431d - Revision history

OCA at 10:38, 1 March 2024

OCA — Fri, 01 Mar 2024 10:38:28 GMT

←Older revision		Revision as of 10:38, 1 March 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[431d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=431D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=431D FirstGlance]. <br>		<table><tr><td colspan='2'>[[431d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=431D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=431D FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.15Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=431d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=431d OCA], [https://pdbe.org/431d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=431d RCSB], [https://www.ebi.ac.uk/pdbsum/431d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=431d ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=431d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=431d OCA], [https://pdbe.org/431d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=431d RCSB], [https://www.ebi.ac.uk/pdbsum/431d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=431d ProSAT]</span></td></tr>
	</table>		</table>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Despite the importance of hydration around DNA in the understanding of its conformation and interactions with other molecules in many biological processes, only limited atomic resolution information is available. Crystal-engineering techniques, which were originally developed to mimic DNA base triplets in a crystal lattice, also eliminate the rotational disorder of oligonucleotides around their helical axis and thereby enhance the resolution of the structure analysis. We have determined the low-temperature crystal structure of the synthetic DNA decamer d(GGCCAATTGG) at atomic resolution (1. 15 A) using 17700 reflections and have characterized the highly organized hydration patterns in both grooves. The narrow d(AATT) minor groove is occupied by an 'extended hydration spine' alternately bridging base pairs and phosphate O1P atoms of opposite strands, while a distinctive pattern of parallel water ribbons is observed in the major groove. This analysis provides structural insight into the correlation found between narrow minor-groove width and occurrence of the B(I) conformation and can be used to design new minor-groove binders. By their location between adjacent helices, two fully hydrated magnesium ions further stabilize the crystal packing. The structure also provides details of the hydration and conformation of G.GC triple helices.
-
-	B-DNA at atomic resolution reveals extended hydration patterns.,Vlieghe D, Turkenburg JP, Van Meervelt L Acta Crystallogr D Biol Crystallogr. 1999 Sep;55(Pt 9):1495-502. PMID:10489444<ref>PMID:10489444</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 431d" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Meervelt, L Van~~]]	+	[[Category: Turkenburg JP]]
-	[[Category: ~~Turkenburg, J P~~]]	+	[[Category: Van Meervelt L]]
-	[[Category: Vlieghe, D]]	+	[[Category: Vlieghe D]]
-	~~[[Category: Atomic resolution]]~~	+
-	~~[[Category: Deoxyribonucleic acid]]~~	+
-	~~[[Category: Dna]]~~	+
-	~~[[Category: Double backbone conformation]]~~	+
-	~~[[Category: Extended hydration spine]]~~	+
-	~~[[Category: Triplet formation~~]]	+

OCA at 07:32, 18 August 2022

OCA — Thu, 18 Aug 2022 07:32:55 GMT

←Older revision		Revision as of 07:32, 18 August 2022
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	==5'-D(GPGPCPCPAPAPTPTPGPG)-3'==		==5'-D(GPGPCPCPAPAPTPTPGPG)-3'==
-	<StructureSection load='431d' size='340' side='right' caption='[[431d]], [[Resolution\|resolution]] 1.15Å' scene=''>	+	<StructureSection load='431d' size='340' side='right'caption='[[431d]], [[Resolution\|resolution]] 1.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[431d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=431D OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=431D FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[431d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=431D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=431D FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=431d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=431d OCA], [~~http~~://pdbe.org/431d PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=431d RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/431d PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=431d ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=431d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=431d OCA], [https://pdbe.org/431d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=431d RCSB], [https://www.ebi.ac.uk/pdbsum/431d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=431d ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Meervelt, L Van]]		[[Category: Meervelt, L Van]]
	[[Category: Turkenburg, J P]]		[[Category: Turkenburg, J P]]

OCA at 19:58, 4 August 2016

OCA — Thu, 04 Aug 2016 19:58:38 GMT

←Older revision		Revision as of 19:58, 4 August 2016
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		+
	==5'-D(GPGPCPCPAPAPTPTPGPG)-3'==		==5'-D(GPGPCPCPAPAPTPTPGPG)-3'==
	<StructureSection load='431d' size='340' side='right' caption='[[431d]], [[Resolution\|resolution]] 1.15Å' scene=''>		<StructureSection load='431d' size='340' side='right' caption='[[431d]], [[Resolution\|resolution]] 1.15Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[431d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=431D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=431D FirstGlance]. <br>		<table><tr><td colspan='2'>[[431d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=431D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=431D FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=431d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=431d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=431d RCSB], [http://www.ebi.ac.uk/pdbsum/431d PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=431d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=431d OCA], [http://pdbe.org/431d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=431d RCSB], [http://www.ebi.ac.uk/pdbsum/431d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=431d ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 431d" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 10:06, 21 December 2014

OCA — Sun, 21 Dec 2014 10:06:51 GMT

←Older revision		Revision as of 10:06, 21 December 2014
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-	~~{{STRUCTURE_431d\| PDB=431d \| SCENE= }}~~	+	==5'-D(GPGPCPCPAPAPTPTPGPG)-3'==
-	===5'-D(GPGPCPCPAPAPTPTPGPG)-3'===	+	<StructureSection load='431d' size='340' side='right' caption='[[431d]], [[Resolution\|resolution]] 1.15Å' scene=''>
-	~~{{ABSTRACT_PUBMED_10489444}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[431d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=431D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=431D FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=431d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=431d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=431d RCSB], [http://www.ebi.ac.uk/pdbsum/431d PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Despite the importance of hydration around DNA in the understanding of its conformation and interactions with other molecules in many biological processes, only limited atomic resolution information is available. Crystal-engineering techniques, which were originally developed to mimic DNA base triplets in a crystal lattice, also eliminate the rotational disorder of oligonucleotides around their helical axis and thereby enhance the resolution of the structure analysis. We have determined the low-temperature crystal structure of the synthetic DNA decamer d(GGCCAATTGG) at atomic resolution (1. 15 A) using 17700 reflections and have characterized the highly organized hydration patterns in both grooves. The narrow d(AATT) minor groove is occupied by an 'extended hydration spine' alternately bridging base pairs and phosphate O1P atoms of opposite strands, while a distinctive pattern of parallel water ribbons is observed in the major groove. This analysis provides structural insight into the correlation found between narrow minor-groove width and occurrence of the B(I) conformation and can be used to design new minor-groove binders. By their location between adjacent helices, two fully hydrated magnesium ions further stabilize the crystal packing. The structure also provides details of the hydration and conformation of G.GC triple helices.

-	~~==About this Structure==~~	+	B-DNA at atomic resolution reveals extended hydration patterns.,Vlieghe D, Turkenburg JP, Van Meervelt L Acta Crystallogr D Biol Crystallogr. 1999 Sep;55(Pt 9):1495-502. PMID:10489444<ref>PMID:10489444</ref>
-	~~[[431d]] is a 2 chain structure~~. ~~Full crystallographic information is available from [http~~:~~//oca~~.~~weizmann.ac.il~~/~~oca-bin/ocashort?id=431D OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:010489444</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
-	[[Category: Meervelt, L Van.]]	+	== References ==
-	[[Category: Turkenburg, J P.]]	+	<references/>
-	[[Category: Vlieghe, D.]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Meervelt, L Van]]
		+	[[Category: Turkenburg, J P]]
		+	[[Category: Vlieghe, D]]
	[[Category: Atomic resolution]]		[[Category: Atomic resolution]]
	[[Category: Deoxyribonucleic acid]]		[[Category: Deoxyribonucleic acid]]

OCA: Protected "431d" [edit=sysop:move=sysop]

OCA — Thu, 16 May 2013 08:08:48 GMT

Protected "431d" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:08, 16 May 2013

OCA at 08:08, 16 May 2013

OCA — Thu, 16 May 2013 08:08:45 GMT

←Older revision		Revision as of 08:08, 16 May 2013
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-	{{Seed}}
-	[[Image:431d.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_431d", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_431d\| PDB=431d \| SCENE= }}		{{STRUCTURE_431d\| PDB=431d \| SCENE= }}
-
	===5'-D(GPGPCPCPAPAPTPTPGPG)-3'===		===5'-D(GPGPCPCPAPAPTPTPGPG)-3'===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_10489444}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 10489444 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_10489444}}		{{ABSTRACT_PUBMED_10489444}}

	==About this Structure==		==About this Structure==
-	~~431D~~ is a 2 ~~chains~~ structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=431D OCA].	+	[[431d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=431D OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~10489444~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:010489444</ref><references group="xtra"/><references/>
	[[Category: Meervelt, L Van.]]		[[Category: Meervelt, L Van.]]
	[[Category: Turkenburg, J P.]]		[[Category: Turkenburg, J P.]]
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	[[Category: Extended hydration spine]]		[[Category: Extended hydration spine]]
	[[Category: Triplet formation]]		[[Category: Triplet formation]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 21 21:02:31 2009''

OCA at 18:02, 21 September 2009

OCA — Mon, 21 Sep 2009 18:02:33 GMT

←Older revision		Revision as of 18:02, 21 September 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=431D OCA].	+	431D is a 2 chains structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=431D OCA].

	==Reference==		==Reference==
-	~~B-DNA at atomic resolution reveals extended hydration patterns., Vlieghe D, Turkenburg JP, Van Meervelt L, Acta Crystallogr D Biol Crystallogr. 1999 Sep;55(Pt 9):1495-502.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/10489444 10489444]~~	+	<ref group="xtra">PMID:10489444</ref><references group="xtra"/>
	[[Category: Meervelt, L Van.]]		[[Category: Meervelt, L Van.]]
	[[Category: Turkenburg, J P.]]		[[Category: Turkenburg, J P.]]
Line 29:		Line 29:
	[[Category: Atomic resolution]]		[[Category: Atomic resolution]]
	[[Category: Deoxyribonucleic acid]]		[[Category: Deoxyribonucleic acid]]
		+	[[Category: Dna]]
	[[Category: Double backbone conformation]]		[[Category: Double backbone conformation]]
	[[Category: Extended hydration spine]]		[[Category: Extended hydration spine]]
	[[Category: Triplet formation]]		[[Category: Triplet formation]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu Jul 3 13~~:18:~~41 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 21 21:02:31 2009''

OCA at 10:18, 3 July 2008

OCA — Thu, 03 Jul 2008 10:18:41 GMT

←Older revision		Revision as of 10:18, 3 July 2008
Line 1:		Line 1:
-	[[Image:431d.~~gif~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:431d.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_431d\| PDB=431d \| SCENE= }}		{{STRUCTURE_431d\| PDB=431d \| SCENE= }}

-	~~'''~~5'-D(GPGPCPCPAPAPTPTPGPG)-3'~~'''~~	+	===5'-D(GPGPCPCPAPAPTPTPGPG)-3'===


-	~~==Overview==~~	+	<!--
-	~~Despite the importance of hydration around DNA in the understanding of its conformation and interactions with other molecules in many biological processes~~, ~~only limited atomic resolution information is available. Crystal-engineering techniques~~, ~~which were originally developed~~ to ~~mimic DNA base triplets in a crystal lattice, also eliminate~~ the rotational disorder of oligonucleotides around their helical axis and thereby enhance the resolution of the structure analysis. We have determined the low-temperature crystal structure of the synthetic DNA decamer d(~~GGCCAATTGG)~~ at ~~atomic resolution (1~~. ~~15 A) using 17700 reflections and have characterized the highly organized hydration patterns in both grooves~~. ~~The narrow d(AATT~~) ~~minor groove is occupied by an 'extended hydration spine' alternately bridging base pairs and phosphate O1P atoms of opposite strands~~, ~~while a distinctive pattern of parallel water ribbons~~ is ~~observed in~~ the ~~major groove~~. ~~This analysis provides structural insight into the correlation found between narrow minor~~-~~groove width and occurrence of the B(I) conformation and can be used to design new minor~~-groove binders. By their location between adjacent helices, two fully hydrated magnesium ions further stabilize the crystal packing. The structure also provides details of the hydration and conformation of G.GC triple helices.	+	The line below this paragraph, {{ABSTRACT_PUBMED_10489444}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 10489444 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_10489444}}

	==About this Structure==		==About this Structure==
Line 28:		Line 32:
	[[Category: Extended hydration spine]]		[[Category: Extended hydration spine]]
	[[Category: Triplet formation]]		[[Category: Triplet formation]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun May~~ ~~4 22~~:17:25 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jul 3 13:18:41 2008''

OCA at 19:17, 4 May 2008

OCA — Sun, 04 May 2008 19:17:26 GMT

←Older revision		Revision as of 19:17, 4 May 2008
Line 1:		Line 1:
	[[Image:431d.gif\|left\|200px]]		[[Image:431d.gif\|left\|200px]]

-	{{Structure	+	<!--
-	\|PDB~~= 431d \|SIZE=350\|CAPTION= <~~scene ~~name='initialview01'>431d</scene>~~, ~~resolution 1~~.~~15Å~~	+	The line below this paragraph, containing "STRUCTURE_431d", creates the "Structure Box" on the page.
-	~~\|SITE=~~	+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	~~\|LIGAND= <scene name='pdbligand=DA:2'~~-~~DEOXYADENOSINE~~-5'-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5'-MONOPHOSPHATE'>DT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>	+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	\|~~ACTIVITY~~=	+	or leave the SCENE parameter empty for the default display.
-	\|~~GENE~~=	+	-->
-	~~\|DOMAIN=~~	+	{{STRUCTURE_431d\| PDB=431d \| SCENE= }}
-	~~\|RELATEDENTRY=~~	+
-	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=431d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=431d OCA], [http://www.ebi.ac.uk/pdbsum/431d PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=431d RCSB]</span>	+
-	}}	+

	'''5'-D(GPGPCPCPAPAPTPTPGPG)-3''''		'''5'-D(GPGPCPCPAPAPTPTPGPG)-3''''
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	==About this Structure==		==About this Structure==
-	~~431D is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=431D OCA].	+	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=431D OCA].

	==Reference==		==Reference==
	B-DNA at atomic resolution reveals extended hydration patterns., Vlieghe D, Turkenburg JP, Van Meervelt L, Acta Crystallogr D Biol Crystallogr. 1999 Sep;55(Pt 9):1495-502. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10489444 10489444]		B-DNA at atomic resolution reveals extended hydration patterns., Vlieghe D, Turkenburg JP, Van Meervelt L, Acta Crystallogr D Biol Crystallogr. 1999 Sep;55(Pt 9):1495-502. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10489444 10489444]
-	[[Category: Protein complex]]
	[[Category: Meervelt, L Van.]]		[[Category: Meervelt, L Van.]]
	[[Category: Turkenburg, J P.]]		[[Category: Turkenburg, J P.]]
	[[Category: Vlieghe, D.]]		[[Category: Vlieghe, D.]]
-	[[Category: ~~atomic~~ resolution]]	+	[[Category: Atomic resolution]]
-	[[Category: ~~deoxyribonucleic~~ acid]]	+	[[Category: Deoxyribonucleic acid]]
-	[[Category: ~~double~~ backbone conformation]]	+	[[Category: Double backbone conformation]]
-	[[Category: ~~extended~~ hydration spine]]	+	[[Category: Extended hydration spine]]
-	[[Category: ~~triplet~~ formation]]	+	[[Category: Triplet formation]]
-		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 22:17:25 2008''
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Mar 31 05~~:37:10 2008''	+

OCA at 02:37, 31 March 2008

OCA — Mon, 31 Mar 2008 02:37:11 GMT

←Older revision		Revision as of 02:37, 31 March 2008
Line 4:		Line 4:
	\|PDB= 431d \|SIZE=350\|CAPTION= <scene name='initialview01'>431d</scene>, resolution 1.15Å		\|PDB= 431d \|SIZE=350\|CAPTION= <scene name='initialview01'>431d</scene>, resolution 1.15Å
	\|SITE=		\|SITE=
-	\|LIGAND= <scene name='pdbligand=MG:MAGNESIUM ION'>MG</scene>	+	\|LIGAND= <scene name='pdbligand=DA:2'-DEOXYADENOSINE-5'-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5'-MONOPHOSPHATE'>DT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
	\|ACTIVITY=		\|ACTIVITY=
	\|GENE=		\|GENE=
		+	\|DOMAIN=
		+	\|RELATEDENTRY=
		+	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=431d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=431d OCA], [http://www.ebi.ac.uk/pdbsum/431d PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=431d RCSB]</span>
	}}		}}

Line 24:		Line 27:
	[[Category: Turkenburg, J P.]]		[[Category: Turkenburg, J P.]]
	[[Category: Vlieghe, D.]]		[[Category: Vlieghe, D.]]
-	[[Category: MG]]
	[[Category: atomic resolution]]		[[Category: atomic resolution]]
	[[Category: deoxyribonucleic acid]]		[[Category: deoxyribonucleic acid]]
Line 31:		Line 33:
	[[Category: triplet formation]]		[[Category: triplet formation]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu~~ Mar ~~20 19~~:08:11 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:37:10 2008''