4d7z - Revision history

OCA at 09:12, 15 November 2023

OCA — Wed, 15 Nov 2023 09:12:03 GMT

←Older revision		Revision as of 09:12, 15 November 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4d7z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D7Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4D7Z FirstGlance]. <br>		<table><tr><td colspan='2'>[[4d7z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D7Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4D7Z FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4d7z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d7z OCA], [https://pdbe.org/4d7z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4d7z RCSB], [https://www.ebi.ac.uk/pdbsum/4d7z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4d7z ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4d7z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d7z OCA], [https://pdbe.org/4d7z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4d7z RCSB], [https://www.ebi.ac.uk/pdbsum/4d7z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4d7z ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/PAND_ECOLI PAND_ECOLI]] Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.<ref>PMID:6767707</ref>	+	[https://www.uniprot.org/uniprot/PAND_ECOLI PAND_ECOLI] Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.<ref>PMID:6767707</ref>

	==See Also==		==See Also==

OCA at 07:51, 14 September 2022

OCA — Wed, 14 Sep 2022 07:51:47 GMT

←Older revision		Revision as of 07:51, 14 September 2022
Line 3:		Line 3:
	<StructureSection load='4d7z' size='340' side='right'caption='[[4d7z]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='4d7z' size='340' side='right'caption='[[4d7z]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4d7z]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D7Z OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4D7Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4d7z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D7Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4D7Z FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=~~SCN~~:~~THIOCYANATE~~+~~ION~~'>~~SCN~~</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~PYR~~:~~PYRUVIC~~+~~ACID~~'>~~PYR~~</scene~~></td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4d7z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d7z OCA], [https://pdbe.org/4d7z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4d7z RCSB], [https://www.ebi.ac.uk/pdbsum/4d7z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4d7z ProSAT]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_1-decarboxylase Aspartate 1-decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.11 4.1.1.11] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4d7z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d7z OCA], [~~http~~://pdbe.org/4d7z PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4d7z RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4d7z PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4d7z ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PAND_ECOLI PAND_ECOLI]] Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.<ref>PMID:6767707</ref>	+	[[https://www.uniprot.org/uniprot/PAND_ECOLI PAND_ECOLI]] Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.<ref>PMID:6767707</ref>

	==See Also==		==See Also==
Line 18:		Line 16:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ coli ~~migula 1895]]~~	+	[[Category: Escherichia coli]]
-	~~[[Category: Aspartate 1-decarboxylase~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bravo~~, J P.K~~]]	+	[[Category: Bravo JPK]]
-	[[Category: Monteiro~~, D C.F~~]]	+	[[Category: Monteiro DCF]]
-	[[Category: Pearson~~, A R~~]]	+	[[Category: Pearson AR]]
-	[[Category: Webb~~, M E]]~~	+	[[Category: Webb ME]]
-	~~[[Category: Beta-alanine]]~~	+
-	~~[[Category: Lyase]]~~	+
-	~~[[Category: Pantothenate synthesis]]~~	+
-	~~[[Category: Protein derived cofactor]]~~	+
-	~~[[Category: Pyruvoyl cofactor~~]]	+

OCA at 07:34, 27 March 2019

OCA — Wed, 27 Mar 2019 07:34:58 GMT

←Older revision		Revision as of 07:34, 27 March 2019
Line 1:		Line 1:
		+
	==E. coli L-aspartate-alpha-decarboxylase mutant N72Q to a resolution of 1.9 Angstroms==		==E. coli L-aspartate-alpha-decarboxylase mutant N72Q to a resolution of 1.9 Angstroms==
-	<StructureSection load='4d7z' size='340' side='right' caption='[[4d7z]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='4d7z' size='340' side='right'caption='[[4d7z]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4d7z]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D7Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4D7Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4d7z]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D7Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4D7Z FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_1-decarboxylase Aspartate 1-decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.11 4.1.1.11] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_1-decarboxylase Aspartate 1-decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.11 4.1.1.11] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4d7z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d7z OCA], [http://pdbe.org/4d7z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4d7z RCSB], [http://www.ebi.ac.uk/pdbsum/4d7z PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4d7z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d7z OCA], [http://pdbe.org/4d7z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4d7z RCSB], [http://www.ebi.ac.uk/pdbsum/4d7z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4d7z ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/PAND_ECOLI PAND_ECOLI]] Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.<ref>PMID:6767707</ref>		[[http://www.uniprot.org/uniprot/PAND_ECOLI PAND_ECOLI]] Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.<ref>PMID:6767707</ref>
		+
		+	==See Also==
		+	*[[Aspartate decarboxylase 3D structures\|Aspartate decarboxylase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus coli migula 1895]]
	[[Category: Aspartate 1-decarboxylase]]		[[Category: Aspartate 1-decarboxylase]]
		+	[[Category: Large Structures]]
	[[Category: Bravo, J P.K]]		[[Category: Bravo, J P.K]]
	[[Category: Monteiro, D C.F]]		[[Category: Monteiro, D C.F]]

OCA at 20:18, 13 January 2016

OCA — Wed, 13 Jan 2016 20:18:54 GMT

←Older revision		Revision as of 20:18, 13 January 2016
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==E. coli L-aspartate-alpha-decarboxylase mutant N72Q to a resolution of 1.9 Angstroms==
-		+	<StructureSection load='4d7z' size='340' side='right' caption='[[4d7z]], [[Resolution\|resolution]] 1.90Å' scene=''>
-	~~The entry~~ 4d7z is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4d7z]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D7Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4D7Z FirstGlance]. <br>
-	~~Authors~~: ~~Bravo~~, J.P.K., ~~Monteiro, D~~.C.F., ~~Webb~~, M.E., ~~Pearson, A~~.R.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
-		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
-	~~Description~~: E. ~~coli L~~-aspartate~~-alpha-decarboxylase mutant N72Q~~ to ~~a resolution of 1~~.~~9 Angstroms~~	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_1-decarboxylase Aspartate 1-decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.11 4.1.1.11] </span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4d7z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d7z OCA], [http://pdbe.org/4d7z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4d7z RCSB], [http://www.ebi.ac.uk/pdbsum/4d7z PDBsum]</span></td></tr>
-	[[Category: ~~Pearson~~, A.R]]	+	</table>
-	[[Category: Monteiro, D.C.F]]	+	== Function ==
-	[[Category: ~~Bravo~~, ~~J.P.K~~]]	+	[[http://www.uniprot.org/uniprot/PAND_ECOLI PAND_ECOLI]] Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.<ref>PMID:6767707</ref>
-	[[Category: Webb, M.E]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Aspartate 1-decarboxylase]]
		+	[[Category: Bravo, J P.K]]
		+	[[Category: Monteiro, D C.F]]
		+	[[Category: Pearson, A R]]
		+	[[Category: Webb, M E]]
		+	[[Category: Beta-alanine]]
		+	[[Category: Lyase]]
		+	[[Category: Pantothenate synthesis]]
		+	[[Category: Protein derived cofactor]]
		+	[[Category: Pyruvoyl cofactor]]

OCA at 13:59, 24 December 2014

OCA — Wed, 24 Dec 2014 13:59:37 GMT

←Older revision		Revision as of 13:59, 24 December 2014
Line 6:		Line 6:

	Description: E. coli L-aspartate-alpha-decarboxylase mutant N72Q to a resolution of 1.9 Angstroms		Description: E. coli L-aspartate-alpha-decarboxylase mutant N72Q to a resolution of 1.9 Angstroms
		+	[[Category: Unreleased Structures]]
		+	[[Category: Pearson, A.R]]
		+	[[Category: Monteiro, D.C.F]]
		+	[[Category: Bravo, J.P.K]]
		+	[[Category: Webb, M.E]]

OCA: Protected "4d7z" [edit=sysop:move=sysop]

OCA — Wed, 10 Dec 2014 12:57:15 GMT

Protected "4d7z" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:57, 10 December 2014

OCA: New page: '''Unreleased structure''' The entry 4d7z is ON HOLD Authors: Bravo, J.P.K., Monteiro, D.C.F., Webb, M.E., Pearson, A.R. Description: E. coli L-aspartate-alpha-decarboxylase mutant N72...

OCA — Wed, 10 Dec 2014 12:57:13 GMT

New page: '''Unreleased structure''' The entry 4d7z is ON HOLD Authors: Bravo, J.P.K., Monteiro, D.C.F., Webb, M.E., Pearson, A.R. Description: E. coli L-aspartate-alpha-decarboxylase mutant N72...

New page

'''Unreleased structure'''

The entry 4d7z is ON HOLD

Authors: Bravo, J.P.K., Monteiro, D.C.F., Webb, M.E., Pearson, A.R.

Description: E. coli L-aspartate-alpha-decarboxylase mutant N72Q to a resolution of 1.9 Angstroms