4bm1 - Revision history

OCA at 11:54, 20 December 2023

OCA — Wed, 20 Dec 2023 11:54:17 GMT

←Older revision		Revision as of 11:54, 20 December 2023
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	<StructureSection load='4bm1' size='340' side='right'caption='[[4bm1]], [[Resolution\|resolution]] 1.10Å' scene=''>		<StructureSection load='4bm1' size='340' side='right'caption='[[4bm1]], [[Resolution\|resolution]] 1.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4bm1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Oyster_mushroom Oyster mushroom~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BM1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BM1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4bm1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pleurotus_ostreatus Pleurotus ostreatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BM1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BM1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.098Å</td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[4blk\|4blk]], [[4bll\|4bll]], [[4bln\|4bln]], [[4blx\|4blx]], [[4bly\|4bly]], [[4blz\|4blz]], [[4bm0\|4bm0]], [[4bm2\|4bm2]], [[4bm3\|4bm3]], [[4bm4\|4bm4]]</div></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Manganese_peroxidase Manganese peroxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.13 1.11.1.13] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4bm1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bm1 OCA], [https://pdbe.org/4bm1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4bm1 RCSB], [https://www.ebi.ac.uk/pdbsum/4bm1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4bm1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4bm1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bm1 OCA], [https://pdbe.org/4bm1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4bm1 RCSB], [https://www.ebi.ac.uk/pdbsum/4bm1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4bm1 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/W5IDB6_PLEOS W5IDB6_PLEOS]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Manganese peroxidase]]~~	+	[[Category: Pleurotus ostreatus]]
-	~~[[Category: Oyster mushroom~~]]	+	[[Category: Medrano FJ]]
-	[[Category: Medrano~~, F J~~]]	+	[[Category: Romero A]]
-	[[Category: Romero, A]]	+
-	~~[[Category: Electron t lignin peroxidase]]~~	+
-	~~[[Category: Lignin degradation]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Protoporphyrin ix~~]]	+

OCA at 07:18, 31 August 2022

OCA — Wed, 31 Aug 2022 07:18:13 GMT

←Older revision		Revision as of 07:18, 31 August 2022
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	<StructureSection load='4bm1' size='340' side='right'caption='[[4bm1]], [[Resolution\|resolution]] 1.10Å' scene=''>		<StructureSection load='4bm1' size='340' side='right'caption='[[4bm1]], [[Resolution\|resolution]] 1.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4bm1]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Oyster_mushroom Oyster mushroom]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BM1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4BM1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4bm1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Oyster_mushroom Oyster mushroom]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BM1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BM1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4blk\|4blk]], [[4bll\|4bll]], [[4bln\|4bln]], [[4blx\|4blx]], [[4bly\|4bly]], [[4blz\|4blz]], [[4bm0\|4bm0]], [[4bm2\|4bm2]], [[4bm3\|4bm3]], [[4bm4\|4bm4]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[4blk\|4blk]], [[4bll\|4bll]], [[4bln\|4bln]], [[4blx\|4blx]], [[4bly\|4bly]], [[4blz\|4blz]], [[4bm0\|4bm0]], [[4bm2\|4bm2]], [[4bm3\|4bm3]], [[4bm4\|4bm4]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Manganese_peroxidase Manganese peroxidase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.13 1.11.1.13] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Manganese_peroxidase Manganese peroxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.13 1.11.1.13] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4bm1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bm1 OCA], [~~http~~://pdbe.org/4bm1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4bm1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4bm1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4bm1 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4bm1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bm1 OCA], [https://pdbe.org/4bm1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4bm1 RCSB], [https://www.ebi.ac.uk/pdbsum/4bm1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4bm1 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 13:14, 13 March 2019

OCA — Wed, 13 Mar 2019 13:14:56 GMT

←Older revision		Revision as of 13:14, 13 March 2019
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	==CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS - CRYSTAL FORM I==		==CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS - CRYSTAL FORM I==
-	<StructureSection load='4bm1' size='340' side='right' caption='[[4bm1]], [[Resolution\|resolution]] 1.10Å' scene=''>	+	<StructureSection load='4bm1' size='340' side='right'caption='[[4bm1]], [[Resolution\|resolution]] 1.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4bm1]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BM1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BM1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4bm1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Oyster_mushroom Oyster mushroom]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BM1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BM1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4blk\|4blk]], [[4bll\|4bll]], [[4bln\|4bln]], [[4blx\|4blx]], [[4bly\|4bly]], [[4blz\|4blz]], [[4bm0\|4bm0]], [[4bm2\|4bm2]], [[4bm3\|4bm3]], [[4bm4\|4bm4]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4blk\|4blk]], [[4bll\|4bll]], [[4bln\|4bln]], [[4blx\|4blx]], [[4bly\|4bly]], [[4blz\|4blz]], [[4bm0\|4bm0]], [[4bm2\|4bm2]], [[4bm3\|4bm3]], [[4bm4\|4bm4]]</td></tr>
Line 25:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Manganese peroxidase]]		[[Category: Manganese peroxidase]]
		+	[[Category: Oyster mushroom]]
	[[Category: Medrano, F J]]		[[Category: Medrano, F J]]
	[[Category: Romero, A]]		[[Category: Romero, A]]

OCA at 16:10, 25 January 2017

OCA — Wed, 25 Jan 2017 16:10:17 GMT

←Older revision		Revision as of 16:10, 25 January 2017
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	<StructureSection load='4bm1' size='340' side='right' caption='[[4bm1]], [[Resolution\|resolution]] 1.10Å' scene=''>		<StructureSection load='4bm1' size='340' side='right' caption='[[4bm1]], [[Resolution\|resolution]] 1.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4bm1]] is a 2 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/Oyster_mushroom Oyster mushroom]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BM1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BM1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4bm1]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BM1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BM1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4blk\|4blk]], [[4bll\|4bll]], [[4bln\|4bln]], [[4blx\|4blx]], [[4bly\|4bly]], [[4blz\|4blz]], [[4bm0\|4bm0]], [[4bm2\|4bm2]], [[4bm3\|4bm3]], [[4bm4\|4bm4]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4blk\|4blk]], [[4bll\|4bll]], [[4bln\|4bln]], [[4blx\|4blx]], [[4bly\|4bly]], [[4blz\|4blz]], [[4bm0\|4bm0]], [[4bm2\|4bm2]], [[4bm3\|4bm3]], [[4bm4\|4bm4]]</td></tr>
Line 26:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Manganese peroxidase]]		[[Category: Manganese peroxidase]]
-	[[Category: Oyster mushroom]]
	[[Category: Medrano, F J]]		[[Category: Medrano, F J]]
	[[Category: Romero, A]]		[[Category: Romero, A]]

OCA at 02:49, 11 December 2016

OCA — Sun, 11 Dec 2016 02:49:17 GMT

←Older revision		Revision as of 02:49, 11 December 2016
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS - CRYSTAL FORM I==		==CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS - CRYSTAL FORM I==
	<StructureSection load='4bm1' size='340' side='right' caption='[[4bm1]], [[Resolution\|resolution]] 1.10Å' scene=''>		<StructureSection load='4bm1' size='340' side='right' caption='[[4bm1]], [[Resolution\|resolution]] 1.10Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4blk\|4blk]], [[4bll\|4bll]], [[4bln\|4bln]], [[4blx\|4blx]], [[4bly\|4bly]], [[4blz\|4blz]], [[4bm0\|4bm0]], [[4bm2\|4bm2]], [[4bm3\|4bm3]], [[4bm4\|4bm4]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4blk\|4blk]], [[4bll\|4bll]], [[4bln\|4bln]], [[4blx\|4blx]], [[4bly\|4bly]], [[4blz\|4blz]], [[4bm0\|4bm0]], [[4bm2\|4bm2]], [[4bm3\|4bm3]], [[4bm4\|4bm4]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Manganese_peroxidase Manganese peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.13 1.11.1.13] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Manganese_peroxidase Manganese peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.13 1.11.1.13] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4bm1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bm1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4bm1 RCSB], [http://www.ebi.ac.uk/pdbsum/4bm1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4bm1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bm1 OCA], [http://pdbe.org/4bm1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4bm1 RCSB], [http://www.ebi.ac.uk/pdbsum/4bm1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4bm1 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4bm1" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 09:11, 15 February 2015

OCA — Sun, 15 Feb 2015 09:11:14 GMT

←Older revision		Revision as of 09:11, 15 February 2015
Line 1:		Line 1:
-	~~{{STRUCTURE_4bm1\| PDB=4bm1 \| SCENE= }}~~	+	==CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS - CRYSTAL FORM I==
-	===CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS - CRYSTAL FORM I===	+	<StructureSection load='4bm1' size='340' side='right' caption='[[4bm1]], [[Resolution\|resolution]] 1.10Å' scene=''>
-	~~{{ABSTRACT_PUBMED_24387130}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4bm1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Oyster_mushroom Oyster mushroom]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BM1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BM1 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4blk\|4blk]], [[4bll\|4bll]], [[4bln\|4bln]], [[4blx\|4blx]], [[4bly\|4bly]], [[4blz\|4blz]], [[4bm0\|4bm0]], [[4bm2\|4bm2]], [[4bm3\|4bm3]], [[4bm4\|4bm4]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Manganese_peroxidase Manganese peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.13 1.11.1.13] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4bm1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bm1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4bm1 RCSB], [http://www.ebi.ac.uk/pdbsum/4bm1 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	BACKGROUND: The genome of Pleurotus ostreatus, an important edible mushroom and a model ligninolytic organism of interest in lignocellulose biorefineries due to its ability to delignify agricultural wastes, was sequenced with the purpose of identifying and characterizing the enzymes responsible for lignin degradation. RESULTS: Heterologous expression of the class II peroxidase genes, followed by kinetic studies, enabled their functional classification. The resulting inventory revealed the absence of lignin peroxidases (LiPs) and the presence of three versatile peroxidases (VPs) and six manganese peroxidases (MnPs), the crystal structures of two of them (VP1 and MnP4) were solved at 1.0 to 1.1 A showing significant structural differences. Gene expansion supports the importance of both peroxidase types in the white-rot lifestyle of this fungus. Using a lignin model dimer and synthetic lignin, we showed that VP is able to degrade lignin. Moreover, the dual Mn-mediated and Mn-independent activity of P. ostreatus MnPs justifies their inclusion in a new peroxidase subfamily. The availability of the whole POD repertoire enabled investigation, at a biochemical level, of the existence of duplicated genes. Differences between isoenzymes are not limited to their kinetic constants. Surprising differences in their activity T50 and residual activity at both acidic and alkaline pH were observed. Directed mutagenesis and spectroscopic/structural information were combined to explain the catalytic and stability properties of the most interesting isoenzymes, and their evolutionary history was analyzed in the context of over 200 basidiomycete peroxidase sequences. CONCLUSIONS: The analysis of the P. ostreatus genome shows a lignin-degrading system where the role generally played by LiP has been assumed by VP. Moreover, it enabled the first characterization of the complete set of peroxidase isoenzymes in a basidiomycete, revealing strong differences in stability properties and providing enzymes of biotechnological interest.

-	~~==About this Structure==~~	+	Ligninolytic peroxidase genes in the oyster mushroom genome: heterologous expression, molecular structure, catalytic and stability properties, and lignin-degrading ability.,Fernandez-Fueyo E, Ruiz-Duenas FJ, Martinez MJ, Romero A, Hammel KE, Medrano FJ, Martinez AT Biotechnol Biofuels. 2014 Jan 3;7(1):2. PMID:24387130<ref>PMID:24387130</ref>
-	~~[[4bm1]] is a 2 chain~~ structure. ~~Full crystallographic information is available from [http~~:~~//oca~~.~~weizmann.ac.il~~/~~oca-bin/ocashort?id=4BM1 OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group~~=~~"xtra">PMID:024387130</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+
		+	==See Also==
		+	*[[Manganese peroxidase\|Manganese peroxidase]]
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Manganese peroxidase]]		[[Category: Manganese peroxidase]]
-	[[Category: Medrano, F J.]]	+	[[Category: Oyster mushroom]]
-	[[Category: Romero, A.]]	+	[[Category: Medrano, F J]]
		+	[[Category: Romero, A]]
	[[Category: Electron t lignin peroxidase]]		[[Category: Electron t lignin peroxidase]]
	[[Category: Lignin degradation]]		[[Category: Lignin degradation]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Protoporphyrin ix]]		[[Category: Protoporphyrin ix]]

OCA at 08:10, 15 January 2014

OCA — Wed, 15 Jan 2014 08:10:43 GMT

←Older revision		Revision as of 08:10, 15 January 2014
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{STRUCTURE_4bm1\| PDB=4bm1 \| SCENE= }}
		+	===CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS - CRYSTAL FORM I===
		+	{{ABSTRACT_PUBMED_24387130}}

-	~~The entry~~ 4bm1 is ~~ON HOLD until Paper Publication~~	+	==About this Structure==
		+	[[4bm1]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BM1 OCA].

-	~~Authors~~: ~~MEDRANO~~, F.J.~~, ROMERO~~, A.	+	==Reference==
-		+	<ref group="xtra">PMID:024387130</ref><references group="xtra"/><references/>
-	~~Description~~: ~~CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS -CRYSTAL FORM I~~	+	[[Category: Manganese peroxidase]]
		+	[[Category: Medrano, F J.]]
		+	[[Category: Romero, A.]]
		+	[[Category: Electron t lignin peroxidase]]
		+	[[Category: Lignin degradation]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Protoporphyrin ix]]

OCA at 10:46, 19 June 2013

OCA — Wed, 19 Jun 2013 10:46:50 GMT

←Older revision		Revision as of 10:46, 19 June 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4bm1 is ON HOLD	+	The entry 4bm1 is ON HOLD until Paper Publication

	Authors: MEDRANO, F.J., ROMERO, A.		Authors: MEDRANO, F.J., ROMERO, A.

	Description: CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS -CRYSTAL FORM I		Description: CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS -CRYSTAL FORM I

OCA: Protected "4bm1" [edit=sysop:move=sysop]

OCA — Thu, 16 May 2013 06:42:02 GMT

Protected "4bm1" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:42, 16 May 2013

OCA: New page: '''Unreleased structure''' The entry 4bm1 is ON HOLD Authors: MEDRANO, F.J., ROMERO, A. Description: CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS -CRYSTAL FORM ...

OCA — Thu, 16 May 2013 06:42:01 GMT

New page: '''Unreleased structure''' The entry 4bm1 is ON HOLD Authors: MEDRANO, F.J., ROMERO, A. Description: CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS -CRYSTAL FORM ...

New page

'''Unreleased structure'''

The entry 4bm1 is ON HOLD

Authors: MEDRANO, F.J., ROMERO, A.

Description: CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS -CRYSTAL FORM I