3zud - Revision history

OCA at 11:13, 20 December 2023

OCA — Wed, 20 Dec 2023 11:13:12 GMT

←Older revision		Revision as of 11:13, 20 December 2023
Line 3:		Line 3:
	<StructureSection load='3zud' size='340' side='right'caption='[[3zud]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='3zud' size='340' side='right'caption='[[3zud]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3zud]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Theau Theau~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZUD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZUD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3zud]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoascus_aurantiacus Thermoascus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZUD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZUD FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NAG:N~~-~~ACETYL-D-GLUCOSAMINE'>NAG</scene>~~, ~~<scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TAM:TRIS(HYDROXYETHYL)AMINOMETHANE'>TAM</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.25Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~HIC~~:~~4-METHYL-HISTIDINE~~'>~~HIC~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=HIC:4-METHYL-HISTIDINE'>HIC</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TAM:TRIS(HYDROXYETHYL)AMINOMETHANE'>TAM</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b~~></td><~~td class~~=~~"sblockDat"><div style~~=~~'overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[2yet\|2yet]]~~</~~div~~><~~/td></tr>~~	+
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zud OCA], [https://pdbe.org/3zud PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zud RCSB], [https://www.ebi.ac.uk/pdbsum/3zud PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zud ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zud OCA], [https://pdbe.org/3zud PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zud RCSB], [https://www.ebi.ac.uk/pdbsum/3zud PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zud ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/G3XAP7_THEAU G3XAP7_THEAU] Has endoglucanase activity on substrates containing beta-1,4 glycosidic bonds. Involved in the degradation of complex natural cellulosic substrates.[RuleBase:RU368122]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Cellulase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Theau~~]]	+	[[Category: Thermoascus aurantiacus]]
-	[[Category: Anthonsen, A]]	+	[[Category: Anthonsen A]]
-	[[Category: Davies~~, G J~~]]	+	[[Category: Davies GJ]]
-	[[Category: Dupree, P]]	+	[[Category: Dupree P]]
-	[[Category: Joergensen~~, C I~~]]	+	[[Category: Joergensen CI]]
-	[[Category: Johansen~~, K S~~]]	+	[[Category: Johansen KS]]
-	[[Category: Krogh~~, K B.R M~~]]	+	[[Category: Krogh KBRM]]
-	[[Category: Leggio, L Lo]]	+	[[Category: Lo Leggio L]]
-	[[Category: Otten, H]]	+	[[Category: Otten H]]
-	[[Category: Poulsen, J ~~C.N~~]]	+	[[Category: Poulsen J-CN]]
-	[[Category: Quinlan~~, R J~~]]	+	[[Category: Quinlan RJ]]
-	[[Category: Sweeney~~, M D~~]]	+	[[Category: Sweeney MD]]
-	[[Category: Tovborg, M]]	+	[[Category: Tovborg M]]
-	[[Category: Tryfona, T]]	+	[[Category: Tryfona T]]
-	[[Category: Walter~~, C P~~]]	+	[[Category: Walter CP]]
-	[[Category: Walton~~, P H~~]]	+	[[Category: Walton PH]]
-	[[Category: Xu, F]]	+	[[Category: Xu F]]
-	~~[[Category: Degradation of recalcitrant biomass]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 07:18, 18 August 2022

OCA — Thu, 18 Aug 2022 07:18:41 GMT

←Older revision		Revision as of 07:18, 18 August 2022
Line 1:		Line 1:

	==THERMOASCUS GH61 ISOZYME A==		==THERMOASCUS GH61 ISOZYME A==
-	<StructureSection load='3zud' size='340' side='right' caption='[[3zud]], [[Resolution\|resolution]] 1.25Å' scene=''>	+	<StructureSection load='3zud' size='340' side='right'caption='[[3zud]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3zud]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Theau Theau]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZUD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ZUD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3zud]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Theau Theau]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZUD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZUD FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TAM:TRIS(HYDROXYETHYL)AMINOMETHANE'>TAM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TAM:TRIS(HYDROXYETHYL)AMINOMETHANE'>TAM</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HIC:4-METHYL-HISTIDINE'>HIC</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HIC:4-METHYL-HISTIDINE'>HIC</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yet\|2yet]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2yet\|2yet]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3zud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zud OCA], [~~http~~://pdbe.org/3zud PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3zud RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3zud PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3zud ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zud OCA], [https://pdbe.org/3zud PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zud RCSB], [https://www.ebi.ac.uk/pdbsum/3zud PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zud ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Cellulase]]		[[Category: Cellulase]]
		+	[[Category: Large Structures]]
	[[Category: Theau]]		[[Category: Theau]]
	[[Category: Anthonsen, A]]		[[Category: Anthonsen, A]]

OCA at 10:34, 11 August 2016

OCA — Thu, 11 Aug 2016 10:34:19 GMT

←Older revision		Revision as of 10:34, 11 August 2016
Line 1:		Line 1:
		+
	==THERMOASCUS GH61 ISOZYME A==		==THERMOASCUS GH61 ISOZYME A==
	<StructureSection load='3zud' size='340' side='right' caption='[[3zud]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='3zud' size='340' side='right' caption='[[3zud]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3zud]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermoascus_aurantiacus Thermoascus aurantiacus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZUD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZUD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3zud]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Theau Theau]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZUD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZUD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TAM:TRIS(HYDROXYETHYL)AMINOMETHANE'>TAM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TAM:TRIS(HYDROXYETHYL)AMINOMETHANE'>TAM</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HIC:4-METHYL-HISTIDINE'>HIC</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HIC:4-METHYL-HISTIDINE'>HIC</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yet\|2yet]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yet\|2yet]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zud OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zud RCSB], [http://www.ebi.ac.uk/pdbsum/3zud PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zud OCA], [http://pdbe.org/3zud PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3zud RCSB], [http://www.ebi.ac.uk/pdbsum/3zud PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3zud ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3zud" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
Line 22:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Cellulase]]		[[Category: Cellulase]]
-	[[Category: ~~Thermoascus aurantiacus~~]]	+	[[Category: Theau]]
	[[Category: Anthonsen, A]]		[[Category: Anthonsen, A]]
	[[Category: Davies, G J]]		[[Category: Davies, G J]]

OCA at 11:02, 4 January 2015

OCA — Sun, 04 Jan 2015 11:02:33 GMT

←Older revision		Revision as of 11:02, 4 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3zud]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoascus_aurantiacus Thermoascus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZUD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZUD FirstGlance]. <br>		<table><tr><td colspan='2'>[[3zud]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoascus_aurantiacus Thermoascus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZUD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZUD FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TAM:TRIS(HYDROXYETHYL)AMINOMETHANE'>TAM</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TAM:TRIS(HYDROXYETHYL)AMINOMETHANE'>TAM</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HIC:4-METHYL-HISTIDINE'>HIC</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HIC:4-METHYL-HISTIDINE'>HIC</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yet\|2yet]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yet\|2yet]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zud OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zud RCSB], [http://www.ebi.ac.uk/pdbsum/3zud PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zud OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zud RCSB], [http://www.ebi.ac.uk/pdbsum/3zud PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 23:
	[[Category: Cellulase]]		[[Category: Cellulase]]
	[[Category: Thermoascus aurantiacus]]		[[Category: Thermoascus aurantiacus]]
-	[[Category: Anthonsen, A.]]	+	[[Category: Anthonsen, A]]
-	[[Category: Davies, G J.]]	+	[[Category: Davies, G J]]
-	[[Category: Dupree, P.]]	+	[[Category: Dupree, P]]
-	[[Category: Joergensen, C I.]]	+	[[Category: Joergensen, C I]]
-	[[Category: Johansen, K S.]]	+	[[Category: Johansen, K S]]
-	[[Category: Krogh, K B.R M.]]	+	[[Category: Krogh, K B.R M]]
-	[[Category: Leggio, L Lo.]]	+	[[Category: Leggio, L Lo]]
-	[[Category: Otten, H.]]	+	[[Category: Otten, H]]
-	[[Category: Poulsen, J C.N.]]	+	[[Category: Poulsen, J C.N]]
-	[[Category: Quinlan, R J.]]	+	[[Category: Quinlan, R J]]
-	[[Category: Sweeney, M D.]]	+	[[Category: Sweeney, M D]]
-	[[Category: Tovborg, M.]]	+	[[Category: Tovborg, M]]
-	[[Category: Tryfona, T.]]	+	[[Category: Tryfona, T]]
-	[[Category: Walter, C P.]]	+	[[Category: Walter, C P]]
-	[[Category: Walton, P H.]]	+	[[Category: Walton, P H]]
-	[[Category: Xu, F.]]	+	[[Category: Xu, F]]
	[[Category: Degradation of recalcitrant biomass]]		[[Category: Degradation of recalcitrant biomass]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 08:29, 5 June 2014

OCA — Thu, 05 Jun 2014 08:29:22 GMT

←Older revision		Revision as of 08:29, 5 June 2014
Line 1:		Line 1:
-	[[~~Image:~~3zud.~~png~~\|~~left~~\|~~200px~~]]	+	==THERMOASCUS GH61 ISOZYME A==
		+	<StructureSection load='3zud' size='340' side='right' caption='[[3zud]], [[Resolution\|resolution]] 1.25Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3zud]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoascus_aurantiacus Thermoascus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZUD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZUD FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TAM:TRIS(HYDROXYETHYL)AMINOMETHANE'>TAM</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HIC:4-METHYL-HISTIDINE'>HIC</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yet\|2yet]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zud OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zud RCSB], [http://www.ebi.ac.uk/pdbsum/3zud PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The enzymatic degradation of recalcitrant plant biomass is one of the key industrial challenges of the 21st century. Accordingly, there is a continuing drive to discover new routes to promote polysaccharide degradation. Perhaps the most promising approach involves the application of "cellulase-enhancing factors," such as those from the glycoside hydrolase (CAZy) GH61 family. Here we show that GH61 enzymes are a unique family of copper-dependent oxidases. We demonstrate that copper is needed for GH61 maximal activity and that the formation of cellodextrin and oxidized cellodextrin products by GH61 is enhanced in the presence of small molecule redox-active cofactors such as ascorbate and gallate. By using electron paramagnetic resonance spectroscopy and single-crystal X-ray diffraction, the active site of GH61 is revealed to contain a type II copper and, uniquely, a methylated histidine in the copper's coordination sphere, thus providing an innovative paradigm in bioinorganic enzymatic catalysis.

-	~~<!--~~	+	Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components.,Quinlan RJ, Sweeney MD, Lo Leggio L, Otten H, Poulsen JC, Johansen KS, Krogh KB, Jorgensen CI, Tovborg M, Anthonsen A, Tryfona T, Walter CP, Dupree P, Xu F, Davies GJ, Walton PH Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15079-84. Epub 2011 Aug 29. PMID:21876164<ref>PMID:21876164</ref>
-	~~The line below this paragraph~~, ~~containing "STRUCTURE_3zud"~~, ~~creates the "Structure Box" on the page~~.	+
-	~~You may change the PDB parameter~~ (~~which sets the PDB file loaded into the applet~~)	+
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~	+
-	~~or leave the SCENE parameter empty for the default display.~~	+
-	-->	+
-	~~{{STRUCTURE_3zud\| PDB=3zud \| SCENE= }}~~	+

-	~~===THERMOASCUS GH61 ISOZYME A===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-		+	== References ==
-	~~<!--~~	+	<references/>
-	~~The line below this paragraph~~, ~~{{ABSTRACT_PUBMED_21876164}}, adds~~ the ~~Publication Abstract to the page~~	+	__TOC__
-	~~(as it appears on PubMed at http://www~~.~~pubmed~~.~~gov), where 21876164 is the PubMed ID number~~.	+	</StructureSection>
-	-->	+
-	~~{{ABSTRACT_PUBMED_21876164}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3zud]] is a 1 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Thermoascus_aurantiacus Thermoascus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZUD OCA].~~	+
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:021876164<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Cellulase]]		[[Category: Cellulase]]
	[[Category: Thermoascus aurantiacus]]		[[Category: Thermoascus aurantiacus]]

OCA at 08:07, 30 October 2011

OCA — Sun, 30 Oct 2011 08:07:54 GMT

←Older revision		Revision as of 08:07, 30 October 2011
Line 1:		Line 1:
-	[[Image:3zud.~~jpg~~\|left\|200px]]	+	[[Image:3zud.png\|left\|200px]]

	<!--		<!--
Line 11:		Line 11:
	===THERMOASCUS GH61 ISOZYME A===		===THERMOASCUS GH61 ISOZYME A===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_21876164}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 21876164 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_21876164}}

	==About this Structure==		==About this Structure==
	[[3zud]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoascus_aurantiacus Thermoascus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZUD OCA].		[[3zud]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoascus_aurantiacus Thermoascus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZUD OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:021876164</ref><references group="xtra"/>
	[[Category: Cellulase]]		[[Category: Cellulase]]
	[[Category: Thermoascus aurantiacus]]		[[Category: Thermoascus aurantiacus]]

OCA at 06:23, 7 September 2011

OCA — Wed, 07 Sep 2011 06:23:16 GMT

←Older revision		Revision as of 06:23, 7 September 2011
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3zud.jpg\|left\|200px]]

-	The ~~entry 3zud~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3zud", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3zud\| PDB=3zud \| SCENE= }}

-	~~Authors: Otten, H., Quinlan, R.J., Sweeney, M.D., Poulsen, J.-C.N., Johansen, K.S., Krogh, K.B.R.M., Joergensen, C.I., Tovborg, M., Anthonsen,~~ A~~., Tryfona, T., Walter, C.P., Dupree, P., Xu, F., Davies, G.J., Walton, P.H., Lo Leggio, L.~~	+	===THERMOASCUS GH61 ISOZYME A===

-	~~Description~~: Thermoascus ~~GH61 isozyme~~ A	+
		+	==About this Structure==
		+	[[3zud]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoascus_aurantiacus Thermoascus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZUD OCA].
		+	[[Category: Cellulase]]
		+	[[Category: Thermoascus aurantiacus]]
		+	[[Category: Anthonsen, A.]]
		+	[[Category: Davies, G J.]]
		+	[[Category: Dupree, P.]]
		+	[[Category: Joergensen, C I.]]
		+	[[Category: Johansen, K S.]]
		+	[[Category: Krogh, K B.R M.]]
		+	[[Category: Leggio, L Lo.]]
		+	[[Category: Otten, H.]]
		+	[[Category: Poulsen, J C.N.]]
		+	[[Category: Quinlan, R J.]]
		+	[[Category: Sweeney, M D.]]
		+	[[Category: Tovborg, M.]]
		+	[[Category: Tryfona, T.]]
		+	[[Category: Walter, C P.]]
		+	[[Category: Walton, P H.]]
		+	[[Category: Xu, F.]]
		+	[[Category: Degradation of recalcitrant biomass]]
		+	[[Category: Hydrolase]]

OCA at 06:29, 31 August 2011

OCA — Wed, 31 Aug 2011 06:29:10 GMT

←Older revision		Revision as of 06:29, 31 August 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3zud is ON HOLD	+	The entry 3zud is ON HOLD until Paper Publication

	Authors: Otten, H., Quinlan, R.J., Sweeney, M.D., Poulsen, J.-C.N., Johansen, K.S., Krogh, K.B.R.M., Joergensen, C.I., Tovborg, M., Anthonsen, A., Tryfona, T., Walter, C.P., Dupree, P., Xu, F., Davies, G.J., Walton, P.H., Lo Leggio, L.		Authors: Otten, H., Quinlan, R.J., Sweeney, M.D., Poulsen, J.-C.N., Johansen, K.S., Krogh, K.B.R.M., Joergensen, C.I., Tovborg, M., Anthonsen, A., Tryfona, T., Walter, C.P., Dupree, P., Xu, F., Davies, G.J., Walton, P.H., Lo Leggio, L.

	Description: Thermoascus GH61 isozyme A		Description: Thermoascus GH61 isozyme A

OCA: Protected "3zud" [edit=sysop:move=sysop]

OCA — Wed, 27 Jul 2011 05:48:54 GMT

Protected "3zud" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:48, 27 July 2011

OCA: New page: '''Unreleased structure''' The entry 3zud is ON HOLD Authors: Otten, H., Quinlan, R.J., Sweeney, M.D., Poulsen, J.-C.N., Johansen, K.S., Krogh, K.B.R.M., Joergensen, C.I., Tovborg, M., ...

OCA — Wed, 27 Jul 2011 05:48:53 GMT

New page: '''Unreleased structure''' The entry 3zud is ON HOLD Authors: Otten, H., Quinlan, R.J., Sweeney, M.D., Poulsen, J.-C.N., Johansen, K.S., Krogh, K.B.R.M., Joergensen, C.I., Tovborg, M., ...

New page

'''Unreleased structure'''

The entry 3zud is ON HOLD

Authors: Otten, H., Quinlan, R.J., Sweeney, M.D., Poulsen, J.-C.N., Johansen, K.S., Krogh, K.B.R.M., Joergensen, C.I., Tovborg, M., Anthonsen, A., Tryfona, T., Walter, C.P., Dupree, P., Xu, F., Davies, G.J., Walton, P.H., Lo Leggio, L.

Description: Thermoascus GH61 isozyme A