3wae - Revision history

OCA at 08:44, 20 March 2024

OCA — Wed, 20 Mar 2024 08:44:27 GMT

←Older revision		Revision as of 08:44, 20 March 2024
Line 3:		Line 3:
	<StructureSection load='3wae' size='340' side='right'caption='[[3wae]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='3wae' size='340' side='right'caption='[[3wae]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3wae]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WAE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WAE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3wae]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WAE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WAE FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>~~, ~~<scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[3waf\|3waf]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">TTHA1628 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 "Flavobacterium thermophilum" Yoshida and Oshima 1971])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wae OCA], [https://pdbe.org/3wae PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wae RCSB], [https://www.ebi.ac.uk/pdbsum/3wae PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wae ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wae OCA], [https://pdbe.org/3wae PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wae RCSB], [https://www.ebi.ac.uk/pdbsum/3wae PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wae ProSAT]</span></td></tr>
	</table>		</table>
-	~~<div style~~=~~"background-color:#fffaf0;">~~	+	== Function ==
-	=~~= Publication Abstract from PubMed~~ ==	+	[https://www.uniprot.org/uniprot/Q5SHV2_THET8 Q5SHV2_THET8]
-	Crystal structures of FbpA, the periplasmic ferric ion-binding protein of an iron-uptake ABC transporter, from Thermus thermophilus HB8 (TtFbpA) have been solved in apo and ferric ion-bound forms at 1.8 and 1.7 A resolution, respectively. The latter crystal structure shows that the bound ferric ion forms a novel six-coordinated complex with three tyrosine side chains, two bicarbonates and a water molecule in the metal-binding site. The results of gel-filtration chromatography and dynamic light scattering show that TtFbpA exists as a monomer in solution regardless of ferric ion binding and that TtFbpA adopts a more compact conformation in the ferric ion-bound state than in the apo state in solution.	+
-		+
-	A novel mode of ferric ion coordination by the periplasmic ferric ion-binding subunit FbpA of an ABC-type iron transporter from Thermus thermophilus HB8.,Wang S, Ogata M, Horita S, Ohtsuka J, Nagata K, Tanokura M Acta Crystallogr D Biol Crystallogr. 2014 Jan;70(Pt 1):~~196-202. doi:, 10.1107~~/~~S1399004713026333. Epub 2013 Dec 31. PMID:24419392<ref>PMID:24419392<~~/~~ref>~~	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U~~.S. ~~National Library of Medicine.<br>~~	+
-	</~~div>~~	+
-	~~<div class="pdbe-citations 3wae" style="background-color:#fffaf0;"><~~/~~div>~~	+

	==See Also==		==See Also==
	*[[ABC transporter 3D structures\|ABC transporter 3D structures]]		*[[ABC transporter 3D structures\|ABC transporter 3D structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Horita, S]]	+	[[Category: Thermus thermophilus]]
-	[[Category: Nagata, K]]	+	[[Category: Horita S]]
-	[[Category: Ogata, M]]	+	[[Category: Nagata K]]
-	[[Category: Ohtsuka, J]]	+	[[Category: Ogata M]]
-	[[Category: Tanokura, M]]	+	[[Category: Ohtsuka J]]
-	[[Category: Wang, S]]	+	[[Category: Tanokura M]]
-	~~[[Category: A ferric binding protein]]~~	+	[[Category: Wang S]]
-	~~[[Category: Ferric ion]]~~	+
-	~~[[Category: Metal binding protein~~]]	+

OCA at 05:29, 3 August 2022

OCA — Wed, 03 Aug 2022 05:29:02 GMT

←Older revision		Revision as of 05:29, 3 August 2022
Line 1:		Line 1:

	==X-ray structure of Fe(III)-bicarbonates-ttfbpa, a ferric ion-binding protein from thermus thermophilus HB8==		==X-ray structure of Fe(III)-bicarbonates-ttfbpa, a ferric ion-binding protein from thermus thermophilus HB8==
-	<StructureSection load='3wae' size='340' side='right' caption='[[3wae]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='3wae' size='340' side='right'caption='[[3wae]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3wae]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WAE OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3WAE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3wae]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WAE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WAE FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3waf\|3waf]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3waf\|3waf]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA1628 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 "Flavobacterium thermophilum" Yoshida and Oshima 1971])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA1628 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 "Flavobacterium thermophilum" Yoshida and Oshima 1971])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3wae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wae OCA], [~~http~~://pdbe.org/3wae PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3wae RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3wae PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3wae ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wae OCA], [https://pdbe.org/3wae PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wae RCSB], [https://www.ebi.ac.uk/pdbsum/3wae PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wae ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 18:		Line 18:
	</div>		</div>
	<div class="pdbe-citations 3wae" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3wae" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[ABC transporter 3D structures\|ABC transporter 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 23:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]		[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
		+	[[Category: Large Structures]]
	[[Category: Horita, S]]		[[Category: Horita, S]]
	[[Category: Nagata, K]]		[[Category: Nagata, K]]

OCA at 09:11, 21 February 2019

OCA — Thu, 21 Feb 2019 09:11:02 GMT

←Older revision		Revision as of 09:11, 21 February 2019
Line 3:		Line 3:
	<StructureSection load='3wae' size='340' side='right' caption='[[3wae]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='3wae' size='340' side='right' caption='[[3wae]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3wae]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WAE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WAE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3wae]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WAE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WAE FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3waf\|3waf]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3waf\|3waf]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA1628 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 "Flavobacterium thermophilum" Yoshida and Oshima 1971])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wae OCA], [http://pdbe.org/3wae PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3wae RCSB], [http://www.ebi.ac.uk/pdbsum/3wae PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3wae ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wae OCA], [http://pdbe.org/3wae PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3wae RCSB], [http://www.ebi.ac.uk/pdbsum/3wae PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3wae ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Horita, S]]		[[Category: Horita, S]]
	[[Category: Nagata, K]]		[[Category: Nagata, K]]

OCA at 12:38, 11 August 2016

OCA — Thu, 11 Aug 2016 12:38:53 GMT

←Older revision		Revision as of 12:38, 11 August 2016
Line 1:		Line 1:
		+
	==X-ray structure of Fe(III)-bicarbonates-ttfbpa, a ferric ion-binding protein from thermus thermophilus HB8==		==X-ray structure of Fe(III)-bicarbonates-ttfbpa, a ferric ion-binding protein from thermus thermophilus HB8==
	<StructureSection load='3wae' size='340' side='right' caption='[[3wae]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='3wae' size='340' side='right' caption='[[3wae]], [[Resolution\|resolution]] 1.70Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3waf\|3waf]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3waf\|3waf]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wae OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3wae RCSB], [http://www.ebi.ac.uk/pdbsum/3wae PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wae OCA], [http://pdbe.org/3wae PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3wae RCSB], [http://www.ebi.ac.uk/pdbsum/3wae PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3wae ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3wae" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 09:27, 4 January 2015

OCA — Sun, 04 Jan 2015 09:27:12 GMT

←Older revision		Revision as of 09:27, 4 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3wae]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WAE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WAE FirstGlance]. <br>		<table><tr><td colspan='2'>[[3wae]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WAE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WAE FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3waf\|3waf]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3waf\|3waf]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wae OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3wae RCSB], [http://www.ebi.ac.uk/pdbsum/3wae PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wae OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3wae RCSB], [http://www.ebi.ac.uk/pdbsum/3wae PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	A novel mode of ferric ion coordination by the periplasmic ferric ion-binding subunit FbpA of an ABC-type iron transporter from Thermus thermophilus HB8.,Wang S, Ogata M, Horita S, Ohtsuka J, Nagata K, Tanokura M Acta Crystallogr D Biol Crystallogr. 2014 Jan;70(Pt 1):196-202. doi:, 10.1107/S1399004713026333. Epub 2013 Dec 31. PMID:24419392<ref>PMID:24419392</ref>		A novel mode of ferric ion coordination by the periplasmic ferric ion-binding subunit FbpA of an ABC-type iron transporter from Thermus thermophilus HB8.,Wang S, Ogata M, Horita S, Ohtsuka J, Nagata K, Tanokura M Acta Crystallogr D Biol Crystallogr. 2014 Jan;70(Pt 1):196-202. doi:, 10.1107/S1399004713026333. Epub 2013 Dec 31. PMID:24419392<ref>PMID:24419392</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Horita, S.]]	+	[[Category: Horita, S]]
-	[[Category: Nagata, K.]]	+	[[Category: Nagata, K]]
-	[[Category: Ogata, M.]]	+	[[Category: Ogata, M]]
-	[[Category: Ohtsuka, J.]]	+	[[Category: Ohtsuka, J]]
-	[[Category: Tanokura, M.]]	+	[[Category: Tanokura, M]]
-	[[Category: Wang, S.]]	+	[[Category: Wang, S]]
	[[Category: A ferric binding protein]]		[[Category: A ferric binding protein]]
	[[Category: Ferric ion]]		[[Category: Ferric ion]]
	[[Category: Metal binding protein]]		[[Category: Metal binding protein]]

OCA at 08:58, 21 May 2014

OCA — Wed, 21 May 2014 08:58:07 GMT

←Older revision		Revision as of 08:58, 21 May 2014
Line 1:		Line 1:
-	'''~~Unreleased~~ structure'''	+	==X-ray structure of Fe(III)-bicarbonates-ttfbpa, a ferric ion-binding protein from thermus thermophilus HB8==
		+	<StructureSection load='3wae' size='340' side='right' caption='[[3wae]], [[Resolution\|resolution]] 1.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3wae]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WAE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WAE FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3waf\|3waf]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wae OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3wae RCSB], [http://www.ebi.ac.uk/pdbsum/3wae PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Crystal structures of FbpA, the periplasmic ferric ion-binding protein of an iron-uptake ABC transporter, from Thermus thermophilus HB8 (TtFbpA) have been solved in apo and ferric ion-bound forms at 1.8 and 1.7 A resolution, respectively. The latter crystal structure shows that the bound ferric ion forms a novel six-coordinated complex with three tyrosine side chains, two bicarbonates and a water molecule in the metal-binding site. The results of gel-filtration chromatography and dynamic light scattering show that TtFbpA exists as a monomer in solution regardless of ferric ion binding and that TtFbpA adopts a more compact conformation in the ferric ion-bound state than in the apo state in solution.

-	~~The entry 3wae is ON HOLD until Paper Publication~~	+	A novel mode of ferric ion coordination by the periplasmic ferric ion-binding subunit FbpA of an ABC-type iron transporter from Thermus thermophilus HB8.,Wang S, Ogata M, Horita S, Ohtsuka J, Nagata K, Tanokura M Acta Crystallogr D Biol Crystallogr. 2014 Jan;70(Pt 1):196-202. doi:, 10.1107/S1399004713026333. Epub 2013 Dec 31. PMID:24419392<ref>PMID:24419392</ref>

-	~~Authors: Wang~~, S.~~, Ogata, M~~., Horita, S.~~, Ohtsuka, J.,~~ Nagata, K., Tanokura, M.	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~Description~~: ~~X-ray structure of Fe(III)-bicarbonates-ttfbpa~~, a ferric ion-binding protein ~~from thermus thermophilus HB8~~	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Horita, S.]]
		+	[[Category: Nagata, K.]]
		+	[[Category: Ogata, M.]]
		+	[[Category: Ohtsuka, J.]]
		+	[[Category: Tanokura, M.]]
		+	[[Category: Wang, S.]]
		+	[[Category: A ferric binding protein]]
		+	[[Category: Ferric ion]]
		+	[[Category: Metal binding protein]]

OCA at 14:40, 10 July 2013

OCA — Wed, 10 Jul 2013 14:40:11 GMT

←Older revision		Revision as of 14:40, 10 July 2013
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3wae is ON HOLD	+	The entry 3wae is ON HOLD until Paper Publication

	Authors: Wang, S., Ogata, M., Horita, S., Ohtsuka, J., Nagata, K., Tanokura, M.		Authors: Wang, S., Ogata, M., Horita, S., Ohtsuka, J., Nagata, K., Tanokura, M.

	Description: X-ray structure of Fe(III)-bicarbonates-ttfbpa, a ferric ion-binding protein from thermus thermophilus HB8		Description: X-ray structure of Fe(III)-bicarbonates-ttfbpa, a ferric ion-binding protein from thermus thermophilus HB8

OCA at 10:36, 19 June 2013

OCA — Wed, 19 Jun 2013 10:36:43 GMT

←Older revision		Revision as of 10:36, 19 June 2013
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	Authors: Wang, S., Ogata, M., Horita, S., Ohtsuka, J., Nagata, K., Tanokura, M.		Authors: Wang, S., Ogata, M., Horita, S., Ohtsuka, J., Nagata, K., Tanokura, M.

-	Description: X-~~RAY STRUCTURE OF FE~~(III)-~~BICARBONATES~~-~~TTFBPA~~, ~~A FERRIC ION~~-~~BINDING PROTEIN FROM THERMUS THERMOPHILUS~~ HB8	+	Description: X-ray structure of Fe(III)-bicarbonates-ttfbpa, a ferric ion-binding protein from thermus thermophilus HB8

OCA: Protected "3wae" [edit=sysop:move=sysop]

OCA — Wed, 08 May 2013 07:02:41 GMT

Protected "3wae" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:02, 8 May 2013

OCA: New page: '''Unreleased structure''' The entry 3wae is ON HOLD Authors: Wang, S., Ogata, M., Horita, S., Ohtsuka, J., Nagata, K., Tanokura, M. Description: X-RAY STRUCTURE OF FE(III)-BICARBONATE...

OCA — Wed, 08 May 2013 07:02:40 GMT

New page: '''Unreleased structure''' The entry 3wae is ON HOLD Authors: Wang, S., Ogata, M., Horita, S., Ohtsuka, J., Nagata, K., Tanokura, M. Description: X-RAY STRUCTURE OF FE(III)-BICARBONATE...

New page

'''Unreleased structure'''

The entry 3wae is ON HOLD

Authors: Wang, S., Ogata, M., Horita, S., Ohtsuka, J., Nagata, K., Tanokura, M.

Description: X-RAY STRUCTURE OF FE(III)-BICARBONATES-TTFBPA, A FERRIC ION-BINDING PROTEIN FROM THERMUS THERMOPHILUS HB8