4bg8 - Revision history

OCA at 07:12, 31 August 2022

OCA — Wed, 31 Aug 2022 07:12:38 GMT

←Older revision		Revision as of 07:12, 31 August 2022
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	==Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (monoclinic space group)==		==Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (monoclinic space group)==
-	<StructureSection load='4bg8' size='340' side='right' caption='[[4bg8]], [[Resolution\|resolution]] 1.96Å' scene=''>	+	<StructureSection load='4bg8' size='340' side='right'caption='[[4bg8]], [[Resolution\|resolution]] 1.96Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4bg8]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Metka Metka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BG8 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4BG8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4bg8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Metka Metka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BG8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BG8 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4bg9\|4bg9]], [[4bga\|4bga]], [[4bgb\|4bgb]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[4bg9\|4bg9]], [[4bga\|4bga]], [[4bgb\|4bgb]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4bg8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bg8 OCA], [~~http~~://pdbe.org/4bg8 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4bg8 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4bg8 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4bg8 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4bg8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bg8 OCA], [https://pdbe.org/4bg8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4bg8 RCSB], [https://www.ebi.ac.uk/pdbsum/4bg8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4bg8 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Metka]]		[[Category: Metka]]
	[[Category: Baumann, U]]		[[Category: Baumann, U]]

OCA at 08:06, 6 March 2019

OCA — Wed, 06 Mar 2019 08:06:33 GMT

←Older revision		Revision as of 08:06, 6 March 2019
Line 1:		Line 1:

	==Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (monoclinic space group)==		==Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (monoclinic space group)==
-	<StructureSection load='4bg8' size='340' side='right' caption='[[4bg8]], [[Resolution\|resolution]] 1.96Å' scene=''>	+	<StructureSection load='4bg8' size='340' side='right' caption='[[4bg8]], [[Resolution\|resolution]] 1.96Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4bg8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Metka Metka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BG8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BG8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4bg8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Metka Metka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BG8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BG8 FirstGlance]. <br>

OCA at 15:14, 4 August 2016

OCA — Thu, 04 Aug 2016 15:14:21 GMT

←Older revision		Revision as of 15:14, 4 August 2016
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		+
	==Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (monoclinic space group)==		==Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (monoclinic space group)==
	<StructureSection load='4bg8' size='340' side='right' caption='[[4bg8]], [[Resolution\|resolution]] 1.96Å' scene=''>		<StructureSection load='4bg8' size='340' side='right' caption='[[4bg8]], [[Resolution\|resolution]] 1.96Å' scene=''>
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	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4bg9\|4bg9]], [[4bga\|4bga]], [[4bgb\|4bgb]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4bg9\|4bg9]], [[4bga\|4bga]], [[4bgb\|4bgb]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4bg8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bg8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4bg8 RCSB], [http://www.ebi.ac.uk/pdbsum/4bg8 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4bg8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bg8 OCA], [http://pdbe.org/4bg8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4bg8 RCSB], [http://www.ebi.ac.uk/pdbsum/4bg8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4bg8 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4bg8" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 17:13, 21 December 2014

OCA — Sun, 21 Dec 2014 17:13:45 GMT

←Older revision		Revision as of 17:13, 21 December 2014
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-	~~{{STRUCTURE_4bg8\| PDB=4bg8 \| SCENE= }}~~	+	==Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (monoclinic space group)==
-	===Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (monoclinic space group)===	+	<StructureSection load='4bg8' size='340' side='right' caption='[[4bg8]], [[Resolution\|resolution]] 1.96Å' scene=''>
-	~~{{ABSTRACT_PUBMED_24311585}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4bg8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Metka Metka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BG8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BG8 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4bg9\|4bg9]], [[4bga\|4bga]], [[4bgb\|4bgb]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4bg8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bg8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4bg8 RCSB], [http://www.ebi.ac.uk/pdbsum/4bg8 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Murein recycling is a process in which microorganisms recover peptidoglycan-degradation products in order to utilize them in cell wall biosynthesis or basic metabolic pathways. Methanogens such as Methanopyrus kandleri contain pseudomurein, which differs from bacterial murein in its composition and branching. Here, four crystal structures of the putative sugar kinase MK0840 from M. kandleri in apo and nucleotide-bound states are reported. MK0840 shows high similarity to bacterial anhydro-N-acetylmuramic acid kinase, which is involved in murein recycling. The structure shares a common fold with panthothenate kinase and the 2-hydroxyglutaryl-CoA dehydratase component A, both of which are members of the ASKHA (acetate and sugar kinases/Hsc70/actin) superfamily of phosphotransferases. Local conformational changes in the nucleotide-binding site between the apo and holo forms are observed upon nucleotide binding. Further insight is given into domain movements and putative active-site residues are identified.

-	~~==About this Structure==~~	+	Structural characterization of the ribonuclease H-like type ASKHA superfamily kinase MK0840 from Methanopyrus kandleri.,Schacherl M, Waltersperger S, Baumann U Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2440-50. doi:, 10.1107/S0907444913022683. Epub 2013 Nov 19. PMID:24311585<ref>PMID:24311585</ref>
-	~~[[4bg8]] is a 2 chain structure with sequence~~ from ~~[http://en~~.~~wikipedia~~.~~org/wiki/Metka Metka]~~. ~~Full crystallographic information is available from [http~~:/~~/oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=4BG8 OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:024311585</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Metka]]		[[Category: Metka]]
-	[[Category: Baumann, U.]]	+	[[Category: Baumann, U]]
-	[[Category: Schacherl, M.]]	+	[[Category: Schacherl, M]]
-	[[Category: Waltersperger, S M.]]	+	[[Category: Waltersperger, S M]]
	[[Category: Askha superfamily]]		[[Category: Askha superfamily]]
	[[Category: Phosphotransfer]]		[[Category: Phosphotransfer]]
	[[Category: Pseudomurein]]		[[Category: Pseudomurein]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 07:54, 18 December 2013

OCA — Wed, 18 Dec 2013 07:54:05 GMT

←Older revision		Revision as of 07:54, 18 December 2013
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	{{STRUCTURE_4bg8\| PDB=4bg8 \| SCENE= }}		{{STRUCTURE_4bg8\| PDB=4bg8 \| SCENE= }}
	===Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (monoclinic space group)===		===Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (monoclinic space group)===
		+	{{ABSTRACT_PUBMED_24311585}}

	==About this Structure==		==About this Structure==
-	[[4bg8]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BG8 OCA].	+	[[4bg8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Metka Metka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BG8 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:024311585</ref><references group="xtra"/><references/>
		+	[[Category: Metka]]
	[[Category: Baumann, U.]]		[[Category: Baumann, U.]]
	[[Category: Schacherl, M.]]		[[Category: Schacherl, M.]]

OCA at 10:28, 27 November 2013

OCA — Wed, 27 Nov 2013 10:28:03 GMT

←Older revision		Revision as of 10:28, 27 November 2013
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-	~~'''Unreleased structure'''~~	+	{{STRUCTURE_4bg8\| PDB=4bg8 \| SCENE= }}
		+	===Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (monoclinic space group)===

-	~~The entry~~ 4bg8 is ~~ON HOLD until Paper Publication~~	+	==About this Structure==
-		+	[[4bg8]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BG8 OCA].
-	~~Authors~~: Schacherl, M., Waltersperger, S.M.~~, Baumann, U.~~	+	[[Category: Baumann, U.]]
-		+	[[Category: Schacherl, M.]]
-	~~Description~~: ~~Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (monoclinic space group)~~	+	[[Category: Waltersperger, S M.]]
		+	[[Category: Askha superfamily]]
		+	[[Category: Phosphotransfer]]
		+	[[Category: Pseudomurein]]
		+	[[Category: Transferase]]

OCA at 19:41, 17 April 2013

OCA — Wed, 17 Apr 2013 19:41:24 GMT

←Older revision		Revision as of 19:41, 17 April 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4bg8 is ON HOLD	+	The entry 4bg8 is ON HOLD until Paper Publication

	Authors: Schacherl, M., Waltersperger, S.M., Baumann, U.		Authors: Schacherl, M., Waltersperger, S.M., Baumann, U.

	Description: Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (monoclinic space group)		Description: Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (monoclinic space group)

OCA: Protected "4bg8" [edit=sysop:move=sysop]

OCA — Thu, 04 Apr 2013 00:38:06 GMT

Protected "4bg8" [edit=sysop:move=sysop]

←Older revision

Revision as of 00:38, 4 April 2013

OCA: New page: '''Unreleased structure''' The entry 4bg8 is ON HOLD Authors: Schacherl, M., Waltersperger, S.M., Baumann, U. Description: Apo form of a putative sugar kinase MK0840 from Methanopyrus ...

OCA — Thu, 04 Apr 2013 00:38:04 GMT

New page: '''Unreleased structure''' The entry 4bg8 is ON HOLD Authors: Schacherl, M., Waltersperger, S.M., Baumann, U. Description: Apo form of a putative sugar kinase MK0840 from Methanopyrus ...

New page

'''Unreleased structure'''

The entry 4bg8 is ON HOLD

Authors: Schacherl, M., Waltersperger, S.M., Baumann, U.

Description: Apo form of a putative sugar kinase MK0840 from Methanopyrus kandleri (monoclinic space group)