3zyp - Revision history

OCA at 07:28, 18 August 2022

OCA — Thu, 18 Aug 2022 07:28:36 GMT

←Older revision		Revision as of 07:28, 18 August 2022
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	<StructureSection load='3zyp' size='340' side='right'caption='[[3zyp]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='3zyp' size='340' side='right'caption='[[3zyp]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3zyp]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_13631 Atcc 13631]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZYP OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ZYP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3zyp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_13631 Atcc 13631]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZYP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZYP FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3zyp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zyp OCA], [~~http~~://pdbe.org/3zyp PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3zyp RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3zyp PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3zyp ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zyp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zyp OCA], [https://pdbe.org/3zyp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zyp RCSB], [https://www.ebi.ac.uk/pdbsum/3zyp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zyp ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:42, 11 March 2020

OCA — Wed, 11 Mar 2020 07:42:01 GMT

←Older revision		Revision as of 07:42, 11 March 2020
Line 1:		Line 1:

	==Cellulose induced protein, Cip1==		==Cellulose induced protein, Cip1==
-	<StructureSection load='3zyp' size='340' side='right' caption='[[3zyp]], [[Resolution\|resolution]] 1.50Å' scene=''>	+	<StructureSection load='3zyp' size='340' side='right'caption='[[3zyp]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3zyp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_13631 Atcc 13631]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZYP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZYP FirstGlance]. <br>		<table><tr><td colspan='2'>[[3zyp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_13631 Atcc 13631]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZYP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZYP FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Atcc 13631]]		[[Category: Atcc 13631]]
		+	[[Category: Large Structures]]
	[[Category: Goedegebuur, F]]		[[Category: Goedegebuur, F]]
	[[Category: Hansson, H]]		[[Category: Hansson, H]]

OCA at 14:26, 11 August 2016

OCA — Thu, 11 Aug 2016 14:26:00 GMT

←Older revision		Revision as of 14:26, 11 August 2016
Line 1:		Line 1:
		+
	==Cellulose induced protein, Cip1==		==Cellulose induced protein, Cip1==
	<StructureSection load='3zyp' size='340' side='right' caption='[[3zyp]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='3zyp' size='340' side='right' caption='[[3zyp]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3zyp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Trichoderma_reesei Trichoderma reesei~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZYP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZYP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3zyp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_13631 Atcc 13631]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZYP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZYP FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zyp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zyp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zyp RCSB], [http://www.ebi.ac.uk/pdbsum/3zyp PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zyp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zyp OCA], [http://pdbe.org/3zyp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3zyp RCSB], [http://www.ebi.ac.uk/pdbsum/3zyp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3zyp ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3zyp" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Trichoderma reesei~~]]	+	[[Category: Atcc 13631]]
	[[Category: Goedegebuur, F]]		[[Category: Goedegebuur, F]]
	[[Category: Hansson, H]]		[[Category: Hansson, H]]

OCA at 07:59, 20 January 2015

OCA — Tue, 20 Jan 2015 07:59:28 GMT

←Older revision		Revision as of 07:59, 20 January 2015
Line 1:		Line 1:
-	~~{{STRUCTURE_3zyp~~\| ~~PDB~~=3zyp \| ~~SCENE~~= }}	+	==Cellulose induced protein, Cip1==
-	===~~Cellulose induced protein~~, ~~Cip1~~===	+	<StructureSection load='3zyp' size='340' side='right' caption='[[3zyp]], [[Resolution\|resolution]] 1.50Å' scene=''>
-	~~{{ABSTRACT_PUBMED_24039705}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3zyp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Trichoderma_reesei Trichoderma reesei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZYP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZYP FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zyp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zyp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zyp RCSB], [http://www.ebi.ac.uk/pdbsum/3zyp PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	In an effort to characterise the whole transcriptome of the fungus Hypocrea jecorina, cDNA clones of this fungus were identified that encode for previously unknown proteins that are likely to function in biomass degradation. One of these newly identified proteins, found to be co-regulated with the major H. jecorina cellulases, is a protein that was denoted Cellulose induced protein 1 (Cip1). This protein consists of a glycoside hydrolase family 1 carbohydrate binding module connected via a linker region to a domain with yet unknown function. After cloning and expression of Cip1 in H. jecorina, the protein was purified and biochemically characterised with the aim of determining a potential enzymatic activity for the novel protein. No hydrolytic activity against any of the tested plant cell wall components was found. The proteolytic core domain of Cip1 was then crystallised, and the three-dimensional structure of this was determined to 1.5 A resolution utilising sulphur single-wavelength anomalous dispersion phasing (sulphor-SAD). A calcium ion binding site was identified in a sequence conserved region of Cip1 and is also seen in other proteins with the same general fold as Cip1, such as many carbohydrate binding modules. The presence of this ion was found to have a structural role. The Cip1 structure was analysed and a structural homology search was performed to identify structurally related proteins. The two published structures with highest overall structural similarity to Cip1 found were two poly-lyases: CsGL, a glucuronan lyase from H. jecorina and vAL-1, an alginate lyase from the Chlorella virus. This indicates that Cip1 may be a lyase. However, initial trials did not detect significant lyase activity for Cip1. Cip1 is the first structure to be solved of the 23 currently known Cip1 sequential homologs (with a sequence identity cut-off of 25%), including both bacterial and fungal members.

-	~~==About this~~ Structure==	+	The Crystal Structure of the Core Domain of a Cellulose Induced Protein (Cip1) from Hypocrea jecorina, at 1.5 A Resolution.,Jacobson F, Karkehabadi S, Hansson H, Goedegebuur F, Wallace L, Mitchinson C, Piens K, Stals I, Sandgren M PLoS One. 2013 Sep 5;8(9):e70562. doi: 10.1371/journal.pone.0070562. PMID:24039705<ref>PMID:24039705</ref>
-	~~[[3zyp]] is~~ a 1 ~~chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Trichoderma_reesei Trichoderma reesei]~~. ~~Full crystallographic information is available from [http~~:/~~/oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=3ZYP OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:024039705</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Trichoderma reesei]]		[[Category: Trichoderma reesei]]
-	[[Category: Goedegebuur, F.]]	+	[[Category: Goedegebuur, F]]
-	[[Category: Hansson, H.]]	+	[[Category: Hansson, H]]
-	[[Category: Jacobson, F.]]	+	[[Category: Jacobson, F]]
-	[[Category: Karkehabadi, S.]]	+	[[Category: Karkehabadi, S]]
-	[[Category: Mitchinson, C.]]	+	[[Category: Mitchinson, C]]
-	[[Category: Piens, K.]]	+	[[Category: Piens, K]]
-	[[Category: Sandgren, M.]]	+	[[Category: Sandgren, M]]
-	[[Category: Stals, I.]]	+	[[Category: Stals, I]]
-	[[Category: Wallace, L.]]	+	[[Category: Wallace, L]]
	[[Category: Beta sandwich jelly roll]]		[[Category: Beta sandwich jelly roll]]
	[[Category: Calcium-binding]]		[[Category: Calcium-binding]]

OCA at 06:38, 29 September 2013

OCA — Sun, 29 Sep 2013 06:38:17 GMT

←Older revision		Revision as of 06:38, 29 September 2013
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-	[[Image:3zyp.jpg\|left\|200px]]
-
	{{STRUCTURE_3zyp\| PDB=3zyp \| SCENE= }}		{{STRUCTURE_3zyp\| PDB=3zyp \| SCENE= }}
-
	===Cellulose induced protein, Cip1===		===Cellulose induced protein, Cip1===
-		+	{{ABSTRACT_PUBMED_24039705}}

	==About this Structure==		==About this Structure==
	[[3zyp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Trichoderma_reesei Trichoderma reesei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZYP OCA].		[[3zyp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Trichoderma_reesei Trichoderma reesei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZYP OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:024039705</ref><references group="xtra"/><references/>
	[[Category: Trichoderma reesei]]		[[Category: Trichoderma reesei]]
	[[Category: Goedegebuur, F.]]		[[Category: Goedegebuur, F.]]

OCA at 05:19, 12 September 2012

OCA — Wed, 12 Sep 2012 05:19:51 GMT

←Older revision		Revision as of 05:19, 12 September 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3zyp.jpg\|left\|200px]]

-	~~The entry~~ 3zyp ~~is ON HOLD~~ ~~until Paper Publication~~	+	{{STRUCTURE_3zyp\| PDB=3zyp \| SCENE= }}

-	~~Authors: Jacobson~~, ~~F., Karkehabadi, S., Hansson, H., Goedegebuur, F., Wallace, L., Mitchinson, C., Piens, K., Stals, I., Sandgren, M.~~	+	===Cellulose induced protein, Cip1===

-	~~Description~~: ~~Cellulose induced protein~~, ~~Cip1~~	+
		+	==About this Structure==
		+	[[3zyp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Trichoderma_reesei Trichoderma reesei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZYP OCA].
		+	[[Category: Trichoderma reesei]]
		+	[[Category: Goedegebuur, F.]]
		+	[[Category: Hansson, H.]]
		+	[[Category: Jacobson, F.]]
		+	[[Category: Karkehabadi, S.]]
		+	[[Category: Mitchinson, C.]]
		+	[[Category: Piens, K.]]
		+	[[Category: Sandgren, M.]]
		+	[[Category: Stals, I.]]
		+	[[Category: Wallace, L.]]
		+	[[Category: Beta sandwich jelly roll]]
		+	[[Category: Calcium-binding]]
		+	[[Category: Carbohydrate-binding]]
		+	[[Category: Cbm-containing]]
		+	[[Category: Metal binding protein]]

OCA: Protected "3zyp" [edit=sysop:move=sysop]

OCA — Wed, 31 Aug 2011 06:30:20 GMT

Protected "3zyp" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:30, 31 August 2011

OCA: New page: '''Unreleased structure''' The entry 3zyp is ON HOLD until Paper Publication Authors: Jacobson, F., Karkehabadi, S., Hansson, H., Goedegebuur, F., Wallace, L., Mitchinson, C., Piens, K....

OCA — Wed, 31 Aug 2011 06:30:19 GMT

New page: '''Unreleased structure''' The entry 3zyp is ON HOLD until Paper Publication Authors: Jacobson, F., Karkehabadi, S., Hansson, H., Goedegebuur, F., Wallace, L., Mitchinson, C., Piens, K....

New page

'''Unreleased structure'''

The entry 3zyp is ON HOLD until Paper Publication

Authors: Jacobson, F., Karkehabadi, S., Hansson, H., Goedegebuur, F., Wallace, L., Mitchinson, C., Piens, K., Stals, I., Sandgren, M.

Description: Cellulose induced protein, Cip1