCA — Wed, 20 Mar 2024 08:42:01 GMT

←Older revision		Revision as of 08:42, 20 March 2024
Line 3:		Line 3:
	<StructureSection load='3vu2' size='340' side='right'caption='[[3vu2]], [[Resolution\|resolution]] 2.23Å' scene=''>		<StructureSection load='3vu2' size='340' side='right'caption='[[3vu2]], [[Resolution\|resolution]] 2.23Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3vu2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Japanese_rice Japanese rice~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VU2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VU2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3vu2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VU2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VU2 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=BGC:BETA~~-~~D-GLUCOSE'>BGC</scene>~~, ~~<scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.23Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[3amk\|3amk]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PRD_900030:alpha-maltopentaose'>PRD_900030</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b></td><td class="sblockDat">SBE1, RBE1, Os06g0726400, LOC_Os06g51084, P0017G10.8~~-~~1, P0017G10.8~~-~~2, P0548E04.28-1, P0548E04.28-2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39947 Japanese rice])</td~~></tr>	+
-	<~~tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks'>[https~~:~~//en.wikipedia.org/wiki/1,4-~~alpha-~~glucan_branching_enzyme 1,4-alpha-glucan branching enzyme], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.18 2.4.1.18]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vu2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vu2 OCA], [https://pdbe.org/3vu2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vu2 RCSB], [https://www.ebi.ac.uk/pdbsum/3vu2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vu2 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vu2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vu2 OCA], [https://pdbe.org/3vu2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vu2 RCSB], [https://www.ebi.ac.uk/pdbsum/3vu2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vu2 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/GLGB_ORYSJ GLGB_ORYSJ]] Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.	+	[https://www.uniprot.org/uniprot/GLGB_ORYSJ GLGB_ORYSJ] Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	Starch branching enzyme (SBE) catalyzes the cleavage of alpha-1,4-linkages and the subsequent transfer of alpha-1,4 glucan to form an alpha-1,6 branch point in amylopectin. We determined the crystal structure of the rice branching enzyme I (BEI) in complex with maltopentaose at a resolution of 2.2A. Maltopentaose bound to a hydrophobic pocket formed by the N-terminal helix, carbohydrate-binding module 48 (CBM48), and alpha-amylase domain. In addition, glucose moieties could be observed at molecular surfaces on the N-terminal helix (alpha2) and CBM48. Amino acid residues involved in the carbohydrate bindings are highly conserved in other SBEs, suggesting their generally conserved role in substrate binding for SBEs.	+
-		+
-	Crystal structure of the rice branching enzyme I (BEI) in complex with maltopentaose.,Chaen K, Noguchi J, Omori T, Kakuta Y, Kimura M Biochem Biophys Res Commun. 2012 Aug 3;424(3):508-11. doi:, 10.1016/j.bbrc.2012.06.145. Epub 2012 Jul 3. PMID:22771800<ref>PMID:22771800</ref>	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class="pdbe-citations 3vu2" style="background-color:#fffaf0;"></div>~~	+
-	~~== References ==~~	+
-	~~<references/>~~	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: 1,4-alpha-glucan branching enzyme]]
-	[[Category: Japanese rice]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Chaen, K~~]]	+	[[Category: Oryza sativa Japonica Group]]
-	[[Category: ~~Kakuta, Y~~]]	+	[[Category: Chaen K]]
-	[[Category: ~~Kimura, M~~]]	+	[[Category: Kakuta Y]]
-	[[Category: ~~Carbohydrate-binding module 48]]~~	+	[[Category: Kimura M]]
-	~~[[Category: Transferase~~]]	+

OCA at 19:04, 27 July 2022

OCA — Wed, 27 Jul 2022 19:04:13 GMT

←Older revision		Revision as of 19:04, 27 July 2022
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	==Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentaose from Oryza sativa L==		==Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentaose from Oryza sativa L==
-	<StructureSection load='3vu2' size='340' side='right' caption='[[3vu2]], [[Resolution\|resolution]] 2.23Å' scene=''>	+	<StructureSection load='3vu2' size='340' side='right'caption='[[3vu2]], [[Resolution\|resolution]] 2.23Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3vu2]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Japanese_rice Japanese rice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VU2 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3VU2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3vu2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Japanese_rice Japanese rice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VU2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VU2 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=~~CEX~~:ALPHA-D-~~GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSE~~'>~~CEX~~</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3amk\|3amk]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3amk\|3amk]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SBE1, RBE1, Os06g0726400, LOC_Os06g51084, P0017G10.8-1, P0017G10.8-2, P0548E04.28-1, P0548E04.28-2 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39947 Japanese rice])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SBE1, RBE1, Os06g0726400, LOC_Os06g51084, P0017G10.8-1, P0017G10.8-2, P0548E04.28-1, P0548E04.28-2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39947 Japanese rice])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/1,4-alpha-glucan_branching_enzyme 1,4-alpha-glucan branching enzyme], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.18 2.4.1.18] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/1,4-alpha-glucan_branching_enzyme 1,4-alpha-glucan branching enzyme], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.18 2.4.1.18] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3vu2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vu2 OCA], [~~http~~://pdbe.org/3vu2 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3vu2 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3vu2 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3vu2 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vu2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vu2 OCA], [https://pdbe.org/3vu2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vu2 RCSB], [https://www.ebi.ac.uk/pdbsum/3vu2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vu2 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/GLGB_ORYSJ GLGB_ORYSJ]] Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.	+	[[https://www.uniprot.org/uniprot/GLGB_ORYSJ GLGB_ORYSJ]] Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 27:		Line 27:
	[[Category: 1,4-alpha-glucan branching enzyme]]		[[Category: 1,4-alpha-glucan branching enzyme]]
	[[Category: Japanese rice]]		[[Category: Japanese rice]]
		+	[[Category: Large Structures]]
	[[Category: Chaen, K]]		[[Category: Chaen, K]]
	[[Category: Kakuta, Y]]		[[Category: Kakuta, Y]]

OCA at 19:43, 5 August 2016

OCA — Fri, 05 Aug 2016 19:43:31 GMT

←Older revision		Revision as of 19:43, 5 August 2016
Line 1:		Line 1:
		+
	==Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentaose from Oryza sativa L==		==Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentaose from Oryza sativa L==
	<StructureSection load='3vu2' size='340' side='right' caption='[[3vu2]], [[Resolution\|resolution]] 2.23Å' scene=''>		<StructureSection load='3vu2' size='340' side='right' caption='[[3vu2]], [[Resolution\|resolution]] 2.23Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3vu2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Oryza_sativa_japonica_group Oryza sativa japonica group~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VU2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VU2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3vu2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Japanese_rice Japanese rice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VU2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VU2 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CEX:ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSE'>CEX</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CEX:ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSE'>CEX</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3amk\|3amk]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3amk\|3amk]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SBE1, RBE1, Os06g0726400, LOC_Os06g51084, P0017G10.8-1, P0017G10.8-2, P0548E04.28-1, P0548E04.28-2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39947 ~~Oryza sativa Japonica Group~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SBE1, RBE1, Os06g0726400, LOC_Os06g51084, P0017G10.8-1, P0017G10.8-2, P0548E04.28-1, P0548E04.28-2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39947 Japanese rice])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/1,4-alpha-glucan_branching_enzyme 1,4-alpha-glucan branching enzyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.18 2.4.1.18] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/1,4-alpha-glucan_branching_enzyme 1,4-alpha-glucan branching enzyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.18 2.4.1.18] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vu2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vu2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vu2 RCSB], [http://www.ebi.ac.uk/pdbsum/3vu2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vu2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vu2 OCA], [http://pdbe.org/3vu2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3vu2 RCSB], [http://www.ebi.ac.uk/pdbsum/3vu2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3vu2 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 20:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3vu2" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
Line 24:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: 1,4-alpha-glucan branching enzyme]]		[[Category: 1,4-alpha-glucan branching enzyme]]
-	[[Category: ~~Oryza sativa japonica group~~]]	+	[[Category: Japanese rice]]
	[[Category: Chaen, K]]		[[Category: Chaen, K]]
	[[Category: Kakuta, Y]]		[[Category: Kakuta, Y]]

OCA at 05:19, 25 December 2014

OCA — Thu, 25 Dec 2014 05:19:10 GMT

←Older revision		Revision as of 05:19, 25 December 2014
Line 9:		Line 9:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vu2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vu2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vu2 RCSB], [http://www.ebi.ac.uk/pdbsum/3vu2 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vu2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vu2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vu2 RCSB], [http://www.ebi.ac.uk/pdbsum/3vu2 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/GLGB_ORYSJ GLGB_ORYSJ]] Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 06:40, 21 December 2014

OCA — Sun, 21 Dec 2014 06:40:46 GMT

←Older revision		Revision as of 06:40, 21 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3vu2\| PDB=3vu2 \| SCENE= }}~~	+	==Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentaose from Oryza sativa L==
-	===Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentaose from Oryza sativa L===	+	<StructureSection load='3vu2' size='340' side='right' caption='[[3vu2]], [[Resolution\|resolution]] 2.23Å' scene=''>
-	~~{{ABSTRACT_PUBMED_22771800}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3vu2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa_japonica_group Oryza sativa japonica group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VU2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VU2 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CEX:ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSYL-(1- 4)-ALPHA-D-GLUCOPYRANOSE'>CEX</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3amk\|3amk]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SBE1, RBE1, Os06g0726400, LOC_Os06g51084, P0017G10.8-1, P0017G10.8-2, P0548E04.28-1, P0548E04.28-2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39947 Oryza sativa Japonica Group])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/1,4-alpha-glucan_branching_enzyme 1,4-alpha-glucan branching enzyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.18 2.4.1.18] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vu2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vu2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vu2 RCSB], [http://www.ebi.ac.uk/pdbsum/3vu2 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Starch branching enzyme (SBE) catalyzes the cleavage of alpha-1,4-linkages and the subsequent transfer of alpha-1,4 glucan to form an alpha-1,6 branch point in amylopectin. We determined the crystal structure of the rice branching enzyme I (BEI) in complex with maltopentaose at a resolution of 2.2A. Maltopentaose bound to a hydrophobic pocket formed by the N-terminal helix, carbohydrate-binding module 48 (CBM48), and alpha-amylase domain. In addition, glucose moieties could be observed at molecular surfaces on the N-terminal helix (alpha2) and CBM48. Amino acid residues involved in the carbohydrate bindings are highly conserved in other SBEs, suggesting their generally conserved role in substrate binding for SBEs.

-	~~==Function==~~	+	Crystal structure of the rice branching enzyme I (BEI) in complex with maltopentaose.,Chaen K, Noguchi J, Omori T, Kakuta Y, Kimura M Biochem Biophys Res Commun. 2012 Aug 3;424(3):508-11. doi:, 10.1016/j.bbrc.2012.06.145. Epub 2012 Jul 3. PMID:22771800<ref>PMID:22771800</ref>
-	~~[[http://www.uniprot.org/uniprot/GLGB_ORYSJ GLGB_ORYSJ]] Catalyzes the formation~~ of the ~~alpha-1,6-glucosidic linkages~~ in ~~starch by scission of a 1~~,~~4-alpha-linked oligosaccharide from growing alpha-1~~,4-~~glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1~~,~~6 position~~.	+

-	==~~About this Structure~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[3vu2]] is a 2 chain structure with sequence from [http:~~//~~en.wikipedia.org/wiki/Oryza_sativa_japonica_group Oryza sativa japonica group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VU2 OCA].~~	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: 1,4-alpha-glucan branching enzyme]]		[[Category: 1,4-alpha-glucan branching enzyme]]
	[[Category: Oryza sativa japonica group]]		[[Category: Oryza sativa japonica group]]
-	[[Category: Chaen, K.]]	+	[[Category: Chaen, K]]
-	[[Category: Kakuta, Y.]]	+	[[Category: Kakuta, Y]]
-	[[Category: Kimura, M.]]	+	[[Category: Kimura, M]]
	[[Category: Carbohydrate-binding module 48]]		[[Category: Carbohydrate-binding module 48]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 07:43, 8 May 2013

OCA — Wed, 08 May 2013 07:43:32 GMT

←Older revision		Revision as of 07:43, 8 May 2013
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{STRUCTURE_3vu2\| PDB=3vu2 \| SCENE= }}
		+	===Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentaose from Oryza sativa L===
		+	{{ABSTRACT_PUBMED_22771800}}

-	~~The entry 3vu2 is ON HOLD until Paper Publication~~	+	==Function==
		+	[[http://www.uniprot.org/uniprot/GLGB_ORYSJ GLGB_ORYSJ]] Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.

-	~~Authors~~: Chaen, K., Kakuta, Y., Kimura, M.	+	==About this Structure==
-		+	[[3vu2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa_japonica_group Oryza sativa japonica group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VU2 OCA].
-	~~Description~~: ~~Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentaose from Oryza sativa L~~	+	[[Category: 1,4-alpha-glucan branching enzyme]]
		+	[[Category: Oryza sativa japonica group]]
		+	[[Category: Chaen, K.]]
		+	[[Category: Kakuta, Y.]]
		+	[[Category: Kimura, M.]]
		+	[[Category: Carbohydrate-binding module 48]]
		+	[[Category: Transferase]]

OCA at 13:49, 28 November 2012

OCA — Wed, 28 Nov 2012 13:49:42 GMT

←Older revision		Revision as of 13:49, 28 November 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3vu2 is ON HOLD	+	The entry 3vu2 is ON HOLD until Paper Publication

	Authors: Chaen, K., Kakuta, Y., Kimura, M.		Authors: Chaen, K., Kakuta, Y., Kimura, M.

	Description: Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentaose from Oryza sativa L		Description: Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentaose from Oryza sativa L

OCA: Protected "3vu2" [edit=sysop:move=sysop]

OCA — Wed, 20 Jun 2012 07:14:01 GMT

Protected "3vu2" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:14, 20 June 2012

OCA: New page: '''Unreleased structure''' The entry 3vu2 is ON HOLD Authors: Chaen, K., Kakuta, Y., Kimura, M. Description: Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentao...

OCA — Wed, 20 Jun 2012 07:14:01 GMT

New page: '''Unreleased structure''' The entry 3vu2 is ON HOLD Authors: Chaen, K., Kakuta, Y., Kimura, M. Description: Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentao...

New page

'''Unreleased structure'''

The entry 3vu2 is ON HOLD

Authors: Chaen, K., Kakuta, Y., Kimura, M.

Description: Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentaose from Oryza sativa L