4g4z - Revision history

OCA at 08:51, 20 March 2024

OCA — Wed, 20 Mar 2024 08:51:03 GMT

←Older revision		Revision as of 08:51, 20 March 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4g4z]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G4Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4G4Z FirstGlance]. <br>		<table><tr><td colspan='2'>[[4g4z]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G4Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4G4Z FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4g4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g4z OCA], [https://pdbe.org/4g4z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4g4z RCSB], [https://www.ebi.ac.uk/pdbsum/4g4z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4g4z ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4g4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g4z OCA], [https://pdbe.org/4g4z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4g4z RCSB], [https://www.ebi.ac.uk/pdbsum/4g4z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4g4z ProSAT]</span></td></tr>
	</table>		</table>

OCA at 20:25, 19 October 2022

OCA — Wed, 19 Oct 2022 20:25:18 GMT

←Older revision		Revision as of 20:25, 19 October 2022
Line 1:		Line 1:

	==Crystal structure of OmpA peptidoglycan-binding domain from Acinetobacter baumannii==		==Crystal structure of OmpA peptidoglycan-binding domain from Acinetobacter baumannii==
-	<StructureSection load='4g4z' size='340' side='right' caption='[[4g4z]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='4g4z' size='340' side='right'caption='[[4g4z]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4g4z]] is a 8 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Aciba Aciba~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G4Z OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4G4Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4g4z]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G4Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4G4Z FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4g4v\|4g4v]], [[4g4w\|4g4w]], [[4g4x\|4g4x]], [[4g4y\|4g4y]], [[4g88\|4g88]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4g4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g4z OCA], [https://pdbe.org/4g4z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4g4z RCSB], [https://www.ebi.ac.uk/pdbsum/4g4z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4g4z ProSAT]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">omp38, ompA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=470 ACIBA])~~</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4g4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g4z OCA], [~~http~~://pdbe.org/4g4z PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4g4z RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4g4z PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4g4z ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~OMP38_ACIBA OMP38_ACIBA~~]~~] Porin~~. Induces apoptosis in human ~~laryngeal epithelial HEp-2 cells~~ through ~~caspases~~-dependent and AIF-dependent pathways. Purified Omp38 enters ~~the cells~~ and localizes to the mitochondria, which leads to a release of proapoptotic molecules such as cytochrome c and AIF (apoptosis-inducing factor).<ref>PMID:16008580</ref> <ref>PMID:9928952</ref>	+	[https://www.uniprot.org/uniprot/OMP38_ACIB2 OMP38_ACIB2] Functions as a porin (PubMed:9928952). Induces apoptosis in human cell lines through caspase-dependent and AIF-dependent pathways. Purified Omp38 enters host cell and localizes to the mitochondria, which presumably leads to a release of proapoptotic molecules such as cytochrome c and AIF (apoptosis-inducing factor) (PubMed:16008580). Binds peptidoglycan, contributes to cell wall maintenance (Probable).<ref>PMID:16008580</ref> <ref>PMID:9928952</ref> <ref>PMID:16008580</ref> <ref>PMID:21965596</ref>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Aciba~~]]	+	[[Category: Acinetobacter baumannii]]
-	[[Category: ~~Kim, H Y~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Lee, W C~~]]	+	[[Category: Kim HY]]
-	[[Category: ~~Park, J S~~]]	+	[[Category: Lee WC]]
-	[[Category: ~~Song, J H~~]]	+	[[Category: Park JS]]
-	[[Category: ~~Ompa-like domain]]~~	+	[[Category: Song JH]]
-	~~[[Category: Peptide binding protein~~]]	+

OCA at 20:20, 4 August 2016

OCA — Thu, 04 Aug 2016 20:20:38 GMT

←Older revision		Revision as of 20:20, 4 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of OmpA peptidoglycan-binding domain from Acinetobacter baumannii==		==Crystal structure of OmpA peptidoglycan-binding domain from Acinetobacter baumannii==
	<StructureSection load='4g4z' size='340' side='right' caption='[[4g4z]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='4g4z' size='340' side='right' caption='[[4g4z]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4g4z]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Acinetobacter_baumannii Acinetobacter baumannii~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G4Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4G4Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4g4z]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Aciba Aciba]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G4Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4G4Z FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4g4v\|4g4v]], [[4g4w\|4g4w]], [[4g4x\|4g4x]], [[4g4y\|4g4y]], [[4g88\|4g88]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4g4v\|4g4v]], [[4g4w\|4g4w]], [[4g4x\|4g4x]], [[4g4y\|4g4y]], [[4g88\|4g88]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">omp38, ompA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=470 ~~Acinetobacter baumannii~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">omp38, ompA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=470 ACIBA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4g4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g4z OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4g4z RCSB], [http://www.ebi.ac.uk/pdbsum/4g4z PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4g4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g4z OCA], [http://pdbe.org/4g4z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4g4z RCSB], [http://www.ebi.ac.uk/pdbsum/4g4z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4g4z ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Acinetobacter baumannii~~]]	+	[[Category: Aciba]]
	[[Category: Kim, H Y]]		[[Category: Kim, H Y]]
	[[Category: Lee, W C]]		[[Category: Lee, W C]]

OCA at 19:16, 24 December 2014

OCA — Wed, 24 Dec 2014 19:16:20 GMT

←Older revision		Revision as of 19:16, 24 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4g4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g4z OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4g4z RCSB], [http://www.ebi.ac.uk/pdbsum/4g4z PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4g4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g4z OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4g4z RCSB], [http://www.ebi.ac.uk/pdbsum/4g4z PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/OMP38_ACIBA OMP38_ACIBA]] Porin. Induces apoptosis in human laryngeal epithelial HEp-2 cells through caspases-dependent and AIF-dependent pathways. Purified Omp38 enters the cells and localizes to the mitochondria, which leads to a release of proapoptotic molecules such as cytochrome c and AIF (apoptosis-inducing factor).<ref>PMID:16008580</ref> <ref>PMID:9928952</ref>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 11:04, 21 December 2014

OCA — Sun, 21 Dec 2014 11:04:56 GMT

←Older revision		Revision as of 11:04, 21 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_4g4z\| PDB=4g4z \| SCENE= }}~~	+	==Crystal structure of OmpA peptidoglycan-binding domain from Acinetobacter baumannii==
-	===Crystal structure of OmpA peptidoglycan-binding domain from Acinetobacter baumannii===	+	<StructureSection load='4g4z' size='340' side='right' caption='[[4g4z]], [[Resolution\|resolution]] 1.80Å' scene=''>
-		+	== Structural highlights ==
-	==~~Function~~==	+	<table><tr><td colspan='2'>[[4g4z]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G4Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4G4Z FirstGlance]. <br>
-	[[~~http://www.uniprot.org/uniprot/OMP38_ACIBA OMP38_ACIBA~~]] ~~Porin. Induces apoptosis in human laryngeal epithelial HEp-2 cells through caspases-dependent and AIF-dependent pathways. Purified Omp38 enters the cells and localizes to the mitochondria~~, ~~which leads to a release of proapoptotic molecules such as cytochrome c and AIF (apoptosis-inducing factor)~~.~~<ref~~>~~PMID:16008580</ref> <ref>PMID:9928952</ref>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4g4v\|4g4v]], [[4g4w\|4g4w]], [[4g4x\|4g4x]], [[4g4y\|4g4y]], [[4g88\|4g88]]</td></tr>
-	==~~About this Structure~~==	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">omp38, ompA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=470 Acinetobacter baumannii])</td></tr>
-	[[4g4z]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G4Z OCA].	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4g4z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g4z OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4g4z RCSB], [http://www.ebi.ac.uk/pdbsum/4g4z PDBsum]</span></td></tr>
-		+	</table>
-	==~~Reference~~==	+	__TOC__
-	<~~references group~~="~~xtra~~"/><~~references~~/>	+	</StructureSection>
	[[Category: Acinetobacter baumannii]]		[[Category: Acinetobacter baumannii]]
-	[[Category: Kim, H Y.]]	+	[[Category: Kim, H Y]]
-	[[Category: Lee, W C.]]	+	[[Category: Lee, W C]]
-	[[Category: Park, J S.]]	+	[[Category: Park, J S]]
-	[[Category: Song, J H.]]	+	[[Category: Song, J H]]
	[[Category: Ompa-like domain]]		[[Category: Ompa-like domain]]
	[[Category: Peptide binding protein]]		[[Category: Peptide binding protein]]

OCA at 13:03, 24 July 2013

OCA — Wed, 24 Jul 2013 13:03:15 GMT

←Older revision		Revision as of 13:03, 24 July 2013
Line 1:		Line 1:
-	~~'''Unreleased~~ structure~~'''~~	+	{{STRUCTURE_4g4z\| PDB=4g4z \| SCENE= }}
		+	===Crystal structure of OmpA peptidoglycan-binding domain from Acinetobacter baumannii===

-	~~The entry 4g4z is ON HOLD~~ ~~until Paper Publication~~	+	==Function==
		+	[[http://www.uniprot.org/uniprot/OMP38_ACIBA OMP38_ACIBA]] Porin. Induces apoptosis in human laryngeal epithelial HEp-2 cells through caspases-dependent and AIF-dependent pathways. Purified Omp38 enters the cells and localizes to the mitochondria, which leads to a release of proapoptotic molecules such as cytochrome c and AIF (apoptosis-inducing factor).<ref>PMID:16008580</ref> <ref>PMID:9928952</ref>

-	~~Authors~~: ~~Lee, W~~.C.~~, Song, J~~.~~H., Park, J~~.S.~~, Kim, H~~.Y.	+	==About this Structure==
		+	[[4g4z]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G4Z OCA].

-	~~Description~~: ~~Crystal structure of OmpA peptidoglycan-binding domain from~~ Acinetobacter baumannii	+	==Reference==
		+	<references group="xtra"/><references/>
		+	[[Category: Acinetobacter baumannii]]
		+	[[Category: Kim, H Y.]]
		+	[[Category: Lee, W C.]]
		+	[[Category: Park, J S.]]
		+	[[Category: Song, J H.]]
		+	[[Category: Ompa-like domain]]
		+	[[Category: Peptide binding protein]]

OCA at 08:59, 21 November 2012

OCA — Wed, 21 Nov 2012 08:59:33 GMT

←Older revision		Revision as of 08:59, 21 November 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4g4z is ON HOLD	+	The entry 4g4z is ON HOLD until Paper Publication

	Authors: Lee, W.C., Song, J.H., Park, J.S., Kim, H.Y.		Authors: Lee, W.C., Song, J.H., Park, J.S., Kim, H.Y.

	Description: Crystal structure of OmpA peptidoglycan-binding domain from Acinetobacter baumannii		Description: Crystal structure of OmpA peptidoglycan-binding domain from Acinetobacter baumannii

OCA: Protected "4g4z" [edit=sysop:move=sysop]

OCA — Wed, 25 Jul 2012 06:52:36 GMT

Protected "4g4z" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:52, 25 July 2012

OCA: New page: '''Unreleased structure''' The entry 4g4z is ON HOLD Authors: Lee, W.C., Song, J.H., Park, J.S., Kim, H.Y. Description: Crystal structure of OmpA peptidoglycan-binding domain from Acin...

OCA — Wed, 25 Jul 2012 06:52:35 GMT

New page: '''Unreleased structure''' The entry 4g4z is ON HOLD Authors: Lee, W.C., Song, J.H., Park, J.S., Kim, H.Y. Description: Crystal structure of OmpA peptidoglycan-binding domain from Acin...

New page

'''Unreleased structure'''

The entry 4g4z is ON HOLD

Authors: Lee, W.C., Song, J.H., Park, J.S., Kim, H.Y.

Description: Crystal structure of OmpA peptidoglycan-binding domain from Acinetobacter baumannii