3wdy - Revision history

OCA at 13:06, 8 November 2023

OCA — Wed, 08 Nov 2023 13:06:44 GMT

←Older revision		Revision as of 13:06, 8 November 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3wdy]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Paecilomyces_sp._'thermophila' Paecilomyces sp. 'thermophila']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WDY FirstGlance]. <br>		<table><tr><td colspan='2'>[[3wdy]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Paecilomyces_sp._'thermophila' Paecilomyces sp. 'thermophila']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WDY FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=BGC:BETA~~-~~D-GLUCOSE'>BGC</scene>~~, ~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.94Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[3wdt\|3wdt]], [[3wdu\|3wdu]], [[3wdv\|3wdv]], [[3wdw\|3wdw]], [[3wdx\|3wdx]]~~</~~div~~><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=PRD_900005:beta-cellobiose'>PRD_900005</scene>, <scene name='pdbligand=PRD_900011:beta-cellotetraose'>PRD_900011</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<~~tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/Licheninase Licheninase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.73 3.2.1.73]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wdy OCA], [https://pdbe.org/3wdy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wdy RCSB], [https://www.ebi.ac.uk/pdbsum/3wdy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wdy ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wdy OCA], [https://pdbe.org/3wdy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wdy RCSB], [https://www.ebi.ac.uk/pdbsum/3wdy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wdy ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/E0XN39_9EURO E0XN39_9EURO]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 26:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Licheninase]]
	[[Category: Paecilomyces sp. 'thermophila']]		[[Category: Paecilomyces sp. 'thermophila']]
-	[[Category: Chen~~, C C~~]]	+	[[Category: Chen CC]]
-	[[Category: Cheng~~, Y S~~]]	+	[[Category: Cheng YS]]
-	[[Category: Guo~~, R T~~]]	+	[[Category: Guo RT]]
-	[[Category: Huang~~, C H~~]]	+	[[Category: Huang CH]]
-	[[Category: Huang~~, J W~~]]	+	[[Category: Huang JW]]
-	[[Category: Huang~~, T Y~~]]	+	[[Category: Huang TY]]
-	[[Category: Ko~~, T P~~]]	+	[[Category: Ko TP]]
-	[[Category: Liu~~, J R~~]]	+	[[Category: Liu JR]]
-	[[Category: Wu~~, T H]]~~	+	[[Category: Wu TH]]
-	~~[[Category: 3-1]]~~	+
-	~~[[Category: 4-beta-glucanase]]~~	+
-	~~[[Category: Beta-jellyroll fold]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Ptlic16a~~]]	+

OCA at 05:33, 3 August 2022

OCA — Wed, 03 Aug 2022 05:33:12 GMT

←Older revision		Revision as of 05:33, 3 August 2022
Line 1:		Line 1:

	==The complex structure of E113A with cellotetraose==		==The complex structure of E113A with cellotetraose==
-	<StructureSection load='3wdy' size='340' side='right' caption='[[3wdy]], [[Resolution\|resolution]] 1.94Å' scene=''>	+	<StructureSection load='3wdy' size='340' side='right'caption='[[3wdy]], [[Resolution\|resolution]] 1.94Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3wdy]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Paecilomyces_sp._'thermophila' Paecilomyces sp. 'thermophila']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WDY OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3WDY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3wdy]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Paecilomyces_sp._'thermophila' Paecilomyces sp. 'thermophila']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WDY FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene>, <scene name='pdbligand=CTT:BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSE'>CTT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3wdt\|3wdt]], [[3wdu\|3wdu]], [[3wdv\|3wdv]], [[3wdw\|3wdw]], [[3wdx\|3wdx]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3wdt\|3wdt]], [[3wdu\|3wdu]], [[3wdv\|3wdv]], [[3wdw\|3wdw]], [[3wdx\|3wdx]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Licheninase Licheninase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.73 3.2.1.73] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Licheninase Licheninase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.73 3.2.1.73] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3wdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wdy OCA], [~~http~~://pdbe.org/3wdy PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3wdy RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3wdy PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3wdy ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wdy OCA], [https://pdbe.org/3wdy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wdy RCSB], [https://www.ebi.ac.uk/pdbsum/3wdy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wdy ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 20:		Line 20:

	==See Also==		==See Also==
-	*[[Glucanase\|Glucanase]]	+	*[[Glucanase 3D structures\|Glucanase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Licheninase]]		[[Category: Licheninase]]
	[[Category: Paecilomyces sp. 'thermophila']]		[[Category: Paecilomyces sp. 'thermophila']]

OCA at 09:14, 21 February 2019

OCA — Thu, 21 Feb 2019 09:14:12 GMT

←Older revision		Revision as of 09:14, 21 February 2019
Line 3:		Line 3:
	<StructureSection load='3wdy' size='340' side='right' caption='[[3wdy]], [[Resolution\|resolution]] 1.94Å' scene=''>		<StructureSection load='3wdy' size='340' side='right' caption='[[3wdy]], [[Resolution\|resolution]] 1.94Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3wdy]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WDY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WDY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3wdy]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Paecilomyces_sp._'thermophila' Paecilomyces sp. 'thermophila']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WDY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WDY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene>, <scene name='pdbligand=CTT:BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSE'>CTT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene>, <scene name='pdbligand=CTT:BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSE'>CTT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3wdt\|3wdt]], [[3wdu\|3wdu]], [[3wdv\|3wdv]], [[3wdw\|3wdw]], [[3wdx\|3wdx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3wdt\|3wdt]], [[3wdu\|3wdu]], [[3wdv\|3wdv]], [[3wdw\|3wdw]], [[3wdx\|3wdx]]</td></tr>
Line 26:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Licheninase]]		[[Category: Licheninase]]
		+	[[Category: Paecilomyces sp. 'thermophila']]
	[[Category: Chen, C C]]		[[Category: Chen, C C]]
	[[Category: Cheng, Y S]]		[[Category: Cheng, Y S]]

OCA at 12:41, 11 August 2016

OCA — Thu, 11 Aug 2016 12:41:32 GMT

←Older revision		Revision as of 12:41, 11 August 2016
Line 1:		Line 1:
		+
	==The complex structure of E113A with cellotetraose==		==The complex structure of E113A with cellotetraose==
	<StructureSection load='3wdy' size='340' side='right' caption='[[3wdy]], [[Resolution\|resolution]] 1.94Å' scene=''>		<StructureSection load='3wdy' size='340' side='right' caption='[[3wdy]], [[Resolution\|resolution]] 1.94Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3wdt\|3wdt]], [[3wdu\|3wdu]], [[3wdv\|3wdv]], [[3wdw\|3wdw]], [[3wdx\|3wdx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3wdt\|3wdt]], [[3wdu\|3wdu]], [[3wdv\|3wdv]], [[3wdw\|3wdw]], [[3wdx\|3wdx]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Licheninase Licheninase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.73 3.2.1.73] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Licheninase Licheninase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.73 3.2.1.73] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wdy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3wdy RCSB], [http://www.ebi.ac.uk/pdbsum/3wdy PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wdy OCA], [http://pdbe.org/3wdy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3wdy RCSB], [http://www.ebi.ac.uk/pdbsum/3wdy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3wdy ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3wdy" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Glucanase\|Glucanase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:40, 5 January 2015

OCA — Mon, 05 Jan 2015 12:40:48 GMT

←Older revision		Revision as of 12:40, 5 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3wdy]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WDY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WDY FirstGlance]. <br>		<table><tr><td colspan='2'>[[3wdy]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WDY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WDY FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene>, <scene name='pdbligand=CTT:BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSE'>CTT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene>, <scene name='pdbligand=CTT:BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSE'>CTT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3wdt\|3wdt]], [[3wdu\|3wdu]], [[3wdv\|3wdv]], [[3wdw\|3wdw]], [[3wdx\|3wdx]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3wdt\|3wdt]], [[3wdu\|3wdu]], [[3wdv\|3wdv]], [[3wdw\|3wdw]], [[3wdx\|3wdx]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Licheninase Licheninase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.73 3.2.1.73] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Licheninase Licheninase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.73 3.2.1.73] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wdy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3wdy RCSB], [http://www.ebi.ac.uk/pdbsum/3wdy PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wdy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3wdy RCSB], [http://www.ebi.ac.uk/pdbsum/3wdy PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Licheninase]]		[[Category: Licheninase]]
-	[[Category: Chen, C C.]]	+	[[Category: Chen, C C]]
-	[[Category: Cheng, Y S.]]	+	[[Category: Cheng, Y S]]
-	[[Category: Guo, R T.]]	+	[[Category: Guo, R T]]
-	[[Category: Huang, C H.]]	+	[[Category: Huang, C H]]
-	[[Category: Huang, J W.]]	+	[[Category: Huang, J W]]
-	[[Category: Huang, T Y.]]	+	[[Category: Huang, T Y]]
-	[[Category: Ko, T P.]]	+	[[Category: Ko, T P]]
-	[[Category: Liu, J R.]]	+	[[Category: Liu, J R]]
-	[[Category: Wu, T H.]]	+	[[Category: Wu, T H]]
	[[Category: 3-1]]		[[Category: 3-1]]
	[[Category: 4-beta-glucanase]]		[[Category: 4-beta-glucanase]]

OCA at 07:24, 9 July 2014

OCA — Wed, 09 Jul 2014 07:24:22 GMT

←Older revision		Revision as of 07:24, 9 July 2014
Line 1:		Line 1:
-	'''~~Unreleased~~ structure'''	+	==The complex structure of E113A with cellotetraose==
		+	<StructureSection load='3wdy' size='340' side='right' caption='[[3wdy]], [[Resolution\|resolution]] 1.94Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3wdy]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WDY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WDY FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene>, <scene name='pdbligand=CTT:BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSYL-(1- 4)-BETA-D-GLUCOPYRANOSE'>CTT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3wdt\|3wdt]], [[3wdu\|3wdu]], [[3wdv\|3wdv]], [[3wdw\|3wdw]], [[3wdx\|3wdx]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Licheninase Licheninase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.73 3.2.1.73] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wdy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3wdy RCSB], [http://www.ebi.ac.uk/pdbsum/3wdy PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The thermostable 1,3-1,4-beta-glucanase PtLic16A from the fungus Paecilomyces thermophila catalyzes stringent hydrolysis of barley beta-glucan and lichenan with an outstanding efficiency and has great potential for broad industrial applications. Here, we report the crystal structures of PtLic16A and an inactive mutant E113A in ligand-free form and in complex with the ligands cellobiose, cellotetraose and glucotriose at 1.80A to 2.25A resolution. PtLic16A adopts a typical beta-jellyroll fold with a curved surface and the concave face forms an extended ligand binding cleft. These structures suggest that PtLic16A might carry out the hydrolysis via retaining mechanism with E113 and E118 serving as the nucleophile and general acid/base, respectively. Interestingly, in the structure of E113A/1,3-1,4-beta-glucotriose complex, the sugar bound to the -1 subsite adopts an intermediate-like (alpha-anomeric) configuration. By combining all crystal structures solved here, a comprehensive binding mode for a substrate is proposed. These findings not only help understand the 1,3-1,4-beta-glucanase catalytic mechanism but also provide a basis for further enzymatic engineering.

-	~~The entry 3wdy is ON HOLD until Paper Publication~~	+	Structural and mutagenetic analyses of a 1,3-1,4-beta-glucanase from Paecilomyces thermophila.,Cheng YS, Huang CH, Chen CC, Huang TY, Ko TP, Huang JW, Wu TH, Liu JR, Guo RT Biochim Biophys Acta. 2014 Feb;1844(2):366-73. doi: 10.1016/j.bbapap.2013.11.005., Epub 2013 Nov 18. PMID:24262091<ref>PMID:24262091</ref>

-	~~Authors: Cheng~~, Y.S.~~, Huang, C~~.~~H.,~~ Chen, C.C., ~~Huang, T.~~Y., ~~Ko,~~ T.P., Huang, J.W.~~, Wu~~, T.H., Liu, J.R., ~~Guo, R.~~T.	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~Description~~: ~~The complex structure of E113A with cellotetraose~~	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Licheninase]]
		+	[[Category: Chen, C C.]]
		+	[[Category: Cheng, Y S.]]
		+	[[Category: Guo, R T.]]
		+	[[Category: Huang, C H.]]
		+	[[Category: Huang, J W.]]
		+	[[Category: Huang, T Y.]]
		+	[[Category: Ko, T P.]]
		+	[[Category: Liu, J R.]]
		+	[[Category: Wu, T H.]]
		+	[[Category: 3-1]]
		+	[[Category: 4-beta-glucanase]]
		+	[[Category: Beta-jellyroll fold]]
		+	[[Category: Hydrolase]]
		+	[[Category: Ptlic16a]]

OCA at 04:40, 18 July 2013

OCA — Thu, 18 Jul 2013 04:40:02 GMT

←Older revision		Revision as of 04:40, 18 July 2013
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3wdy is ON HOLD	+	The entry 3wdy is ON HOLD until Paper Publication

	Authors: Cheng, Y.S., Huang, C.H., Chen, C.C., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T.		Authors: Cheng, Y.S., Huang, C.H., Chen, C.C., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T.

	Description: The complex structure of E113A with cellotetraose		Description: The complex structure of E113A with cellotetraose

OCA at 14:41, 10 July 2013

OCA — Wed, 10 Jul 2013 14:41:19 GMT

←Older revision		Revision as of 14:41, 10 July 2013
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	The entry 3wdy is ON HOLD		The entry 3wdy is ON HOLD

-	Authors: Cheng, Y.S., Huang, C,H,, Chen, C.C., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T.	+	Authors: Cheng, Y.S., Huang, C.H., Chen, C.C., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T.

	Description: The complex structure of E113A with cellotetraose		Description: The complex structure of E113A with cellotetraose

OCA: Protected "3wdy" [edit=sysop:move=sysop]

OCA — Wed, 03 Jul 2013 12:48:22 GMT

Protected "3wdy" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:48, 3 July 2013

OCA: New page: '''Unreleased structure''' The entry 3wdy is ON HOLD Authors: Cheng, Y.S., Huang, C,H,, Chen, C.C., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T. Description: The ...

OCA — Wed, 03 Jul 2013 12:48:21 GMT

New page: '''Unreleased structure''' The entry 3wdy is ON HOLD Authors: Cheng, Y.S., Huang, C,H,, Chen, C.C., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T. Description: The ...

New page

'''Unreleased structure'''

The entry 3wdy is ON HOLD

Authors: Cheng, Y.S., Huang, C,H,, Chen, C.C., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T.

Description: The complex structure of E113A with cellotetraose