4g10 - Revision history

OCA at 20:19, 19 October 2022

OCA — Wed, 19 Oct 2022 20:19:09 GMT

←Older revision		Revision as of 20:19, 19 October 2022
Line 1:		Line 1:

	==LigG from Sphingobium sp. SYK-6 is related to the glutathione transferase omega class==		==LigG from Sphingobium sp. SYK-6 is related to the glutathione transferase omega class==
-	<StructureSection load='4g10' size='340' side='right' caption='[[4g10]], [[Resolution\|resolution]] 1.20Å' scene=''>	+	<StructureSection load='4g10' size='340' side='right'caption='[[4g10]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4g10]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_devorans"_zimmermann_1890 "bacillus devorans" zimmermann 1890~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G10 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4G10 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4g10]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sphingomonas_paucimobilis Sphingomonas paucimobilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G10 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4G10 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=~~SO4~~:~~SULFATE+ION~~'>~~SO4~~</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene>~~</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4g10 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g10 OCA], [https://pdbe.org/4g10 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4g10 RCSB], [https://www.ebi.ac.uk/pdbsum/4g10 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4g10 ProSAT]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ligG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=13689 "Bacillus devorans" Zimmermann 1890])</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4g10 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g10 OCA], [~~http~~://pdbe.org/4g10 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4g10 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4g10 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4g10 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9WXJ9_SPHPI Q9WXJ9_SPHPI]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus devorans zimmermann 1890~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Carlin, G Mulliert~~]]	+	[[Category: Sphingomonas paucimobilis]]
-	[[Category: Didierjean, C]]	+	[[Category: Didierjean C]]
-	[[Category: Dumarcay, S]]	+	[[Category: Dumarcay S]]
-	[[Category: Favier, F]]	+	[[Category: Favier F]]
-	[[Category: Gelhaye, E]]	+	[[Category: Gelhaye E]]
-	[[Category: Masai, E]]	+	[[Category: Masai E]]
-	[[Category: Meux, E]]	+	[[Category: Meux E]]
-	[[Category: Morel, M]]	+	[[Category: Morel M]]
-	[[Category: ~~Prosper, P~~]]	+	[[Category: Mulliert Carlin G]]
-	[[Category: ~~Thioredoxin fold]]~~	+	[[Category: Prosper P]]
-	~~[[Category: Transferase~~]]	+

OCA at 20:05, 11 August 2016

OCA — Thu, 11 Aug 2016 20:05:14 GMT

←Older revision		Revision as of 20:05, 11 August 2016
Line 1:		Line 1:
		+
	==LigG from Sphingobium sp. SYK-6 is related to the glutathione transferase omega class==		==LigG from Sphingobium sp. SYK-6 is related to the glutathione transferase omega class==
	<StructureSection load='4g10' size='340' side='right' caption='[[4g10]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='4g10' size='340' side='right' caption='[[4g10]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4g10]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Sphingomonas_paucimobilis Sphingomonas paucimobilis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G10 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4G10 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4g10]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_devorans"_zimmermann_1890 "bacillus devorans" zimmermann 1890]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G10 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4G10 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ligG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=13689 ~~Sphingomonas paucimobilis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ligG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=13689 "Bacillus devorans" Zimmermann 1890])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4g10 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g10 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4g10 RCSB], [http://www.ebi.ac.uk/pdbsum/4g10 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4g10 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g10 OCA], [http://pdbe.org/4g10 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4g10 RCSB], [http://www.ebi.ac.uk/pdbsum/4g10 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4g10 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4g10" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Sphingomonas paucimobilis~~]]	+	[[Category: Bacillus devorans zimmermann 1890]]
	[[Category: Carlin, G Mulliert]]		[[Category: Carlin, G Mulliert]]
	[[Category: Didierjean, C]]		[[Category: Didierjean, C]]

OCA at 13:01, 4 January 2015

OCA — Sun, 04 Jan 2015 13:01:01 GMT

←Older revision		Revision as of 13:01, 4 January 2015
Line 1:		Line 1:
-	[[~~Image:~~4g10.~~png~~\|~~left~~\|~~200px~~]]	+	==LigG from Sphingobium sp. SYK-6 is related to the glutathione transferase omega class==
		+	<StructureSection load='4g10' size='340' side='right' caption='[[4g10]], [[Resolution\|resolution]] 1.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4g10]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sphingomonas_paucimobilis Sphingomonas paucimobilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G10 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4G10 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ligG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=13689 Sphingomonas paucimobilis])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4g10 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g10 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4g10 RCSB], [http://www.ebi.ac.uk/pdbsum/4g10 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	SpLigG is one of the three glutathione transferases (GSTs) involved in the process of lignin breakdown in the soil bacterium Sphingobium sp. SYK-6. Sequence comparisons showed that SpLigG and several proteobacteria homologues form an independent cluster within cysteine-containing GSTs. The relationship between SpLigG and other GSTs was investigated. The X-ray structure and biochemical properties of SpLigG indicate that this enzyme belongs to the omega class of glutathione transferases. However, the hydrophilic substrate binding site of SpLigG, together with its known ability to stereoselectively deglutathionylate the physiological substrate alpha-glutathionyl-beta-hydroxypropiovanillone, argues for broadening the definition of the omega class. STRUCTURED SUMMARY OF PROTEIN INTERACTIONS: SpLigG and SpLigGbind by X-ray crystallography (View interaction).

-	~~{{STRUCTURE_4g10\| PDB=4g10 \| SCENE= }}~~	+	Sphingobium sp. SYK-6 LigG involved in lignin degradation is structurally and biochemically related to the glutathione transferase omega class.,Meux E, Prosper P, Masai E, Mulliert G, Dumarcay S, Morel M, Didierjean C, Gelhaye E, Favier F FEBS Lett. 2012 Nov 16;586(22):3944-50. doi: 10.1016/j.febslet.2012.09.036. Epub , 2012 Oct 8. PMID:23058289<ref>PMID:23058289</ref>

-	~~===LigG from Sphingobium sp~~. ~~SYK-6 is related to the glutathione transferase omega class===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_23058289}}~~	+	== References ==
-		+	<references/>
-	==~~About this Structure~~==	+	__TOC__
-	~~[[4g10]] is a 1 chain structure with sequence from [http:~~//~~en.wikipedia.org/wiki/Sphingomonas_paucimobilis Sphingomonas paucimobilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G10 OCA].~~	+	</StructureSection>
	[[Category: Sphingomonas paucimobilis]]		[[Category: Sphingomonas paucimobilis]]
-	[[Category: Carlin, G Mulliert.]]	+	[[Category: Carlin, G Mulliert]]
-	[[Category: Didierjean, C.]]	+	[[Category: Didierjean, C]]
-	[[Category: Dumarcay, S.]]	+	[[Category: Dumarcay, S]]
-	[[Category: Favier, F.]]	+	[[Category: Favier, F]]
-	[[Category: Gelhaye, E.]]	+	[[Category: Gelhaye, E]]
-	[[Category: Masai, E.]]	+	[[Category: Masai, E]]
-	[[Category: Meux, E.]]	+	[[Category: Meux, E]]
-	[[Category: Morel, M.]]	+	[[Category: Morel, M]]
-	[[Category: Prosper, P.]]	+	[[Category: Prosper, P]]
	[[Category: Thioredoxin fold]]		[[Category: Thioredoxin fold]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 21:11, 12 December 2012

OCA — Wed, 12 Dec 2012 21:11:05 GMT

←Older revision		Revision as of 21:11, 12 December 2012
Line 1:		Line 1:
-	[[Image:4g10.~~jpg~~\|left\|200px]]	+	[[Image:4g10.png\|left\|200px]]

	{{STRUCTURE_4g10\| PDB=4g10 \| SCENE= }}		{{STRUCTURE_4g10\| PDB=4g10 \| SCENE= }}
Line 5:		Line 5:
	===LigG from Sphingobium sp. SYK-6 is related to the glutathione transferase omega class===		===LigG from Sphingobium sp. SYK-6 is related to the glutathione transferase omega class===

-	{{~~ABSTRACT_PUBMED_011726515~~}}	+	{{ABSTRACT_PUBMED_23058289}}

	==About this Structure==		==About this Structure==

OCA at 06:27, 3 October 2012

OCA — Wed, 03 Oct 2012 06:27:11 GMT

←Older revision		Revision as of 06:27, 3 October 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:4g10.jpg\|left\|200px]]

-	~~The entry~~ 4g10 ~~is ON HOLD~~ ~~until Paper Publication~~	+	{{STRUCTURE_4g10\| PDB=4g10 \| SCENE= }}

-	~~Authors: Meux, E., Prosper, P., Masai, E., Mulliert Carlin, G., Dumarcay, S., Morel, M., Didierjean, C., Gelhaye, E., Favier, F~~.	+	===LigG from Sphingobium sp. SYK-6 is related to the glutathione transferase omega class===

-	~~Description~~: ~~LigG~~ from ~~Sphingobium sp~~. ~~SYK~~-~~6 is related to the glutathione transferase omega class~~	+	{{ABSTRACT_PUBMED_011726515}}
		+
		+	==About this Structure==
		+	[[4g10]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sphingomonas_paucimobilis Sphingomonas paucimobilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G10 OCA].
		+	[[Category: Sphingomonas paucimobilis]]
		+	[[Category: Carlin, G Mulliert.]]
		+	[[Category: Didierjean, C.]]
		+	[[Category: Dumarcay, S.]]
		+	[[Category: Favier, F.]]
		+	[[Category: Gelhaye, E.]]
		+	[[Category: Masai, E.]]
		+	[[Category: Meux, E.]]
		+	[[Category: Morel, M.]]
		+	[[Category: Prosper, P.]]
		+	[[Category: Thioredoxin fold]]
		+	[[Category: Transferase]]

OCA at 05:27, 1 August 2012

OCA — Wed, 01 Aug 2012 05:27:48 GMT

←Older revision		Revision as of 05:27, 1 August 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4g10 is ON HOLD	+	The entry 4g10 is ON HOLD until Paper Publication

	Authors: Meux, E., Prosper, P., Masai, E., Mulliert Carlin, G., Dumarcay, S., Morel, M., Didierjean, C., Gelhaye, E., Favier, F.		Authors: Meux, E., Prosper, P., Masai, E., Mulliert Carlin, G., Dumarcay, S., Morel, M., Didierjean, C., Gelhaye, E., Favier, F.

	Description: LigG from Sphingobium sp. SYK-6 is related to the glutathione transferase omega class		Description: LigG from Sphingobium sp. SYK-6 is related to the glutathione transferase omega class

OCA at 06:50, 25 July 2012

OCA — Wed, 25 Jul 2012 06:50:04 GMT

←Older revision		Revision as of 06:50, 25 July 2012
Line 3:		Line 3:
	The entry 4g10 is ON HOLD		The entry 4g10 is ON HOLD

-	Authors: ~~MEUX~~, E., ~~PROSPER~~, P., ~~MASAI~~, E., ~~MULLIERT CARLIN~~, G., ~~DUMARCAY~~, S., ~~MOREL~~, M., ~~DIDIERJEAN~~, C., ~~GELHAYE~~, E., ~~FAVIER~~, F.	+	Authors: Meux, E., Prosper, P., Masai, E., Mulliert Carlin, G., Dumarcay, S., Morel, M., Didierjean, C., Gelhaye, E., Favier, F.

	Description: LigG from Sphingobium sp. SYK-6 is related to the glutathione transferase omega class		Description: LigG from Sphingobium sp. SYK-6 is related to the glutathione transferase omega class

OCA: Protected "4g10" [edit=sysop:move=sysop]

OCA — Wed, 18 Jul 2012 05:07:33 GMT

Protected "4g10" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:07, 18 July 2012

OCA: New page: '''Unreleased structure''' The entry 4g10 is ON HOLD Authors: MEUX, E., PROSPER, P., MASAI, E., MULLIERT CARLIN, G., DUMARCAY, S., MOREL, M., DIDIERJEAN, C., GELHAYE, E., FAVIER, F. De...

OCA — Wed, 18 Jul 2012 05:07:32 GMT

New page: '''Unreleased structure''' The entry 4g10 is ON HOLD Authors: MEUX, E., PROSPER, P., MASAI, E., MULLIERT CARLIN, G., DUMARCAY, S., MOREL, M., DIDIERJEAN, C., GELHAYE, E., FAVIER, F. De...

New page

'''Unreleased structure'''

The entry 4g10 is ON HOLD

Authors: MEUX, E., PROSPER, P., MASAI, E., MULLIERT CARLIN, G., DUMARCAY, S., MOREL, M., DIDIERJEAN, C., GELHAYE, E., FAVIER, F.

Description: LigG from Sphingobium sp. SYK-6 is related to the glutathione transferase omega class