4h0n - Revision history

OCA at 16:01, 14 March 2024

OCA — Thu, 14 Mar 2024 16:01:20 GMT

←Older revision		Revision as of 16:01, 14 March 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4h0n]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H0N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4H0N FirstGlance]. <br>		<table><tr><td colspan='2'>[[4h0n]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H0N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4H0N FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.712Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4h0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h0n OCA], [https://pdbe.org/4h0n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4h0n RCSB], [https://www.ebi.ac.uk/pdbsum/4h0n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4h0n ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4h0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h0n OCA], [https://pdbe.org/4h0n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4h0n RCSB], [https://www.ebi.ac.uk/pdbsum/4h0n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4h0n ProSAT]</span></td></tr>
	</table>		</table>

OCA at 07:51, 3 November 2022

OCA — Thu, 03 Nov 2022 07:51:58 GMT

←Older revision		Revision as of 07:51, 3 November 2022
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	==Crystal structure of Spodoptera frugiperda DNMT2 E260A/E261A/K263A mutant==		==Crystal structure of Spodoptera frugiperda DNMT2 E260A/E261A/K263A mutant==
-	<StructureSection load='4h0n' size='340' side='right' caption='[[4h0n]], [[Resolution\|resolution]] 2.71Å' scene=''>	+	<StructureSection load='4h0n' size='340' side='right'caption='[[4h0n]], [[Resolution\|resolution]] 2.71Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4h0n]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Fall_armyworm Fall armyworm~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H0N OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4H0N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4h0n]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H0N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4H0N FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DNMT2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7108 Fall armyworm])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4h0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h0n OCA], [https://pdbe.org/4h0n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4h0n RCSB], [https://www.ebi.ac.uk/pdbsum/4h0n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4h0n ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4h0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h0n OCA], [~~http~~://pdbe.org/4h0n PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4h0n RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4h0n PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4h0n ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/TRDMT_SPOFR TRDMT_SPOFR] Specifically methylates cytosine 38 in the anticodon loop of tRNA(Asp) (By similarity). Also has DNA (cytosine-5)-methyltransferase activity (PubMed:23103599). Shows affinity for both tRNA(Asp) and DNA substrates (PubMed:23103599).[UniProtKB:O14717]<ref>PMID:23103599</ref>

	==See Also==		==See Also==
-	*[[DNA methyltransferase\|DNA methyltransferase]]	+	*[[DNA methyltransferase 3D structures\|DNA methyltransferase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Fall armyworm~~]]	+	[[Category: Large Structures]]
-	[[Category: Ding, J]]	+	[[Category: Spodoptera frugiperda]]
-	[[Category: Du, J]]	+	[[Category: Ding J]]
-	[[Category: Li, S]]	+	[[Category: Du J]]
-	[[Category: Yang, H]]	+	[[Category: Li S]]
-	[[Category: Yin, J]]	+	[[Category: Yang H]]
-	[[Category: Zhong, J]]	+	[[Category: Yin J]]
-	~~[[Category: Sah binding]]~~	+	[[Category: Zhong J]]
-	~~[[Category: Transferase~~]]	+

OCA at 15:38, 11 August 2016

OCA — Thu, 11 Aug 2016 15:38:10 GMT

←Older revision		Revision as of 15:38, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of Spodoptera frugiperda DNMT2 E260A/E261A/K263A mutant==		==Crystal structure of Spodoptera frugiperda DNMT2 E260A/E261A/K263A mutant==
	<StructureSection load='4h0n' size='340' side='right' caption='[[4h0n]], [[Resolution\|resolution]] 2.71Å' scene=''>		<StructureSection load='4h0n' size='340' side='right' caption='[[4h0n]], [[Resolution\|resolution]] 2.71Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4h0n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Spodoptera_frugiperda Spodoptera frugiperda~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H0N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4H0N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4h0n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Fall_armyworm Fall armyworm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H0N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4H0N FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DNMT2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7108 ~~Spodoptera frugiperda~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DNMT2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7108 Fall armyworm])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4h0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h0n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4h0n RCSB], [http://www.ebi.ac.uk/pdbsum/4h0n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4h0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h0n OCA], [http://pdbe.org/4h0n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4h0n RCSB], [http://www.ebi.ac.uk/pdbsum/4h0n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4h0n ProSAT]</span></td></tr>
	</table>		</table>

Line 12:		Line 13:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Spodoptera frugiperda~~]]	+	[[Category: Fall armyworm]]
	[[Category: Ding, J]]		[[Category: Ding, J]]
	[[Category: Du, J]]		[[Category: Du, J]]

OCA at 14:14, 4 January 2015

OCA — Sun, 04 Jan 2015 14:14:58 GMT

←Older revision		Revision as of 14:14, 4 January 2015
Line 1:		Line 1:
-	~~[[Image:4h0n.png\|left\|200px]]~~	+	==Crystal structure of Spodoptera frugiperda DNMT2 E260A/E261A/K263A mutant==
-		+	<StructureSection load='4h0n' size='340' side='right' caption='[[4h0n]], [[Resolution\|resolution]] 2.71Å' scene=''>
-	~~{{STRUCTURE_4h0n\| PDB=4h0n \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4h0n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H0N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4H0N FirstGlance]. <br>
-	===Crystal structure of Spodoptera frugiperda DNMT2 E260A/E261A/K263A mutant===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DNMT2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7108 Spodoptera frugiperda])</td></tr>
-		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4h0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h0n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4h0n RCSB], [http://www.ebi.ac.uk/pdbsum/4h0n PDBsum]</span></td></tr>
-	==~~About this Structure~~==	+	</table>
-	[[4h0n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H0N OCA].	+

	==See Also==		==See Also==
	*[[DNA methyltransferase\|DNA methyltransferase]]		*[[DNA methyltransferase\|DNA methyltransferase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Spodoptera frugiperda]]		[[Category: Spodoptera frugiperda]]
-	[[Category: Ding, J.]]	+	[[Category: Ding, J]]
-	[[Category: Du, J.]]	+	[[Category: Du, J]]
-	[[Category: Li, S.]]	+	[[Category: Li, S]]
-	[[Category: Yang, H.]]	+	[[Category: Yang, H]]
-	[[Category: Yin, J.]]	+	[[Category: Yin, J]]
-	[[Category: Zhong, J.]]	+	[[Category: Zhong, J]]
	[[Category: Sah binding]]		[[Category: Sah binding]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 13:26, 27 February 2013

OCA — Wed, 27 Feb 2013 13:26:21 GMT

←Older revision		Revision as of 13:26, 27 February 2013
Line 1:		Line 1:
-	[[Image:4h0n.~~jpg~~\|left\|200px]]	+	[[Image:4h0n.png\|left\|200px]]

	{{STRUCTURE_4h0n\| PDB=4h0n \| SCENE= }}		{{STRUCTURE_4h0n\| PDB=4h0n \| SCENE= }}
Line 8:		Line 8:
	==About this Structure==		==About this Structure==
	[[4h0n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H0N OCA].		[[4h0n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H0N OCA].
		+
		+	==See Also==
		+	*[[DNA methyltransferase\|DNA methyltransferase]]
	[[Category: Spodoptera frugiperda]]		[[Category: Spodoptera frugiperda]]
	[[Category: Ding, J.]]		[[Category: Ding, J.]]

OCA at 06:46, 14 November 2012

OCA — Wed, 14 Nov 2012 06:46:09 GMT

←Older revision		Revision as of 06:46, 14 November 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:4h0n.jpg\|left\|200px]]

-	~~The entry~~ 4h0n ~~is ON HOLD~~ ~~until Paper Publication~~	+	{{STRUCTURE_4h0n\| PDB=4h0n \| SCENE= }}

-	~~Authors: Li, S., Du, J., Yang, H., Yin, J., Zhong, J., Ding, J.~~	+	===Crystal structure of Spodoptera frugiperda DNMT2 E260A/E261A/K263A mutant===

-	~~Description: Crystal~~ structure of Spodoptera frugiperda ~~DNMT2 E260A~~/~~E261A~~/~~K263A mutant~~	+
		+	==About this Structure==
		+	[[4h0n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H0N OCA].
		+	[[Category: Spodoptera frugiperda]]
		+	[[Category: Ding, J.]]
		+	[[Category: Du, J.]]
		+	[[Category: Li, S.]]
		+	[[Category: Yang, H.]]
		+	[[Category: Yin, J.]]
		+	[[Category: Zhong, J.]]
		+	[[Category: Sah binding]]
		+	[[Category: Transferase]]

OCA at 07:07, 24 October 2012

OCA — Wed, 24 Oct 2012 07:07:24 GMT

←Older revision		Revision as of 07:07, 24 October 2012
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4h0n is ON HOLD	+	The entry 4h0n is ON HOLD until Paper Publication

	Authors: Li, S., Du, J., Yang, H., Yin, J., Zhong, J., Ding, J.		Authors: Li, S., Du, J., Yang, H., Yin, J., Zhong, J., Ding, J.

	Description: Crystal structure of Spodoptera frugiperda DNMT2 E260A/E261A/K263A mutant		Description: Crystal structure of Spodoptera frugiperda DNMT2 E260A/E261A/K263A mutant

OCA: Protected "4h0n" [edit=sysop:move=sysop]

OCA — Wed, 19 Sep 2012 06:56:44 GMT

Protected "4h0n" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:56, 19 September 2012

OCA: New page: '''Unreleased structure''' The entry 4h0n is ON HOLD Authors: Li, S., Du, J., Yang, H., Yin, J., Zhong, J., Ding, J. Description: Crystal structure of Spodoptera frugiperda DNMT2 E260A...

OCA — Wed, 19 Sep 2012 06:56:43 GMT

New page: '''Unreleased structure''' The entry 4h0n is ON HOLD Authors: Li, S., Du, J., Yang, H., Yin, J., Zhong, J., Ding, J. Description: Crystal structure of Spodoptera frugiperda DNMT2 E260A...

New page

'''Unreleased structure'''

The entry 4h0n is ON HOLD

Authors: Li, S., Du, J., Yang, H., Yin, J., Zhong, J., Ding, J.

Description: Crystal structure of Spodoptera frugiperda DNMT2 E260A/E261A/K263A mutant