4dj1 - Revision history

OCA at 08:20, 21 September 2022

OCA — Wed, 21 Sep 2022 08:20:38 GMT

←Older revision		Revision as of 08:20, 21 September 2022
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	<StructureSection load='4dj1' size='340' side='right'caption='[[4dj1]], [[Resolution\|resolution]] 1.98Å' scene=''>		<StructureSection load='4dj1' size='340' side='right'caption='[[4dj1]], [[Resolution\|resolution]] 1.98Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4dj1]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DJ1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4DJ1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4dj1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DJ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DJ1 FirstGlance]. <br>
-	</td></tr>~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3dzr\|3dzr]], [[4diy\|4diy]], [[4diz\|4diz]], [[4dj0\|4dj0]], [[4dj5\|4dj5]]</td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dj1 OCA], [https://pdbe.org/4dj1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dj1 RCSB], [https://www.ebi.ac.uk/pdbsum/4dj1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dj1 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4dj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dj1 OCA], [~~http~~://pdbe.org/4dj1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4dj1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4dj1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4dj1 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/THM1_THADA THM1_THADA]] Taste-modifying protein; intensely sweet-tasting. It is 100000 times sweeter than sucrose on a molar basis.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Thaumatococcus daniellii]]		[[Category: Thaumatococcus daniellii]]
-	[[Category: Belmonte, L]]	+	[[Category: Belmonte L]]
-	[[Category: Nicolini, C]]	+	[[Category: Nicolini C]]
-	[[Category: Pechkova, E]]	+	[[Category: Pechkova E]]
-	[[Category: Sivozhelezov, V]]	+	[[Category: Sivozhelezov V]]
-	~~[[Category: Langmuir blodgett]]~~	+
-	~~[[Category: Plant protein]]~~	+
-	~~[[Category: Thin film]]~~	+
-	~~[[Category: Water distribution~~]]	+

OCA at 07:28, 27 March 2019

OCA — Wed, 27 Mar 2019 07:28:00 GMT

←Older revision		Revision as of 07:28, 27 March 2019
Line 1:		Line 1:

	==Thaumatin I by Langmuir-Blodgett Hanging Drop Method at 1.98A resolution for Unique Water Distribution==		==Thaumatin I by Langmuir-Blodgett Hanging Drop Method at 1.98A resolution for Unique Water Distribution==
-	<StructureSection load='4dj1' size='340' side='right' caption='[[4dj1]], [[Resolution\|resolution]] 1.98Å' scene=''>	+	<StructureSection load='4dj1' size='340' side='right'caption='[[4dj1]], [[Resolution\|resolution]] 1.98Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4dj1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DJ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DJ1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4dj1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DJ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DJ1 FirstGlance]. <br>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Thaumatococcus daniellii]]		[[Category: Thaumatococcus daniellii]]
	[[Category: Belmonte, L]]		[[Category: Belmonte, L]]

OCA at 01:25, 5 August 2016

OCA — Fri, 05 Aug 2016 01:25:14 GMT

←Older revision		Revision as of 01:25, 5 August 2016
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-	[[Image:4dj1.png\|left\|200px]]

-	~~{{STRUCTURE_4dj1~~\| ~~PDB~~=4dj1 \| ~~SCENE~~= }}	+	==Thaumatin I by Langmuir-Blodgett Hanging Drop Method at 1.98A resolution for Unique Water Distribution==
		+	<StructureSection load='4dj1' size='340' side='right' caption='[[4dj1]], [[Resolution\|resolution]] 1.98Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4dj1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DJ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DJ1 FirstGlance]. <br>
		+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3dzr\|3dzr]], [[4diy\|4diy]], [[4diz\|4diz]], [[4dj0\|4dj0]], [[4dj5\|4dj5]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dj1 OCA], [http://pdbe.org/4dj1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4dj1 RCSB], [http://www.ebi.ac.uk/pdbsum/4dj1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4dj1 ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Langmuir-Blodgett films when used as nanotemplates for crystallization often leads to marked changes in protein stability and structure. Earlier we found that stability of proteins is also correlated with aqueous surroundings in the crystals. Here we study the direct relationships between presence of LB nanotemplates and unique patterns of water molecules surrounding the protein, for four model proteins for which 3D structures are available, and where crystallization conditions for each protein are the same except the presence of LB nanotemplate. Shape of frequency distribution of volumes occupied by water molecules were analyzed. They were found to be different between "classical" samples of different proteins, but surprisingly quite similar for LB samples. Volumes occupied by each water molecule as the function of the distance of the given molecule from the protein surface were studied. Introduction of LB film leads to appearance of water molecules close to protein surface but occupying large volumes. These findings confirm earlier experimental findings on the role of water molecules in determining protein stability and thereby pointing to water as a possible candidate for differences apparent in LB crystal stability against radiation.

-	~~===Thaumatin I by~~ Langmuir-Blodgett ~~Hanging Drop Method at 1~~.~~98A resolution for Unique Water Distribution===~~	+	Unique water distribution of Langmuir-Blodgett versus classical crystals.,Pechkova E, Sivozhelezov V, Belmonte L, Nicolini C J Struct Biol. 2012 Jun 15. PMID:22706161<ref>PMID:22706161</ref>

-	~~{{ABSTRACT_PUBMED_22706161}}~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~==About this Structure==~~	+	<div class="pdbe-citations 4dj1" style="background-color:#fffaf0;"></div>
-	~~[[4dj1]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca~~-~~bin~~/~~ocashort?id=4DJ1 OCA].~~	+	== References ==
-		+	<references/>
-	==~~Reference~~==	+	__TOC__
-	<~~ref group="xtra">PMID:022706161<~~/~~ref~~><~~references group="xtra"~~/>	+	</StructureSection>
	[[Category: Thaumatococcus daniellii]]		[[Category: Thaumatococcus daniellii]]
-	[[Category: Belmonte, L.]]	+	[[Category: Belmonte, L]]
-	[[Category: Nicolini, C.]]	+	[[Category: Nicolini, C]]
-	[[Category: Pechkova, E.]]	+	[[Category: Pechkova, E]]
-	[[Category: Sivozhelezov, V.]]	+	[[Category: Sivozhelezov, V]]
	[[Category: Langmuir blodgett]]		[[Category: Langmuir blodgett]]
	[[Category: Plant protein]]		[[Category: Plant protein]]
	[[Category: Thin film]]		[[Category: Thin film]]
	[[Category: Water distribution]]		[[Category: Water distribution]]

OCA at 09:35, 31 October 2012

OCA — Wed, 31 Oct 2012 09:35:03 GMT

←Older revision		Revision as of 09:35, 31 October 2012
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-	[[Image:4dj1.~~jpg~~\|left\|200px]]	+	[[Image:4dj1.png\|left\|200px]]

	{{STRUCTURE_4dj1\| PDB=4dj1 \| SCENE= }}		{{STRUCTURE_4dj1\| PDB=4dj1 \| SCENE= }}

OCA at 05:23, 18 July 2012

OCA — Wed, 18 Jul 2012 05:23:47 GMT

←Older revision		Revision as of 05:23, 18 July 2012
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-	~~'''Unreleased structure'''~~	+	[[Image:4dj1.jpg\|left\|200px]]

-	~~The entry~~ 4dj1 ~~is ON HOLD~~ ~~until Paper Publication~~	+	{{STRUCTURE_4dj1\| PDB=4dj1 \| SCENE= }}

-	~~Authors: Pechkova, E., Sivozhelezov, V., Belmonte, L., Nicolini, C~~.	+	===Thaumatin I by Langmuir-Blodgett Hanging Drop Method at 1.98A resolution for Unique Water Distribution===

-	~~Description~~: ~~Thaumatin I by Langmuir~~-~~Blodgett Hanging Drop Method at 1~~.~~98A resolution for Unique~~ Water ~~Distribution~~	+	{{ABSTRACT_PUBMED_22706161}}
		+
		+	==About this Structure==
		+	[[4dj1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thaumatococcus_daniellii Thaumatococcus daniellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DJ1 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:022706161</ref><references group="xtra"/>
		+	[[Category: Thaumatococcus daniellii]]
		+	[[Category: Belmonte, L.]]
		+	[[Category: Nicolini, C.]]
		+	[[Category: Pechkova, E.]]
		+	[[Category: Sivozhelezov, V.]]
		+	[[Category: Langmuir blodgett]]
		+	[[Category: Plant protein]]
		+	[[Category: Thin film]]
		+	[[Category: Water distribution]]

OCA at 07:26, 18 April 2012

OCA — Wed, 18 Apr 2012 07:26:13 GMT

←Older revision		Revision as of 07:26, 18 April 2012
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4dj1 is ON HOLD	+	The entry 4dj1 is ON HOLD until Paper Publication

	Authors: Pechkova, E., Sivozhelezov, V., Belmonte, L., Nicolini, C.		Authors: Pechkova, E., Sivozhelezov, V., Belmonte, L., Nicolini, C.

	Description: Thaumatin I by Langmuir-Blodgett Hanging Drop Method at 1.98A resolution for Unique Water Distribution		Description: Thaumatin I by Langmuir-Blodgett Hanging Drop Method at 1.98A resolution for Unique Water Distribution

OCA: Protected "4dj1" [edit=sysop:move=sysop]

OCA — Wed, 08 Feb 2012 06:13:48 GMT

Protected "4dj1" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:13, 8 February 2012

OCA: New page: '''Unreleased structure''' The entry 4dj1 is ON HOLD Authors: Pechkova, E., Sivozhelezov, V., Belmonte, L., Nicolini, C. Description: Thaumatin I by Langmuir-Blodgett Hanging Drop Meth...

OCA — Wed, 08 Feb 2012 06:13:47 GMT

New page: '''Unreleased structure''' The entry 4dj1 is ON HOLD Authors: Pechkova, E., Sivozhelezov, V., Belmonte, L., Nicolini, C. Description: Thaumatin I by Langmuir-Blodgett Hanging Drop Meth...

New page

'''Unreleased structure'''

The entry 4dj1 is ON HOLD

Authors: Pechkova, E., Sivozhelezov, V., Belmonte, L., Nicolini, C.

Description: Thaumatin I by Langmuir-Blodgett Hanging Drop Method at 1.98A resolution for Unique Water Distribution