4i7w - Revision history

OCA at 08:47, 9 November 2022

OCA — Wed, 09 Nov 2022 08:47:14 GMT

←Older revision		Revision as of 08:47, 9 November 2022
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	==Agrobacterium tumefaciens DHDPS with lysine and pyruvate==		==Agrobacterium tumefaciens DHDPS with lysine and pyruvate==
-	<StructureSection load='4i7w' size='340' side='right' caption='[[4i7w]], [[Resolution\|resolution]] 1.30Å' scene=''>	+	<StructureSection load='4i7w' size='340' side='right'caption='[[4i7w]], [[Resolution\|resolution]] 1.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4i7w]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Agrsh Agrsh~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I7W OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4I7W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4i7w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabacearum Agrobacterium fabacearum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I7W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4I7W FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, ~~<scene name='pdbligand=LYS:LYSINE'>LYS</scene></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=KPI:(2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE)AMINO]HEXANOIC+ACID'>KPI</scene>, <scene name='pdbligand=LYS:LYSINE'>LYS</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=KPI:(2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE)AMINO]HEXANOIC+ACID'>KPI</scene>~~</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4i7w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i7w OCA], [https://pdbe.org/4i7w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4i7w RCSB], [https://www.ebi.ac.uk/pdbsum/4i7w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4i7w ProSAT]</span></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4i7u\|4i7u]]~~, ~~[[4i7v\|4i7v]]~~<~~/td></tr>~~	+
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b></td><td class="sblockDat">dapA, AGROH133_05014 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=861208 AGRSH])</td></tr>~~	+
-	~~<tr id='activity~~'>~~<td class="sblockLbl"><b>Activity:~~</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-hydroxy-tetrahydrodipicolinate_synthase 4-hydroxy-tetrahydrodipicolinate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.3.7 4.3.3.7] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4i7w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i7w OCA], [~~http~~://pdbe.org/4i7w PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4i7w RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4i7w PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4i7w ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~F0L8Z6_AGRSH F0L8Z6_AGRSH]~~] Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA~~) (By similarity~~).[HAMAP-Rule:MF_00418~~][SAAS:SAAS020625_004_011311~~]	+	[https://www.uniprot.org/uniprot/F0L8Z6_AGRFH F0L8Z6_AGRFH] Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).[ARBA:ARBA00003294][HAMAP-Rule:MF_00418]

	==See Also==		==See Also==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~4-hydroxy-tetrahydrodipicolinate synthase~~]]	+	[[Category: Agrobacterium fabacearum]]
-	[[Category: ~~Agrsh~~]]	+	[[Category: Large Structures]]
-	[[Category: Atkinson~~, S C~~]]	+	[[Category: Atkinson SC]]
-	[[Category: Dobson~~, R C.J~~]]	+	[[Category: Dobson RCJ]]
-	[[Category: Dogovski, C]]	+	[[Category: Dogovski C]]
-	[[Category: Perugini~~, M A]]~~	+	[[Category: Perugini MA]]
-	~~[[Category: Biosynthetic protein]]~~	+
-	~~[[Category: Cytosol]]~~	+
-	~~[[Category: Lysine biosynthesis]]~~	+
-	~~[[Category: Pyruvate bound to acitve site lysine]]~~	+
-	~~[[Category: Tim barrel~~]]	+

OCA at 07:06, 5 August 2016

OCA — Fri, 05 Aug 2016 07:06:57 GMT

←Older revision		Revision as of 07:06, 5 August 2016
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		+
	==Agrobacterium tumefaciens DHDPS with lysine and pyruvate==		==Agrobacterium tumefaciens DHDPS with lysine and pyruvate==
	<StructureSection load='4i7w' size='340' side='right' caption='[[4i7w]], [[Resolution\|resolution]] 1.30Å' scene=''>		<StructureSection load='4i7w' size='340' side='right' caption='[[4i7w]], [[Resolution\|resolution]] 1.30Å' scene=''>
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	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dapA, AGROH133_05014 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=861208 AGRSH])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dapA, AGROH133_05014 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=861208 AGRSH])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-hydroxy-tetrahydrodipicolinate_synthase 4-hydroxy-tetrahydrodipicolinate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.3.7 4.3.3.7] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-hydroxy-tetrahydrodipicolinate_synthase 4-hydroxy-tetrahydrodipicolinate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.3.7 4.3.3.7] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4i7w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i7w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4i7w RCSB], [http://www.ebi.ac.uk/pdbsum/4i7w PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4i7w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i7w OCA], [http://pdbe.org/4i7w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4i7w RCSB], [http://www.ebi.ac.uk/pdbsum/4i7w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4i7w ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 16:44, 25 December 2014

OCA — Thu, 25 Dec 2014 16:44:37 GMT

←Older revision		Revision as of 16:44, 25 December 2014
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-	~~{{STRUCTURE_4i7w~~\| ~~PDB~~=4i7w \| ~~SCENE~~= }}	+	==Agrobacterium tumefaciens DHDPS with lysine and pyruvate==
-	===~~Agrobacterium tumefaciens DHDPS~~ with ~~lysine and pyruvate~~===	+	<StructureSection load='4i7w' size='340' side='right' caption='[[4i7w]], [[Resolution\|resolution]] 1.30Å' scene=''>
-		+	== Structural highlights ==
-	==Function==	+	<table><tr><td colspan='2'>[[4i7w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrsh Agrsh]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I7W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4I7W FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=LYS:LYSINE'>LYS</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KPI:(2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE)AMINO]HEXANOIC+ACID'>KPI</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4i7u\|4i7u]], [[4i7v\|4i7v]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dapA, AGROH133_05014 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=861208 AGRSH])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-hydroxy-tetrahydrodipicolinate_synthase 4-hydroxy-tetrahydrodipicolinate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.3.7 4.3.3.7] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4i7w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i7w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4i7w RCSB], [http://www.ebi.ac.uk/pdbsum/4i7w PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
	[[http://www.uniprot.org/uniprot/F0L8Z6_AGRSH F0L8Z6_AGRSH]] Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA) (By similarity).[HAMAP-Rule:MF_00418][SAAS:SAAS020625_004_011311]		[[http://www.uniprot.org/uniprot/F0L8Z6_AGRSH F0L8Z6_AGRSH]] Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA) (By similarity).[HAMAP-Rule:MF_00418][SAAS:SAAS020625_004_011311]

-	==~~About this Structure~~==	+	==See Also==
-	[[~~4i7w~~]] ~~is a 2 chain structure. Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=4I7W OCA].~~	+	*[[Dihydrodipicolinate synthase\|Dihydrodipicolinate synthase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: 4-hydroxy-tetrahydrodipicolinate synthase]]		[[Category: 4-hydroxy-tetrahydrodipicolinate synthase]]
-	[[Category: Atkinson, S C.]]	+	[[Category: Agrsh]]
-	[[Category: Dobson, R C.J.]]	+	[[Category: Atkinson, S C]]
-	[[Category: Dogovski, C.]]	+	[[Category: Dobson, R C.J]]
-	[[Category: Perugini, M A.]]	+	[[Category: Dogovski, C]]
		+	[[Category: Perugini, M A]]
	[[Category: Biosynthetic protein]]		[[Category: Biosynthetic protein]]
	[[Category: Cytosol]]		[[Category: Cytosol]]

OCA at 07:31, 4 December 2013

OCA — Wed, 04 Dec 2013 07:31:14 GMT

←Older revision		Revision as of 07:31, 4 December 2013
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-	~~'''Unreleased structure'''~~	+	{{STRUCTURE_4i7w\| PDB=4i7w \| SCENE= }}
		+	===Agrobacterium tumefaciens DHDPS with lysine and pyruvate===

-	~~The entry 4i7w is ON HOLD until Dec 04 2014~~	+	==Function==
		+	[[http://www.uniprot.org/uniprot/F0L8Z6_AGRSH F0L8Z6_AGRSH]] Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA) (By similarity).[HAMAP-Rule:MF_00418][SAAS:SAAS020625_004_011311]

-	~~Authors~~: Atkinson, S.C.~~, Dogovski, C.,~~ Dobson, R.C.J., Perugini, M.A.	+	==About this Structure==
-		+	[[4i7w]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I7W OCA].
-	~~Description~~: ~~Agrobacterium tumefaciens DHDPS with~~ lysine ~~and pyruvate~~	+	[[Category: 4-hydroxy-tetrahydrodipicolinate synthase]]
		+	[[Category: Atkinson, S C.]]
		+	[[Category: Dobson, R C.J.]]
		+	[[Category: Dogovski, C.]]
		+	[[Category: Perugini, M A.]]
		+	[[Category: Biosynthetic protein]]
		+	[[Category: Cytosol]]
		+	[[Category: Lysine biosynthesis]]
		+	[[Category: Pyruvate bound to acitve site lysine]]
		+	[[Category: Tim barrel]]

OCA at 07:17, 13 November 2013

OCA — Wed, 13 Nov 2013 07:17:51 GMT

←Older revision		Revision as of 07:17, 13 November 2013
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4i7w is ON HOLD until ~~Paper Publication~~	+	The entry 4i7w is ON HOLD until Dec 04 2014

	Authors: Atkinson, S.C., Dogovski, C., Dobson, R.C.J., Perugini, M.A.		Authors: Atkinson, S.C., Dogovski, C., Dobson, R.C.J., Perugini, M.A.

	Description: Agrobacterium tumefaciens DHDPS with lysine and pyruvate		Description: Agrobacterium tumefaciens DHDPS with lysine and pyruvate

OCA at 08:53, 2 January 2013

OCA — Wed, 02 Jan 2013 08:53:47 GMT

←Older revision		Revision as of 08:53, 2 January 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4i7w is ON HOLD	+	The entry 4i7w is ON HOLD until Paper Publication

	Authors: Atkinson, S.C., Dogovski, C., Dobson, R.C.J., Perugini, M.A.		Authors: Atkinson, S.C., Dogovski, C., Dobson, R.C.J., Perugini, M.A.

	Description: Agrobacterium tumefaciens DHDPS with lysine and pyruvate		Description: Agrobacterium tumefaciens DHDPS with lysine and pyruvate

OCA: Protected "4i7w" [edit=sysop:move=sysop]

OCA — Wed, 12 Dec 2012 20:49:56 GMT

Protected "4i7w" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:49, 12 December 2012

OCA: New page: '''Unreleased structure''' The entry 4i7w is ON HOLD Authors: Atkinson, S.C., Dogovski, C., Dobson, R.C.J., Perugini, M.A. Description: Agrobacterium tumefaciens DHDPS with lysine and ...

OCA — Wed, 12 Dec 2012 20:49:55 GMT

New page: '''Unreleased structure''' The entry 4i7w is ON HOLD Authors: Atkinson, S.C., Dogovski, C., Dobson, R.C.J., Perugini, M.A. Description: Agrobacterium tumefaciens DHDPS with lysine and ...

New page

'''Unreleased structure'''

The entry 4i7w is ON HOLD

Authors: Atkinson, S.C., Dogovski, C., Dobson, R.C.J., Perugini, M.A.

Description: Agrobacterium tumefaciens DHDPS with lysine and pyruvate