4gol - Revision history

OCA at 11:33, 1 March 2024

OCA — Fri, 01 Mar 2024 11:33:18 GMT

←Older revision		Revision as of 11:33, 1 March 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4gol]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GOL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GOL FirstGlance]. <br>		<table><tr><td colspan='2'>[[4gol]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GOL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GOL FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SA8:S-5-AZAMETHIONINE-5-DEOXYADENOSINE'>SA8</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.57Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SA8:S-5-AZAMETHIONINE-5-DEOXYADENOSINE'>SA8</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4gol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gol OCA], [https://pdbe.org/4gol PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4gol RCSB], [https://www.ebi.ac.uk/pdbsum/4gol PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4gol ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4gol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gol OCA], [https://pdbe.org/4gol PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4gol RCSB], [https://www.ebi.ac.uk/pdbsum/4gol PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4gol ProSAT]</span></td></tr>
	</table>		</table>

OCA at 07:08, 26 October 2022

OCA — Wed, 26 Oct 2022 07:08:20 GMT

←Older revision		Revision as of 07:08, 26 October 2022
Line 1:		Line 1:

	==Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM==		==Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM==
-	<StructureSection load='4gol' size='340' side='right' caption='[[4gol]], [[Resolution\|resolution]] 2.57Å' scene=''>	+	<StructureSection load='4gol' size='340' side='right'caption='[[4gol]], [[Resolution\|resolution]] 2.57Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4gol]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Ecoli Ecoli~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GOL OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4GOL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4gol]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GOL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GOL FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SA8:S-5-AZAMETHIONINE-5-DEOXYADENOSINE'>SA8</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SA8:S-5-AZAMETHIONINE-5-DEOXYADENOSINE'>SA8</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4gbe\|4gbe]], [[4gom\|4gom]], [[4gon\|4gon]], [[4goo\|4goo]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4gol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gol OCA], [https://pdbe.org/4gol PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4gol RCSB], [https://www.ebi.ac.uk/pdbsum/4gol PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4gol ProSAT]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">b3387, dam, JW3350 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Site-specific_DNA-methyltransferase_(adenine-specific) Site-specific DNA-methyltransferase (adenine-specific)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.72 2.1.1.72] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4gol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gol OCA], [~~http~~://pdbe.org/4gol PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4gol RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4gol PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4gol ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/DMA_ECOLI DMA_ECOLI]] Methylates DNA within the sequence GATC and protects the DNA from cleavage by the restriction endonuclease MboI. Although it shares sequence specificity with a number of type II restriction endonucleases and methylases, it is thought to act in postreplication mismatch repair rather than as a part of a restriction modification system. May also play a role in DNA replication.	+	[https://www.uniprot.org/uniprot/DMA_ECOLI DMA_ECOLI] Methylates DNA within the sequence GATC and protects the DNA from cleavage by the restriction endonuclease MboI. Although it shares sequence specificity with a number of type II restriction endonucleases and methylases, it is thought to act in postreplication mismatch repair rather than as a part of a restriction modification system. May also play a role in DNA replication.

	==See Also==		==See Also==
	*[[DNA adenine methylase\|DNA adenine methylase]]		*[[DNA adenine methylase\|DNA adenine methylase]]
		+	*[[DNA methyltransferase 3D structures\|DNA methyltransferase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ecoli~~]]	+	[[Category: Escherichia coli K-12]]
-	[[Category: ~~Harmer, J E~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Roach, P L~~]]	+	[[Category: Harmer JE]]
-	[[Category: ~~Methylation]]~~	+	[[Category: Roach PL]]
-	~~[[Category: Transferase~~]]	+

OCA at 09:45, 5 August 2016

OCA — Fri, 05 Aug 2016 09:45:00 GMT

←Older revision		Revision as of 09:45, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM==		==Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM==
	<StructureSection load='4gol' size='340' side='right' caption='[[4gol]], [[Resolution\|resolution]] 2.57Å' scene=''>		<StructureSection load='4gol' size='340' side='right' caption='[[4gol]], [[Resolution\|resolution]] 2.57Å' scene=''>
Line 7:		Line 8:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">b3387, dam, JW3350 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">b3387, dam, JW3350 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Site-specific_DNA-methyltransferase_(adenine-specific) Site-specific DNA-methyltransferase (adenine-specific)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.72 2.1.1.72] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Site-specific_DNA-methyltransferase_(adenine-specific) Site-specific DNA-methyltransferase (adenine-specific)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.72 2.1.1.72] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4gol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gol OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4gol RCSB], [http://www.ebi.ac.uk/pdbsum/4gol PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4gol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gol OCA], [http://pdbe.org/4gol PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4gol RCSB], [http://www.ebi.ac.uk/pdbsum/4gol PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4gol ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/DMA_ECOLI DMA_ECOLI]] Methylates DNA within the sequence GATC and protects the DNA from cleavage by the restriction endonuclease MboI. Although it shares sequence specificity with a number of type II restriction endonucleases and methylases, it is thought to act in postreplication mismatch repair rather than as a part of a restriction modification system. May also play a role in DNA replication.		[[http://www.uniprot.org/uniprot/DMA_ECOLI DMA_ECOLI]] Methylates DNA within the sequence GATC and protects the DNA from cleavage by the restriction endonuclease MboI. Although it shares sequence specificity with a number of type II restriction endonucleases and methylases, it is thought to act in postreplication mismatch repair rather than as a part of a restriction modification system. May also play a role in DNA replication.
		+
		+	==See Also==
		+	*[[DNA adenine methylase\|DNA adenine methylase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 01:17, 25 December 2014

OCA — Thu, 25 Dec 2014 01:17:12 GMT

←Older revision		Revision as of 01:17, 25 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_4gol\| PDB=4gol \| SCENE= }}~~	+	==Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM==
-	===Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM===	+	<StructureSection load='4gol' size='340' side='right' caption='[[4gol]], [[Resolution\|resolution]] 2.57Å' scene=''>
-		+	== Structural highlights ==
-	==Function==	+	<table><tr><td colspan='2'>[[4gol]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GOL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4GOL FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SA8:S-5-AZAMETHIONINE-5-DEOXYADENOSINE'>SA8</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4gbe\|4gbe]], [[4gom\|4gom]], [[4gon\|4gon]], [[4goo\|4goo]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">b3387, dam, JW3350 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Site-specific_DNA-methyltransferase_(adenine-specific) Site-specific DNA-methyltransferase (adenine-specific)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.72 2.1.1.72] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4gol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gol OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4gol RCSB], [http://www.ebi.ac.uk/pdbsum/4gol PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
	[[http://www.uniprot.org/uniprot/DMA_ECOLI DMA_ECOLI]] Methylates DNA within the sequence GATC and protects the DNA from cleavage by the restriction endonuclease MboI. Although it shares sequence specificity with a number of type II restriction endonucleases and methylases, it is thought to act in postreplication mismatch repair rather than as a part of a restriction modification system. May also play a role in DNA replication.		[[http://www.uniprot.org/uniprot/DMA_ECOLI DMA_ECOLI]] Methylates DNA within the sequence GATC and protects the DNA from cleavage by the restriction endonuclease MboI. Although it shares sequence specificity with a number of type II restriction endonucleases and methylases, it is thought to act in postreplication mismatch repair rather than as a part of a restriction modification system. May also play a role in DNA replication.
-		+	__TOC__
-	~~==About this Structure==~~	+	</StructureSection>
-	[[~~4gol~~]] ~~is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GOL OCA].~~	+	[[Category: Ecoli]]
-	[[Category: Harmer, J E.]]	+	[[Category: Harmer, J E]]
-	[[Category: Roach, P L.]]	+	[[Category: Roach, P L]]
	[[Category: Methylation]]		[[Category: Methylation]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 18:19, 3 March 2014

OCA — Mon, 03 Mar 2014 18:19:40 GMT

←Older revision		Revision as of 18:19, 3 March 2014
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{STRUCTURE_4gol\| PDB=4gol \| SCENE= }}
		+	===Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM===

-	~~The entry 4gol~~ is ~~ON HOLD until Paper Publication~~	+	==Function==
		+	[[http://www.uniprot.org/uniprot/DMA_ECOLI DMA_ECOLI]] Methylates DNA within the sequence GATC and protects the DNA from cleavage by the restriction endonuclease MboI. Although it shares sequence specificity with a number of type II restriction endonucleases and methylases, it is thought to act in postreplication mismatch repair rather than as a part of a restriction modification system. May also play a role in DNA replication.

-	~~Authors~~: Harmer, J.E., Roach, P.L.	+	==About this Structure==
-		+	[[4gol]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GOL OCA].
-	~~Description~~: ~~Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM~~	+	[[Category: Harmer, J E.]]
		+	[[Category: Roach, P L.]]
		+	[[Category: Methylation]]
		+	[[Category: Transferase]]

OCA at 15:49, 19 February 2014

OCA — Wed, 19 Feb 2014 15:49:38 GMT

←Older revision		Revision as of 15:49, 19 February 2014
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4gol is ON HOLD until ~~Feb 19 2015~~	+	The entry 4gol is ON HOLD until Paper Publication

	Authors: Harmer, J.E., Roach, P.L.		Authors: Harmer, J.E., Roach, P.L.

	Description: Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM		Description: Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM

OCA at 14:48, 10 July 2013

OCA — Wed, 10 Jul 2013 14:48:35 GMT

←Older revision		Revision as of 14:48, 10 July 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4gol is ON HOLD until ~~Paper Publication~~	+	The entry 4gol is ON HOLD until Feb 19 2015

	Authors: Harmer, J.E., Roach, P.L.		Authors: Harmer, J.E., Roach, P.L.

	Description: Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM		Description: Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM

OCA at 06:52, 10 October 2012

OCA — Wed, 10 Oct 2012 06:52:57 GMT

←Older revision		Revision as of 06:52, 10 October 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4gol is ON HOLD	+	The entry 4gol is ON HOLD until Paper Publication

	Authors: Harmer, J.E., Roach, P.L.		Authors: Harmer, J.E., Roach, P.L.

	Description: Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM		Description: Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM

OCA: Protected "4gol" [edit=sysop:move=sysop]

OCA — Wed, 29 Aug 2012 04:49:00 GMT

Protected "4gol" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:49, 29 August 2012

OCA: New page: '''Unreleased structure''' The entry 4gol is ON HOLD Authors: Harmer, J.E., Roach, P.L. Description: Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylat...

OCA — Wed, 29 Aug 2012 04:48:59 GMT

New page: '''Unreleased structure''' The entry 4gol is ON HOLD Authors: Harmer, J.E., Roach, P.L. Description: Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylat...

New page

'''Unreleased structure'''

The entry 4gol is ON HOLD

Authors: Harmer, J.E., Roach, P.L.

Description: Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM