3zjo - Revision history

OCA at 11:03, 20 December 2023

OCA — Wed, 20 Dec 2023 11:03:29 GMT

←Older revision		Revision as of 11:03, 20 December 2023
Line 3:		Line 3:
	<StructureSection load='3zjo' size='340' side='right'caption='[[3zjo]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3zjo' size='340' side='right'caption='[[3zjo]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3zjo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_35395 Atcc 35395~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZJO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZJO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3zjo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanosarcina_acetivorans Methanosarcina acetivorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZJO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZJO FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>~~, ~~<scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[3zjh\|3zjh]]~~, ~~[[3zji\|3zji]], [[3zjj\|3zjj]], [[3zjl\|3zjl]], [[3zjm\|3zjm]], [[3zjn\|3zjn]], [[3zjp\|3zjp]], [[3zjq\|3zjq]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zjo OCA], [https://pdbe.org/3zjo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zjo RCSB], [https://www.ebi.ac.uk/pdbsum/3zjo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zjo ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zjo OCA], [https://pdbe.org/3zjo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zjo RCSB], [https://www.ebi.ac.uk/pdbsum/3zjo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zjo ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q8TLY9_METAC Q8TLY9_METAC]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 35395]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Ascenzi, P]]	+	[[Category: Methanosarcina acetivorans]]
-	[[Category: Aste, E]]	+	[[Category: Ascenzi P]]
-	[[Category: Bolognesi, M]]	+	[[Category: Aste E]]
-	[[Category: Ciaccio, C]]	+	[[Category: Bolognesi M]]
-	[[Category: Coletta, M]]	+	[[Category: Ciaccio C]]
-	[[Category: Dewilde, S]]	+	[[Category: Coletta M]]
-	[[Category: Donne, J]]	+	[[Category: Dewilde S]]
-	[[Category: Moens, L]]	+	[[Category: Donne J]]
-	[[Category: Nardini, M]]	+	[[Category: Moens L]]
-	[[Category: Pesce, A]]	+	[[Category: Nardini M]]
-	[[Category: Tilleman, L]]	+	[[Category: Pesce A]]
-	[[Category: Viappiani, C]]	+	[[Category: Tilleman L]]
-	~~[[Category: Azide complex]]~~	+	[[Category: Viappiani C]]
-	~~[[Category: Haem-distal site mutation]]~~	+
-	~~[[Category: Iron-binding protein~~]]	+

OCA at 05:48, 10 August 2022

OCA — Wed, 10 Aug 2022 05:48:44 GMT

←Older revision		Revision as of 05:48, 10 August 2022
Line 1:		Line 1:

	==M.acetivorans protoglobin in complex with azide==		==M.acetivorans protoglobin in complex with azide==
-	<StructureSection load='3zjo' size='340' side='right' caption='[[3zjo]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='3zjo' size='340' side='right'caption='[[3zjo]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3zjo]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_35395 Atcc 35395]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZJO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ZJO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3zjo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_35395 Atcc 35395]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZJO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZJO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zjh\|3zjh]], [[3zji\|3zji]], [[3zjj\|3zjj]], [[3zjl\|3zjl]], [[3zjm\|3zjm]], [[3zjn\|3zjn]], [[3zjp\|3zjp]], [[3zjq\|3zjq]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3zjh\|3zjh]], [[3zji\|3zji]], [[3zjj\|3zjj]], [[3zjl\|3zjl]], [[3zjm\|3zjm]], [[3zjn\|3zjn]], [[3zjp\|3zjp]], [[3zjq\|3zjq]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3zjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zjo OCA], [~~http~~://pdbe.org/3zjo PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3zjo RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3zjo PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3zjo ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zjo OCA], [https://pdbe.org/3zjo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zjo RCSB], [https://www.ebi.ac.uk/pdbsum/3zjo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zjo ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 35395]]		[[Category: Atcc 35395]]
		+	[[Category: Large Structures]]
	[[Category: Ascenzi, P]]		[[Category: Ascenzi, P]]
	[[Category: Aste, E]]		[[Category: Aste, E]]

OCA at 17:06, 27 February 2019

OCA — Wed, 27 Feb 2019 17:06:53 GMT

←Older revision		Revision as of 17:06, 27 February 2019
Line 3:		Line 3:
	<StructureSection load='3zjo' size='340' side='right' caption='[[3zjo]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3zjo' size='340' side='right' caption='[[3zjo]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3zjo]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZJO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZJO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3zjo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_35395 Atcc 35395]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZJO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZJO FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zjh\|3zjh]], [[3zji\|3zji]], [[3zjj\|3zjj]], [[3zjl\|3zjl]], [[3zjm\|3zjm]], [[3zjn\|3zjn]], [[3zjp\|3zjp]], [[3zjq\|3zjq]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zjh\|3zjh]], [[3zji\|3zji]], [[3zjj\|3zjj]], [[3zjl\|3zjl]], [[3zjm\|3zjm]], [[3zjn\|3zjn]], [[3zjp\|3zjp]], [[3zjq\|3zjq]]</td></tr>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 35395]]
	[[Category: Ascenzi, P]]		[[Category: Ascenzi, P]]
	[[Category: Aste, E]]		[[Category: Aste, E]]

OCA at 14:53, 22 December 2016

OCA — Thu, 22 Dec 2016 14:53:30 GMT

←Older revision		Revision as of 14:53, 22 December 2016
Line 3:		Line 3:
	<StructureSection load='3zjo' size='340' side='right' caption='[[3zjo]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3zjo' size='340' side='right' caption='[[3zjo]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3zjo]] is a 2 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/Atcc_35395 Atcc 35395]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZJO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZJO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3zjo]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZJO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZJO FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zjh\|3zjh]], [[3zji\|3zji]], [[3zjj\|3zjj]], [[3zjl\|3zjl]], [[3zjm\|3zjm]], [[3zjn\|3zjn]], [[3zjp\|3zjp]], [[3zjq\|3zjq]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zjh\|3zjh]], [[3zji\|3zji]], [[3zjj\|3zjj]], [[3zjl\|3zjl]], [[3zjm\|3zjm]], [[3zjn\|3zjn]], [[3zjp\|3zjp]], [[3zjq\|3zjq]]</td></tr>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 35395]]
	[[Category: Ascenzi, P]]		[[Category: Ascenzi, P]]
	[[Category: Aste, E]]		[[Category: Aste, E]]
Line 28:		Line 27:
	[[Category: Coletta, M]]		[[Category: Coletta, M]]
	[[Category: Dewilde, S]]		[[Category: Dewilde, S]]
-	[[Category: Donne , J]]	+	[[Category: Donne, J]]
	[[Category: Moens, L]]		[[Category: Moens, L]]
	[[Category: Nardini, M]]		[[Category: Nardini, M]]

OCA at 10:21, 5 August 2016

OCA — Fri, 05 Aug 2016 10:21:49 GMT

←Older revision		Revision as of 10:21, 5 August 2016
Line 1:		Line 1:
		+
	==M.acetivorans protoglobin in complex with azide==		==M.acetivorans protoglobin in complex with azide==
	<StructureSection load='3zjo' size='340' side='right' caption='[[3zjo]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3zjo' size='340' side='right' caption='[[3zjo]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3zjo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Methanosarcina_acetivorans Methanosarcina acetivorans~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZJO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZJO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3zjo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_35395 Atcc 35395]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZJO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZJO FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zjh\|3zjh]], [[3zji\|3zji]], [[3zjj\|3zjj]], [[3zjl\|3zjl]], [[3zjm\|3zjm]], [[3zjn\|3zjn]], [[3zjp\|3zjp]], [[3zjq\|3zjq]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zjh\|3zjh]], [[3zji\|3zji]], [[3zjj\|3zjj]], [[3zjl\|3zjl]], [[3zjm\|3zjm]], [[3zjn\|3zjn]], [[3zjp\|3zjp]], [[3zjq\|3zjq]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zjo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zjo RCSB], [http://www.ebi.ac.uk/pdbsum/3zjo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zjo OCA], [http://pdbe.org/3zjo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3zjo RCSB], [http://www.ebi.ac.uk/pdbsum/3zjo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3zjo ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3zjo" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Methanosarcina acetivorans~~]]	+	[[Category: Atcc 35395]]
	[[Category: Ascenzi, P]]		[[Category: Ascenzi, P]]
	[[Category: Aste, E]]		[[Category: Aste, E]]

OCA at 10:04, 21 December 2014

OCA — Sun, 21 Dec 2014 10:04:32 GMT

←Older revision		Revision as of 10:04, 21 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3zjo~~\| ~~PDB~~=3zjo \| ~~SCENE~~= }}	+	==M.acetivorans protoglobin in complex with azide==
-	===M.acetivorans protoglobin in ~~complex~~ with azide~~===~~	+	<StructureSection load='3zjo' size='340' side='right' caption='[[3zjo]], [[Resolution\|resolution]] 1.80Å' scene=''>
-	~~{{ABSTRACT_PUBMED_23776624}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3zjo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_acetivorans Methanosarcina acetivorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZJO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZJO FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3zjh\|3zjh]], [[3zji\|3zji]], [[3zjj\|3zjj]], [[3zjl\|3zjl]], [[3zjm\|3zjm]], [[3zjn\|3zjn]], [[3zjp\|3zjp]], [[3zjq\|3zjq]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zjo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zjo RCSB], [http://www.ebi.ac.uk/pdbsum/3zjo PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Protoglobin from Methanosarcina acetivorans C2A (MaPgb), a strictly anaerobic methanogenic Archaea, is a dimeric haem-protein whose biological role is still unknown. As other globins, protoglobin can bind O2, CO and NO reversibly in vitro, but it displays specific functional and structural properties within members of the hemoglobin superfamily. CO binding to and dissociation from the haem occurs through biphasic kinetics, which arise from binding to (and dissociation from) two distinct tertiary states in a ligation-dependent equilibrium. From the structural viewpoint, protoglobin-specific loops and a N-terminal extension of 20 residues completely bury the haem within the protein matrix. Thus, access of small ligand molecules to the haem is granted by two apolar tunnels, not common to other globins, which reach the haem distal site from locations at the B/G and B/E helix interfaces. Here, the roles played by residues Trp(60)B9, Tyr(61)B10 and Phe(93)E11 in ligand recognition and stabilization are analyzed, through crystallographic investigations on the ferric protein and on selected mutants. Specifically, protein structures are reported for protoglobin complexes with cyanide, with azide (also in the presence of Xenon), and with more bulky ligands, such as imidazole and nicotinamide. Values of the rate constant for cyanide dissociation from ferric MaPgb-cyanide complexes have been correlated to hydrogen bonds provided by Trp(60)B9 and Tyr(61)B10 that stabilize the haem-Fe(III)-bound cyanide. We show that protoglobin can strikingly reshape, in a ligand-dependent way, the haem distal site, where Phe(93)E11 acts as ligand sensor and controls accessibility to the haem through the tunnel system by modifying the conformation of Trp(60)B9.

-	~~==About this~~ Structure==	+	Structure and Haem-Distal Site Plasticity in Methanosarcina acetivorans Protoglobin.,Pesce A, Tilleman L, Donne J, Aste E, Ascenzi P, Ciaccio C, Coletta M, Moens L, Viappiani C, Dewilde S, Bolognesi M, Nardini M PLoS One. 2013 Jun 12;8(6):e66144. doi: 10.1371/journal.pone.0066144. Print 2013. PMID:23776624<ref>PMID:23776624</ref>
-	~~[[3zjo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_acetivorans~~ Methanosarcina acetivorans]. ~~Full crystallographic information is available from [http~~:/~~/oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=3ZJO OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:023776624</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Methanosarcina acetivorans]]		[[Category: Methanosarcina acetivorans]]
-	[[Category: Ascenzi, P.]]	+	[[Category: Ascenzi, P]]
-	[[Category: Aste, E.]]	+	[[Category: Aste, E]]
-	[[Category: Bolognesi, M.]]	+	[[Category: Bolognesi, M]]
-	[[Category: Ciaccio, C.]]	+	[[Category: Ciaccio, C]]
-	[[Category: Coletta, M.]]	+	[[Category: Coletta, M]]
-	[[Category: Dewilde, S.]]	+	[[Category: Dewilde, S]]
-	[[Category: Donne , J.]]	+	[[Category: Donne , J]]
-	[[Category: Moens, L.]]	+	[[Category: Moens, L]]
-	[[Category: Nardini, M.]]	+	[[Category: Nardini, M]]
-	[[Category: Pesce, A.]]	+	[[Category: Pesce, A]]
-	[[Category: Tilleman, L.]]	+	[[Category: Tilleman, L]]
-	[[Category: Viappiani, C.]]	+	[[Category: Viappiani, C]]
	[[Category: Azide complex]]		[[Category: Azide complex]]
	[[Category: Haem-distal site mutation]]		[[Category: Haem-distal site mutation]]
	[[Category: Iron-binding protein]]		[[Category: Iron-binding protein]]

OCA at 10:13, 30 June 2013

OCA — Sun, 30 Jun 2013 10:13:47 GMT

←Older revision		Revision as of 10:13, 30 June 2013
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{STRUCTURE_3zjo\| PDB=3zjo \| SCENE= }}
		+	===M.acetivorans protoglobin in complex with azide===
		+	{{ABSTRACT_PUBMED_23776624}}

-	~~The entry~~ 3zjo is ~~ON HOLD until Paper Publication~~	+	==About this Structure==
		+	[[3zjo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_acetivorans Methanosarcina acetivorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZJO OCA].

-	~~Authors~~: ~~Pesce~~, A.~~, Tilleman, L., Donne', J.,~~ Aste, E., ~~Ascenzi, P~~., Ciaccio, C., Coletta, M.~~, Moens, L., Viappiani, C.,~~ Dewilde, S., ~~Bolognesi, M~~., Nardini, M.	+	==Reference==
-		+	<ref group="xtra">PMID:023776624</ref><references group="xtra"/><references/>
-	~~Description~~: M.~~acetivorans protoglobin in~~ complex ~~with azide~~	+	[[Category: Methanosarcina acetivorans]]
		+	[[Category: Ascenzi, P.]]
		+	[[Category: Aste, E.]]
		+	[[Category: Bolognesi, M.]]
		+	[[Category: Ciaccio, C.]]
		+	[[Category: Coletta, M.]]
		+	[[Category: Dewilde, S.]]
		+	[[Category: Donne , J.]]
		+	[[Category: Moens, L.]]
		+	[[Category: Nardini, M.]]
		+	[[Category: Pesce, A.]]
		+	[[Category: Tilleman, L.]]
		+	[[Category: Viappiani, C.]]
		+	[[Category: Azide complex]]
		+	[[Category: Haem-distal site mutation]]
		+	[[Category: Iron-binding protein]]

OCA at 00:34, 4 April 2013

OCA — Thu, 04 Apr 2013 00:34:34 GMT

←Older revision		Revision as of 00:34, 4 April 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3zjo is ON HOLD	+	The entry 3zjo is ON HOLD until Paper Publication

	Authors: Pesce, A., Tilleman, L., Donne', J., Aste, E., Ascenzi, P., Ciaccio, C., Coletta, M., Moens, L., Viappiani, C., Dewilde, S., Bolognesi, M., Nardini, M.		Authors: Pesce, A., Tilleman, L., Donne', J., Aste, E., Ascenzi, P., Ciaccio, C., Coletta, M., Moens, L., Viappiani, C., Dewilde, S., Bolognesi, M., Nardini, M.

	Description: M.acetivorans protoglobin in complex with azide		Description: M.acetivorans protoglobin in complex with azide

OCA at 11:48, 30 January 2013

OCA — Wed, 30 Jan 2013 11:48:30 GMT

←Older revision		Revision as of 11:48, 30 January 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3zjo is ON HOLD ~~until sometime in the future~~	+	The entry 3zjo is ON HOLD

	Authors: Pesce, A., Tilleman, L., Donne', J., Aste, E., Ascenzi, P., Ciaccio, C., Coletta, M., Moens, L., Viappiani, C., Dewilde, S., Bolognesi, M., Nardini, M.		Authors: Pesce, A., Tilleman, L., Donne', J., Aste, E., Ascenzi, P., Ciaccio, C., Coletta, M., Moens, L., Viappiani, C., Dewilde, S., Bolognesi, M., Nardini, M.

	Description: M.acetivorans protoglobin in complex with azide		Description: M.acetivorans protoglobin in complex with azide

OCA: Protected "3zjo" [edit=sysop:move=sysop]

OCA — Wed, 23 Jan 2013 10:58:21 GMT

Protected "3zjo" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:58, 23 January 2013