4iau - Revision history

OCA at 08:54, 9 November 2022

OCA — Wed, 09 Nov 2022 08:54:48 GMT

←Older revision		Revision as of 08:54, 9 November 2022
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	<StructureSection load='4iau' size='340' side='right'caption='[[4iau]], [[Resolution\|resolution]] 0.99Å' scene=''>		<StructureSection load='4iau' size='340' side='right'caption='[[4iau]], [[Resolution\|resolution]] 0.99Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4iau]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Geocy Geocy~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IAU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4IAU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4iau]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geodia_cydonium Geodia cydonium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IAU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IAU FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4iau FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4iau OCA], [https://pdbe.org/4iau PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4iau RCSB], [https://www.ebi.ac.uk/pdbsum/4iau PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4iau ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4iau FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4iau OCA], [~~http~~://pdbe.org/4iau PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4iau RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4iau PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4iau ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O18426_GEOCY O18426_GEOCY]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 4iau" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 4iau" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Crystallin 3D structures\|Crystallin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Geocy~~]]	+	[[Category: Geodia cydonium]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Grassi, M]]	+	[[Category: Grassi M]]
-	[[Category: Mazzarella, L]]	+	[[Category: Mazzarella L]]
-	[[Category: Merlino, A]]	+	[[Category: Merlino A]]
-	[[Category: Sica, F]]	+	[[Category: Sica F]]
-	[[Category: Vergara, A]]	+	[[Category: Vergara A]]
-	~~[[Category: Greek key strand motif]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 07:21, 27 March 2019

OCA — Wed, 27 Mar 2019 07:21:51 GMT

←Older revision		Revision as of 07:21, 27 March 2019
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	==Atomic resolution structure of Geodin, a beta-gamma crystallin from Geodia cydonium==		==Atomic resolution structure of Geodin, a beta-gamma crystallin from Geodia cydonium==
-	<StructureSection load='4iau' size='340' side='right' caption='[[4iau]], [[Resolution\|resolution]] 0.99Å' scene=''>	+	<StructureSection load='4iau' size='340' side='right'caption='[[4iau]], [[Resolution\|resolution]] 0.99Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4iau]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geocy Geocy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IAU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IAU FirstGlance]. <br>		<table><tr><td colspan='2'>[[4iau]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geocy Geocy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IAU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IAU FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Geocy]]		[[Category: Geocy]]
		+	[[Category: Large Structures]]
	[[Category: Grassi, M]]		[[Category: Grassi, M]]
	[[Category: Mazzarella, L]]		[[Category: Mazzarella, L]]

OCA at 06:38, 5 August 2016

OCA — Fri, 05 Aug 2016 06:38:47 GMT

←Older revision		Revision as of 06:38, 5 August 2016
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		+
	==Atomic resolution structure of Geodin, a beta-gamma crystallin from Geodia cydonium==		==Atomic resolution structure of Geodin, a beta-gamma crystallin from Geodia cydonium==
	<StructureSection load='4iau' size='340' side='right' caption='[[4iau]], [[Resolution\|resolution]] 0.99Å' scene=''>		<StructureSection load='4iau' size='340' side='right' caption='[[4iau]], [[Resolution\|resolution]] 0.99Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4iau]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Geodia_cydonium Geodia cydonium~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IAU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IAU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4iau]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geocy Geocy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IAU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IAU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4iau FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4iau OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4iau RCSB], [http://www.ebi.ac.uk/pdbsum/4iau PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4iau FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4iau OCA], [http://pdbe.org/4iau PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4iau RCSB], [http://www.ebi.ac.uk/pdbsum/4iau PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4iau ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4iau" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Geodia cydonium~~]]	+	[[Category: Geocy]]
	[[Category: Grassi, M]]		[[Category: Grassi, M]]
	[[Category: Mazzarella, L]]		[[Category: Mazzarella, L]]

OCA at 12:05, 21 December 2014

OCA — Sun, 21 Dec 2014 12:05:43 GMT

←Older revision		Revision as of 12:05, 21 December 2014
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-	~~{{STRUCTURE_4iau\| PDB=4iau \| SCENE= }}~~	+	==Atomic resolution structure of Geodin, a beta-gamma crystallin from Geodia cydonium==
-	===Atomic resolution structure of Geodin, a beta-gamma crystallin from Geodia cydonium===	+	<StructureSection load='4iau' size='340' side='right' caption='[[4iau]], [[Resolution\|resolution]] 0.99Å' scene=''>
-	~~{{ABSTRACT_PUBMED_23695240}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4iau]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geodia_cydonium Geodia cydonium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IAU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IAU FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4iau FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4iau OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4iau RCSB], [http://www.ebi.ac.uk/pdbsum/4iau PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The betagamma-crystallin superfamily includes highly diverse proteins belonging to all of the kingdoms of life. Based on structural topology, these proteins are considered to be evolutionarily related to the long-lived betagamma-crystallins that constitute the vertebrate eye lens. This study reports the crystallographic structure at 0.99 A resolution of the two-domain betagamma-crystallin (geodin) from the sponge Geodia cydonium. This is the most ancient member of the betagamma-crystallin superfamily in metazoans. The X-ray structure shows that the geodin domains adopt the typical betagamma-crystallin fold with a paired Greek-key motif, thus confirming the hypothesis that the crystallin-type scaffold used in the evolution of bacteria and moulds was recruited very early in metazoans. As a significant new structural feature, the sponge protein possesses a unique interdomain interface made up by pairing between the second motif of the first domain and the first motif of the second domain. The atomic resolution also allowed a detailed analysis of the calcium-binding site of the protein.

-	~~==About this Structure==~~	+	A novel interdomain interface in crystallins: structural characterization of the betagamma-crystallin from Geodia cydonium at 0.99 A resolution.,Vergara A, Grassi M, Sica F, Pizzo E, D'Alessio G, Mazzarella L, Merlino A Acta Crystallogr D Biol Crystallogr. 2013 Jun;69(Pt 6):960-7. doi:, 10.1107/S0907444913003569. Epub 2013 May 2. PMID:23695240<ref>PMID:23695240</ref>
-	~~[[4iau]] is a 1 chain structure with sequence~~ from ~~[http://en.wikipedia.org/wiki/Geodia_cydonium~~ Geodia cydonium]. ~~Full crystallographic information is available from [http~~:/~~/oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=4IAU OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:023695240</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Geodia cydonium]]		[[Category: Geodia cydonium]]
-	[[Category: Grassi, M.]]	+	[[Category: Grassi, M]]
-	[[Category: Mazzarella, L.]]	+	[[Category: Mazzarella, L]]
-	[[Category: Merlino, A.]]	+	[[Category: Merlino, A]]
-	[[Category: Sica, F.]]	+	[[Category: Sica, F]]
-	[[Category: Vergara, A.]]	+	[[Category: Vergara, A]]
	[[Category: Greek key strand motif]]		[[Category: Greek key strand motif]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 15:11, 19 June 2013

OCA — Wed, 19 Jun 2013 15:11:32 GMT

←Older revision		Revision as of 15:11, 19 June 2013
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-	~~'''Unreleased~~ structure~~'''~~	+	{{STRUCTURE_4iau\| PDB=4iau \| SCENE= }}
		+	===Atomic resolution structure of Geodin, a beta-gamma crystallin from Geodia cydonium===
		+	{{ABSTRACT_PUBMED_23695240}}

-	~~The entry~~ 4iau is ~~ON HOLD~~	+	==About this Structure==
		+	[[4iau]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geodia_cydonium Geodia cydonium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IAU OCA].

-	~~Authors~~: ~~Vergara, A.,~~ Grassi, M.~~, Sica, F.,~~ Mazzarella, L., Merlino, A.	+	==Reference==
-		+	<ref group="xtra">PMID:023695240</ref><references group="xtra"/><references/>
-	~~Description~~: ~~Atomic resolution structure of Geodin~~, ~~a beta-gamma crystallin from Geodia cydonium~~	+	[[Category: Geodia cydonium]]
		+	[[Category: Grassi, M.]]
		+	[[Category: Mazzarella, L.]]
		+	[[Category: Merlino, A.]]
		+	[[Category: Sica, F.]]
		+	[[Category: Vergara, A.]]
		+	[[Category: Greek key strand motif]]
		+	[[Category: Unknown function]]

OCA: Protected "4iau" [edit=sysop:move=sysop]

OCA — Wed, 19 Dec 2012 11:05:33 GMT

Protected "4iau" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:05, 19 December 2012

OCA: New page: '''Unreleased structure''' The entry 4iau is ON HOLD Authors: Vergara, A., Grassi, M., Sica, F., Mazzarella, L., Merlino, A. Description: Atomic resolution structure of Geodin, a beta-...

OCA — Wed, 19 Dec 2012 11:05:32 GMT

New page: '''Unreleased structure''' The entry 4iau is ON HOLD Authors: Vergara, A., Grassi, M., Sica, F., Mazzarella, L., Merlino, A. Description: Atomic resolution structure of Geodin, a beta-...

New page

'''Unreleased structure'''

The entry 4iau is ON HOLD

Authors: Vergara, A., Grassi, M., Sica, F., Mazzarella, L., Merlino, A.

Description: Atomic resolution structure of Geodin, a beta-gamma crystallin from Geodia cydonium