4ixr - Revision history

OCA at 15:32, 20 September 2023

OCA — Wed, 20 Sep 2023 15:32:52 GMT

←Older revision		Revision as of 15:32, 20 September 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ixr]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus Thermosynechococcus vestitus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IXR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IXR FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ixr]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus Thermosynechococcus vestitus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IXR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IXR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=OEC:OXYGEN+EVOLVING+SYSTEM'>OEC</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 5.9Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=OEC:OXYGEN+EVOLVING+SYSTEM'>OEC</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ixr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ixr OCA], [https://pdbe.org/4ixr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ixr RCSB], [https://www.ebi.ac.uk/pdbsum/4ixr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ixr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ixr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ixr OCA], [https://pdbe.org/4ixr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ixr RCSB], [https://www.ebi.ac.uk/pdbsum/4ixr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ixr ProSAT]</span></td></tr>
	</table>		</table>
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	==See Also==		==See Also==
	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]		*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
-	*[[Photosystem II\|Photosystem II]]	+	*[[Photosystem II 3D structures\|Photosystem II 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 21:19, 16 November 2022

OCA — Wed, 16 Nov 2022 21:19:01 GMT

←Older revision		Revision as of 21:19, 16 November 2022
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	<StructureSection load='4ixr' size='340' side='right'caption='[[4ixr]], [[Resolution\|resolution]] 5.90Å' scene=''>		<StructureSection load='4ixr' size='340' side='right'caption='[[4ixr]], [[Resolution\|resolution]] 5.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ixr]] is a 40 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Thermosynechococcus_elongatus~~ Thermosynechococcus ~~elongatus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IXR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4IXR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ixr]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus Thermosynechococcus vestitus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IXR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IXR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=OEC:OXYGEN+EVOLVING+SYSTEM'>OEC</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=OEC:OXYGEN+EVOLVING+SYSTEM'>OEC</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ixr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ixr OCA], [https://pdbe.org/4ixr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ixr RCSB], [https://www.ebi.ac.uk/pdbsum/4ixr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ixr ProSAT]</span></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4ixq\|4ixq]]</td></tr>~~	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photosystem_II Photosystem II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.3.9 1.10.3.9] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4ixr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ixr OCA], [~~http~~://pdbe.org/4ixr PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4ixr RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4ixr PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4ixr ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~PSBL_THEEB PSBL_THEEB~~]~~] Required for PSII activity (By similarity). [[http://www.uniprot.org/uniprot/YCF12_THEEB YCF12_THEEB]] A core subunit of photosystem~~ II (PSII)~~.[HAMAP~~-~~Rule~~:MF_01329] [[http://www.uniprot.org/uniprot/PSBA1_THEEB PSBA1_THEEB]] This is one of the two reaction center proteins of photosystem II. [[http://www.uniprot.org/uniprot/PSBX_THEEB PSBX_THEEB]] Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.<ref>PMID:11230572</ref> [[http://www.uniprot.org/uniprot/CY550_THEEB CY550_THEEB]] Low-potential cytochrome c that plays a role in the oxygen-evolving complex of photosystem II. It is not essential for growth under normal conditions but is required under low CO(2) ~~concentrations~~.~~[HAMAP-Rule:MF_01378] [[http://www.uniprot.org/uniprot/PSBO_THEEB PSBO_THEEB]] MSP binds to~~ a ~~putative Mn-binding protein~~ and ~~keeps 2 of the 4 Mn-atoms associated with PSII (By similarity)~~. ~~[[http:~~//~~www.uniprot.org/uniprot/PSBF_THEEB PSBF_THEEB]] This b-type cytochrome is tightly associated with the~~ reaction center of ~~photosystem II and possibly is part of the water-oxidation complex (By similarity)~~.[HAMAP-Rule:~~MF_00643~~] ~~[[http~~://www.uniprot.org/uniprot/PSBJ_THEEB PSBJ_THEEB]] This protein is a component of the reaction center of photosystem II (By similarity). [[http://www.uniprot.org/uniprot/PSBT_THEEB PSBT_THEEB]] Seems to play a role in the dimerization of PSII.<ref>PMID:~~15653799~~</ref> [[http://www.uniprot.org/uniprot/PSBU_THEEB PSBU_THEEB]] Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation (By similarity).[HAMAP-Rule:MF_00589] [[http://www.uniprot.org/uniprot/PSBI_THEEB PSBI_THEEB]] This protein is a component of the reaction center of photosystem II.[HAMAP-Rule:MF_01316] [[http://www.uniprot.org/uniprot/PSBZ_THEEB PSBZ_THEEB]] Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna. May also aid in binding of PsbK, Ycf12 and the oxygen-evolving complex to PSII, at least in vitro.<ref>PMID:~~17967798~~</ref> [[http://www.uniprot.org/uniprot/PSBK_THEEB PSBK_THEEB]] This protein is a component of the reaction center of photosystem II.[HAMAP-Rule:MF_00441] [[http://www.uniprot.org/uniprot/PSBE_THEEB PSBE_THEEB]] This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex.[HAMAP-Rule:MF_00642]	+	[https://www.uniprot.org/uniprot/PSBA1_THEVB PSBA1_THEVB] Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors.[HAMAP-Rule:MF_01379]<ref>PMID:20558739</ref> <ref>PMID:21367867</ref> <ref>PMID:25006873</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 20:

	==See Also==		==See Also==
-	*[[Cytochrome c\|Cytochrome c]]	+	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
	*[[Photosystem II\|Photosystem II]]		*[[Photosystem II\|Photosystem II]]
	== References ==		== References ==
Line 30:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Photosystem II]]~~	+	[[Category: Thermosynechococcus vestitus]]
-	[[Category: Thermosynechococcus ~~elongatus~~]]	+	[[Category: Adams PD]]
-	[[Category: Adams~~, P D~~]]	+	[[Category: Alonso-Mori R]]
-	[[Category: Alonso-Mori, R]]	+	[[Category: Bergmann U]]
-	[[Category: Bergmann, U]]	+	[[Category: Bogan MJ]]
-	[[Category: Bogan~~, M J~~]]	+	[[Category: Boutet S]]
-	[[Category: Boutet, S]]	+	[[Category: DiFiore D]]
-	[[Category: DiFiore, D]]	+	[[Category: Echols N]]
-	[[Category: Echols, N]]	+	[[Category: Fry AR]]
-	[[Category: Fry~~, A R~~]]	+	[[Category: Gildea RJ]]
-	[[Category: Gildea~~, R J~~]]	+	[[Category: Glatzel P]]
-	[[Category: Glatzel, P]]	+	[[Category: Gloeckner C]]
-	[[Category: Gloeckner, C]]	+	[[Category: Grosse-Kunstleve RW]]
-	[[Category: Grosse-Kunstleve~~, R W~~]]	+	[[Category: Gul S]]
-	[[Category: Gul, S]]	+	[[Category: Han G]]
-	[[Category: Han, G]]	+	[[Category: Hattne J]]
-	[[Category: Hattne, J]]	+	[[Category: Hellmich J]]
-	[[Category: Hellmich, J]]	+	[[Category: Kern J]]
-	[[Category: Kern, J]]	+	[[Category: Koglin JE]]
-	[[Category: Koglin~~, J E~~]]	+	[[Category: Koroidov S]]
-	[[Category: Koroidov, S]]	+	[[Category: Laksmono H]]
-	[[Category: Laksmono, H]]	+	[[Category: Lampe A]]
-	[[Category: Lampe, A]]	+	[[Category: Lassalle-Kaiser B]]
-	[[Category: Lassalle-Kaiser, B]]	+	[[Category: Latimer MJ]]
-	[[Category: Latimer~~, M J~~]]	+	[[Category: Messerschmidt M]]
-	[[Category: Messerschmidt, M]]	+	[[Category: Messinger J]]
-	[[Category: Messinger, J]]	+	[[Category: Miahnahri A]]
-	[[Category: Miahnahri, A]]	+	[[Category: Milathianaki D]]
-	[[Category: Milathianaki, D]]	+	[[Category: Sauter NK]]
-	[[Category: Sauter~~, N K~~]]	+	[[Category: Schafer DW]]
-	[[Category: Schafer~~, D W~~]]	+	[[Category: Seibert MM]]
-	[[Category: Seibert~~, M M~~]]	+	[[Category: Sellberg J]]
-	[[Category: Sellberg, J]]	+	[[Category: Sierra RG]]
-	[[Category: Sierra~~, R G~~]]	+	[[Category: Sokaras D]]
-	[[Category: Sokaras, D]]	+	[[Category: Tran R]]
-	[[Category: Tran, R]]	+	[[Category: Weng T-C]]
-	[[Category: Weng, T C]]	+	[[Category: White WE]]
-	[[Category: White~~, W E~~]]	+	[[Category: Williams GJ]]
-	[[Category: Williams~~, G J~~]]	+	[[Category: Yachandra VK]]
-	[[Category: Yachandra~~, V K~~]]	+	[[Category: Yano J]]
-	[[Category: Yano, J]]	+	[[Category: Zouni A]]
-	[[Category: Zouni, A]]	+	[[Category: Zwart PH]]
-	[[Category: Zwart~~, P H]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Manganese]]~~	+
-	~~[[Category: Membrane complex]]~~	+
-	~~[[Category: Photosynthesis]]~~	+
-	~~[[Category: Ps ii]]~~	+
-	~~[[Category: Ps2]]~~	+
-	~~[[Category: Reaction center]]~~	+
-	~~[[Category: Thylakoid membrane]]~~	+
-	~~[[Category: Transmembrane alpha-helix]]~~	+
-	~~[[Category: Water oxidation~~]]	+

OCA at 09:23, 3 April 2019

OCA — Wed, 03 Apr 2019 09:23:43 GMT

←Older revision		Revision as of 09:23, 3 April 2019
Line 1:		Line 1:

	==RT fs X-ray diffraction of Photosystem II, first illuminated state==		==RT fs X-ray diffraction of Photosystem II, first illuminated state==
-	<StructureSection load='4ixr' size='340' side='right' caption='[[4ixr]], [[Resolution\|resolution]] 5.90Å' scene=''>	+	<StructureSection load='4ixr' size='340' side='right'caption='[[4ixr]], [[Resolution\|resolution]] 5.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ixr]] is a 40 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IXR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IXR FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ixr]] is a 40 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IXR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IXR FirstGlance]. <br>
Line 11:		Line 11:
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~PSBF_THEEB PSBF_THEEB~~]] ~~This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex~~ (By similarity).~~[HAMAP-Rule:MF_00643]~~ [[http://www.uniprot.org/uniprot/~~PSBL_THEEB PSBL_THEEB~~]] ~~Required for~~ PSII ~~activity (By similarity~~). [[http://www.uniprot.org/uniprot/~~PSBJ_THEEB PSBJ_THEEB~~]] This ~~protein~~ is ~~a component~~ of the reaction center of photosystem II ~~(By similarity)~~. [[http://www.uniprot.org/uniprot/~~YCF12_THEEB YCF12_THEEB~~]] ~~A core subunit~~ of ~~photosystem II~~ (~~PSII~~).~~[HAMAP-Rule~~:~~MF_01329]~~ [[http://www.uniprot.org/uniprot/~~PSBU_THEEB PSBU_THEEB~~]] ~~Stabilizes~~ the ~~structure of photosystem II~~ oxygen-evolving complex ~~(OEC), the ion environment~~ of ~~oxygen evolution and protects the OEC against heat-induced inactivation~~ (~~By similarity~~).[HAMAP-Rule:~~MF_00589~~] [[http://www.uniprot.org/uniprot/~~PSBT_THEEB PSBT_THEEB~~]] ~~Seems~~ to ~~play~~ a ~~role in the dimerization~~ of PSII.~~<ref>PMID:15653799</ref>~~ [[http://www.uniprot.org/uniprot/~~PSBI_THEEB PSBI_THEEB~~]] This ~~protein~~ is ~~a component of~~ the reaction center of photosystem II.[HAMAP-Rule:~~MF_01316~~] [[http://www.uniprot.org/uniprot/~~PSBA1_THEEB PSBA1_THEEB~~]] This is ~~one~~ of the ~~two~~ reaction center ~~proteins~~ of photosystem II. [[http://www.uniprot.org/uniprot/~~PSBX_THEEB PSBX_THEEB~~]] ~~Involved~~ in the ~~binding and/or turnover~~ of ~~quinones at the Q(B) site of Photosystem II~~.<ref>PMID:~~11230572~~</ref> [[http://www.uniprot.org/uniprot/~~PSBZ_THEEB PSBZ_THEEB~~]] ~~Controls~~ the ~~interaction~~ of photosystem II (~~PSII~~) ~~cores with~~ the ~~light-harvesting antenna. May also aid in binding~~ of ~~PsbK, Ycf12~~ and the ~~oxygen~~-~~evolving complex to PSII, at least in vitro~~.~~<ref>PMID~~:~~17967798</ref>~~ [[http://www.uniprot.org/uniprot/~~PSBK_THEEB PSBK_THEEB~~]] This protein is a component of the reaction center of photosystem II.[HAMAP-Rule:~~MF_00441~~] [[http://www.uniprot.org/uniprot/~~PSBO_THEEB PSBO_THEEB~~]] ~~MSP binds to a putative Mn~~-binding ~~protein and keeps 2~~ of the ~~4 Mn~~-~~atoms associated with~~ PSII ~~(By similarity)~~. [[http://www.uniprot.org/uniprot/~~CY550_THEEB CY550_THEEB~~]] ~~Low-potential cytochrome c that plays~~ a ~~role in~~ the ~~oxygen-evolving complex~~ of photosystem II~~. It is not essential for growth under normal conditions but is required under low CO(2) concentrations~~.[HAMAP-Rule:~~MF_01378~~] [[http://www.uniprot.org/uniprot/PSBE_THEEB PSBE_THEEB]] This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex.[HAMAP-Rule:MF_00642]	+	[[http://www.uniprot.org/uniprot/PSBL_THEEB PSBL_THEEB]] Required for PSII activity (By similarity). [[http://www.uniprot.org/uniprot/YCF12_THEEB YCF12_THEEB]] A core subunit of photosystem II (PSII).[HAMAP-Rule:MF_01329] [[http://www.uniprot.org/uniprot/PSBA1_THEEB PSBA1_THEEB]] This is one of the two reaction center proteins of photosystem II. [[http://www.uniprot.org/uniprot/PSBX_THEEB PSBX_THEEB]] Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.<ref>PMID:11230572</ref> [[http://www.uniprot.org/uniprot/CY550_THEEB CY550_THEEB]] Low-potential cytochrome c that plays a role in the oxygen-evolving complex of photosystem II. It is not essential for growth under normal conditions but is required under low CO(2) concentrations.[HAMAP-Rule:MF_01378] [[http://www.uniprot.org/uniprot/PSBO_THEEB PSBO_THEEB]] MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII (By similarity). [[http://www.uniprot.org/uniprot/PSBF_THEEB PSBF_THEEB]] This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex (By similarity).[HAMAP-Rule:MF_00643] [[http://www.uniprot.org/uniprot/PSBJ_THEEB PSBJ_THEEB]] This protein is a component of the reaction center of photosystem II (By similarity). [[http://www.uniprot.org/uniprot/PSBT_THEEB PSBT_THEEB]] Seems to play a role in the dimerization of PSII.<ref>PMID:15653799</ref> [[http://www.uniprot.org/uniprot/PSBU_THEEB PSBU_THEEB]] Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation (By similarity).[HAMAP-Rule:MF_00589] [[http://www.uniprot.org/uniprot/PSBI_THEEB PSBI_THEEB]] This protein is a component of the reaction center of photosystem II.[HAMAP-Rule:MF_01316] [[http://www.uniprot.org/uniprot/PSBZ_THEEB PSBZ_THEEB]] Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna. May also aid in binding of PsbK, Ycf12 and the oxygen-evolving complex to PSII, at least in vitro.<ref>PMID:17967798</ref> [[http://www.uniprot.org/uniprot/PSBK_THEEB PSBK_THEEB]] This protein is a component of the reaction center of photosystem II.[HAMAP-Rule:MF_00441] [[http://www.uniprot.org/uniprot/PSBE_THEEB PSBE_THEEB]] This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex.[HAMAP-Rule:MF_00642]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 23:

	==See Also==		==See Also==
		+	*[[Cytochrome c\|Cytochrome c]]
	*[[Photosystem II\|Photosystem II]]		*[[Photosystem II\|Photosystem II]]
	== References ==		== References ==
Line 28:		Line 29:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Photosystem II]]		[[Category: Photosystem II]]
	[[Category: Thermosynechococcus elongatus]]		[[Category: Thermosynechococcus elongatus]]

OCA at 10:29, 4 August 2016

OCA — Thu, 04 Aug 2016 10:29:20 GMT

←Older revision		Revision as of 10:29, 4 August 2016
Line 1:		Line 1:
		+
	==RT fs X-ray diffraction of Photosystem II, first illuminated state==		==RT fs X-ray diffraction of Photosystem II, first illuminated state==
	<StructureSection load='4ixr' size='340' side='right' caption='[[4ixr]], [[Resolution\|resolution]] 5.90Å' scene=''>		<StructureSection load='4ixr' size='340' side='right' caption='[[4ixr]], [[Resolution\|resolution]] 5.90Å' scene=''>
Line 7:		Line 8:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4ixq\|4ixq]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4ixq\|4ixq]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photosystem_II Photosystem II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.3.9 1.10.3.9] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photosystem_II Photosystem II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.3.9 1.10.3.9] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ixr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ixr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ixr RCSB], [http://www.ebi.ac.uk/pdbsum/4ixr PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ixr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ixr OCA], [http://pdbe.org/4ixr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ixr RCSB], [http://www.ebi.ac.uk/pdbsum/4ixr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ixr ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 20:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4ixr" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 08:21, 25 December 2014

OCA — Thu, 25 Dec 2014 08:21:00 GMT

←Older revision		Revision as of 08:21, 25 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_4ixr\| PDB=4ixr \| SCENE= }}~~	+	==RT fs X-ray diffraction of Photosystem II, first illuminated state==
-	===RT fs X-ray diffraction of Photosystem II, first illuminated state===	+	<StructureSection load='4ixr' size='340' side='right' caption='[[4ixr]], [[Resolution\|resolution]] 5.90Å' scene=''>
-	~~{{ABSTRACT_PUBMED_23413188}}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4ixr]] is a 40 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IXR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IXR FirstGlance]. <br>
-	==Function==	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=OEC:OXYGEN+EVOLVING+SYSTEM'>OEC</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4ixq\|4ixq]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photosystem_II Photosystem II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.3.9 1.10.3.9] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ixr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ixr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ixr RCSB], [http://www.ebi.ac.uk/pdbsum/4ixr PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
	[[http://www.uniprot.org/uniprot/PSBF_THEEB PSBF_THEEB]] This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex (By similarity).[HAMAP-Rule:MF_00643] [[http://www.uniprot.org/uniprot/PSBL_THEEB PSBL_THEEB]] Required for PSII activity (By similarity). [[http://www.uniprot.org/uniprot/PSBJ_THEEB PSBJ_THEEB]] This protein is a component of the reaction center of photosystem II (By similarity). [[http://www.uniprot.org/uniprot/YCF12_THEEB YCF12_THEEB]] A core subunit of photosystem II (PSII).[HAMAP-Rule:MF_01329] [[http://www.uniprot.org/uniprot/PSBU_THEEB PSBU_THEEB]] Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation (By similarity).[HAMAP-Rule:MF_00589] [[http://www.uniprot.org/uniprot/PSBT_THEEB PSBT_THEEB]] Seems to play a role in the dimerization of PSII.<ref>PMID:15653799</ref> [[http://www.uniprot.org/uniprot/PSBI_THEEB PSBI_THEEB]] This protein is a component of the reaction center of photosystem II.[HAMAP-Rule:MF_01316] [[http://www.uniprot.org/uniprot/PSBA1_THEEB PSBA1_THEEB]] This is one of the two reaction center proteins of photosystem II. [[http://www.uniprot.org/uniprot/PSBX_THEEB PSBX_THEEB]] Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.<ref>PMID:11230572</ref> [[http://www.uniprot.org/uniprot/PSBZ_THEEB PSBZ_THEEB]] Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna. May also aid in binding of PsbK, Ycf12 and the oxygen-evolving complex to PSII, at least in vitro.<ref>PMID:17967798</ref> [[http://www.uniprot.org/uniprot/PSBK_THEEB PSBK_THEEB]] This protein is a component of the reaction center of photosystem II.[HAMAP-Rule:MF_00441] [[http://www.uniprot.org/uniprot/PSBO_THEEB PSBO_THEEB]] MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII (By similarity). [[http://www.uniprot.org/uniprot/CY550_THEEB CY550_THEEB]] Low-potential cytochrome c that plays a role in the oxygen-evolving complex of photosystem II. It is not essential for growth under normal conditions but is required under low CO(2) concentrations.[HAMAP-Rule:MF_01378] [[http://www.uniprot.org/uniprot/PSBE_THEEB PSBE_THEEB]] This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex.[HAMAP-Rule:MF_00642]		[[http://www.uniprot.org/uniprot/PSBF_THEEB PSBF_THEEB]] This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex (By similarity).[HAMAP-Rule:MF_00643] [[http://www.uniprot.org/uniprot/PSBL_THEEB PSBL_THEEB]] Required for PSII activity (By similarity). [[http://www.uniprot.org/uniprot/PSBJ_THEEB PSBJ_THEEB]] This protein is a component of the reaction center of photosystem II (By similarity). [[http://www.uniprot.org/uniprot/YCF12_THEEB YCF12_THEEB]] A core subunit of photosystem II (PSII).[HAMAP-Rule:MF_01329] [[http://www.uniprot.org/uniprot/PSBU_THEEB PSBU_THEEB]] Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation (By similarity).[HAMAP-Rule:MF_00589] [[http://www.uniprot.org/uniprot/PSBT_THEEB PSBT_THEEB]] Seems to play a role in the dimerization of PSII.<ref>PMID:15653799</ref> [[http://www.uniprot.org/uniprot/PSBI_THEEB PSBI_THEEB]] This protein is a component of the reaction center of photosystem II.[HAMAP-Rule:MF_01316] [[http://www.uniprot.org/uniprot/PSBA1_THEEB PSBA1_THEEB]] This is one of the two reaction center proteins of photosystem II. [[http://www.uniprot.org/uniprot/PSBX_THEEB PSBX_THEEB]] Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.<ref>PMID:11230572</ref> [[http://www.uniprot.org/uniprot/PSBZ_THEEB PSBZ_THEEB]] Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna. May also aid in binding of PsbK, Ycf12 and the oxygen-evolving complex to PSII, at least in vitro.<ref>PMID:17967798</ref> [[http://www.uniprot.org/uniprot/PSBK_THEEB PSBK_THEEB]] This protein is a component of the reaction center of photosystem II.[HAMAP-Rule:MF_00441] [[http://www.uniprot.org/uniprot/PSBO_THEEB PSBO_THEEB]] MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII (By similarity). [[http://www.uniprot.org/uniprot/CY550_THEEB CY550_THEEB]] Low-potential cytochrome c that plays a role in the oxygen-evolving complex of photosystem II. It is not essential for growth under normal conditions but is required under low CO(2) concentrations.[HAMAP-Rule:MF_01378] [[http://www.uniprot.org/uniprot/PSBE_THEEB PSBE_THEEB]] This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex.[HAMAP-Rule:MF_00642]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Intense femtosecond x-ray pulses produced at the Linac Coherent Light Source (LCLS) were used for simultaneous x-ray diffraction (XRD) and x-ray emission spectroscopy (XES) of microcrystals of Photosystem II (PS II) at room temperature. This method probes the overall protein structure and the electronic structure of the Mn(4)CaO(5) cluster in the oxygen-evolving complex of PS II. XRD data are presented from both the dark state (S(1)) and the first illuminated state (S(2)) of PS II. Our simultaneous XRD/XES study shows that the PS II crystals are intact during our measurements at the LCLS, not only with respect to the structure of PS II, but also with regard to the electronic structure of the highly radiation-sensitive Mn(4)CaO(5) cluster, opening new directions for future dynamics studies.
		+
		+	Simultaneous Femtosecond X-ray Spectroscopy and Diffraction of Photosystem II at Room Temperature.,Kern J, Alonso-Mori R, Tran R, Hattne J, Gildea RJ, Echols N, Glockner C, Hellmich J, Laksmono H, Sierra RG, Lassalle-Kaiser B, Koroidov S, Lampe A, Han G, Gul S, Difiore D, Milathianaki D, Fry AR, Miahnahri A, Schafer DW, Messerschmidt M, Seibert MM, Koglin JE, Sokaras D, Weng TC, Sellberg J, Latimer MJ, Grosse-Kunstleve RW, Zwart PH, White WE, Glatzel P, Adams PD, Bogan MJ, Williams GJ, Boutet S, Messinger J, Zouni A, Sauter NK, Yachandra VK, Bergmann U, Yano J Science. 2013 Feb 14. PMID:23413188<ref>PMID:23413188</ref>

-	~~==About this Structure==~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[4ixr]] is~~ a ~~40 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=4IXR OCA].~~	+	</div>

-	==~~Reference~~==	+	==See Also==
-	<references ~~group="xtra"~~/><~~references~~/>	+	*[[Photosystem II\|Photosystem II]]
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Photosystem II]]		[[Category: Photosystem II]]
	[[Category: Thermosynechococcus elongatus]]		[[Category: Thermosynechococcus elongatus]]
-	[[Category: Adams, P D.]]	+	[[Category: Adams, P D]]
-	[[Category: Alonso-Mori, R.]]	+	[[Category: Alonso-Mori, R]]
-	[[Category: Bergmann, U.]]	+	[[Category: Bergmann, U]]
-	[[Category: Bogan, M J.]]	+	[[Category: Bogan, M J]]
-	[[Category: Boutet, S.]]	+	[[Category: Boutet, S]]
-	[[Category: DiFiore, D.]]	+	[[Category: DiFiore, D]]
-	[[Category: Echols, N.]]	+	[[Category: Echols, N]]
-	[[Category: Fry, A R.]]	+	[[Category: Fry, A R]]
-	[[Category: Gildea, R J.]]	+	[[Category: Gildea, R J]]
-	[[Category: Glatzel, P.]]	+	[[Category: Glatzel, P]]
-	[[Category: Gloeckner, C.]]	+	[[Category: Gloeckner, C]]
-	[[Category: Grosse-Kunstleve, R W.]]	+	[[Category: Grosse-Kunstleve, R W]]
-	[[Category: Gul, S.]]	+	[[Category: Gul, S]]
-	[[Category: Han, G.]]	+	[[Category: Han, G]]
-	[[Category: Hattne, J.]]	+	[[Category: Hattne, J]]
-	[[Category: Hellmich, J.]]	+	[[Category: Hellmich, J]]
-	[[Category: Kern, J.]]	+	[[Category: Kern, J]]
-	[[Category: Koglin, J E.]]	+	[[Category: Koglin, J E]]
-	[[Category: Koroidov, S.]]	+	[[Category: Koroidov, S]]
-	[[Category: Laksmono, H.]]	+	[[Category: Laksmono, H]]
-	[[Category: Lampe, A.]]	+	[[Category: Lampe, A]]
-	[[Category: Lassalle-Kaiser, B.]]	+	[[Category: Lassalle-Kaiser, B]]
-	[[Category: Latimer, M J.]]	+	[[Category: Latimer, M J]]
-	[[Category: Messerschmidt, M.]]	+	[[Category: Messerschmidt, M]]
-	[[Category: Messinger, J.]]	+	[[Category: Messinger, J]]
-	[[Category: Miahnahri, A.]]	+	[[Category: Miahnahri, A]]
-	[[Category: Milathianaki, D.]]	+	[[Category: Milathianaki, D]]
-	[[Category: Sauter, N K.]]	+	[[Category: Sauter, N K]]
-	[[Category: Schafer, D W.]]	+	[[Category: Schafer, D W]]
-	[[Category: Seibert, M M.]]	+	[[Category: Seibert, M M]]
-	[[Category: Sellberg, J.]]	+	[[Category: Sellberg, J]]
-	[[Category: Sierra, R G.]]	+	[[Category: Sierra, R G]]
-	[[Category: Sokaras, D.]]	+	[[Category: Sokaras, D]]
-	[[Category: Tran, R.]]	+	[[Category: Tran, R]]
-	[[Category: Weng, T C.]]	+	[[Category: Weng, T C]]
-	[[Category: White, W E.]]	+	[[Category: White, W E]]
-	[[Category: Williams, G J.]]	+	[[Category: Williams, G J]]
-	[[Category: Yachandra, V K.]]	+	[[Category: Yachandra, V K]]
-	[[Category: Yano, J.]]	+	[[Category: Yano, J]]
-	[[Category: Zouni, A.]]	+	[[Category: Zouni, A]]
-	[[Category: Zwart, P H.]]	+	[[Category: Zwart, P H]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Iron]]		[[Category: Iron]]

OCA at 06:53, 8 May 2013

OCA — Wed, 08 May 2013 06:53:14 GMT

←Older revision		Revision as of 06:53, 8 May 2013
Line 1:		Line 1:
-	[[Image:4ixr.png\|left\|200px]]
-
	{{STRUCTURE_4ixr\| PDB=4ixr \| SCENE= }}		{{STRUCTURE_4ixr\| PDB=4ixr \| SCENE= }}
-
	===RT fs X-ray diffraction of Photosystem II, first illuminated state===		===RT fs X-ray diffraction of Photosystem II, first illuminated state===
-
	{{ABSTRACT_PUBMED_23413188}}		{{ABSTRACT_PUBMED_23413188}}
		+
		+	==Function==
		+	[[http://www.uniprot.org/uniprot/PSBF_THEEB PSBF_THEEB]] This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex (By similarity).[HAMAP-Rule:MF_00643] [[http://www.uniprot.org/uniprot/PSBL_THEEB PSBL_THEEB]] Required for PSII activity (By similarity). [[http://www.uniprot.org/uniprot/PSBJ_THEEB PSBJ_THEEB]] This protein is a component of the reaction center of photosystem II (By similarity). [[http://www.uniprot.org/uniprot/YCF12_THEEB YCF12_THEEB]] A core subunit of photosystem II (PSII).[HAMAP-Rule:MF_01329] [[http://www.uniprot.org/uniprot/PSBU_THEEB PSBU_THEEB]] Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation (By similarity).[HAMAP-Rule:MF_00589] [[http://www.uniprot.org/uniprot/PSBT_THEEB PSBT_THEEB]] Seems to play a role in the dimerization of PSII.<ref>PMID:15653799</ref> [[http://www.uniprot.org/uniprot/PSBI_THEEB PSBI_THEEB]] This protein is a component of the reaction center of photosystem II.[HAMAP-Rule:MF_01316] [[http://www.uniprot.org/uniprot/PSBA1_THEEB PSBA1_THEEB]] This is one of the two reaction center proteins of photosystem II. [[http://www.uniprot.org/uniprot/PSBX_THEEB PSBX_THEEB]] Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.<ref>PMID:11230572</ref> [[http://www.uniprot.org/uniprot/PSBZ_THEEB PSBZ_THEEB]] Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna. May also aid in binding of PsbK, Ycf12 and the oxygen-evolving complex to PSII, at least in vitro.<ref>PMID:17967798</ref> [[http://www.uniprot.org/uniprot/PSBK_THEEB PSBK_THEEB]] This protein is a component of the reaction center of photosystem II.[HAMAP-Rule:MF_00441] [[http://www.uniprot.org/uniprot/PSBO_THEEB PSBO_THEEB]] MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII (By similarity). [[http://www.uniprot.org/uniprot/CY550_THEEB CY550_THEEB]] Low-potential cytochrome c that plays a role in the oxygen-evolving complex of photosystem II. It is not essential for growth under normal conditions but is required under low CO(2) concentrations.[HAMAP-Rule:MF_01378] [[http://www.uniprot.org/uniprot/PSBE_THEEB PSBE_THEEB]] This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex.[HAMAP-Rule:MF_00642]

	==About this Structure==		==About this Structure==
	[[4ixr]] is a 40 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IXR OCA].		[[4ixr]] is a 40 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IXR OCA].
		+
		+	==Reference==
		+	<references group="xtra"/><references/>
	[[Category: Photosystem II]]		[[Category: Photosystem II]]
	[[Category: Thermosynechococcus elongatus]]		[[Category: Thermosynechococcus elongatus]]

OCA at 13:22, 27 February 2013

OCA — Wed, 27 Feb 2013 13:22:31 GMT

←Older revision		Revision as of 13:22, 27 February 2013
Line 1:		Line 1:
-	[[Image:4ixr.~~jpg~~\|left\|200px]]	+	[[Image:4ixr.png\|left\|200px]]

	{{STRUCTURE_4ixr\| PDB=4ixr \| SCENE= }}		{{STRUCTURE_4ixr\| PDB=4ixr \| SCENE= }}
Line 5:		Line 5:
	===RT fs X-ray diffraction of Photosystem II, first illuminated state===		===RT fs X-ray diffraction of Photosystem II, first illuminated state===

		+	{{ABSTRACT_PUBMED_23413188}}

	==About this Structure==		==About this Structure==

OCA at 14:02, 20 February 2013

OCA — Wed, 20 Feb 2013 14:02:55 GMT

←Older revision		Revision as of 14:02, 20 February 2013
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:4ixr.jpg\|left\|200px]]

-	~~The entry~~ 4ixr ~~is ON HOLD~~	+	{{STRUCTURE_4ixr\| PDB=4ixr \| SCENE= }}

-	~~Authors: Kern, J., Alonso~~-Mori, R., Tran, R., Hattne, J., Gildea, R.J., Echols, N., Gloeckner, C., Hellmich, J., Laksmono, H., Sierra, R.G., Lassalle-Kaiser, B., Koroidov, S., Lampe, A., Han, G., Gul, S., DiFiore, D., Milathianaki, D., Fry, A.R., Miahnahri, A., Schafer, D.W., Messerschmidt, M., Seibert, M.M., Koglin, J.E., Sokaras, D., Weng, T.-C., Sellberg, J., Latimer, M.J., Grosse-Kunstleve, R.W., Zwart, P.H., White, W.E., Glatzel, P., Adams, P.D., Bogan, M.J., Williams, G.J., Boutet, S., Messinger, J., Zouni, A., Sauter, N.K., Yachandra, V.K., Bergmann, U., Yano, J.	+	===RT fs X-ray diffraction of Photosystem II, first illuminated state===

-	~~Description~~: ~~RT fs X~~-~~ray diffraction of~~ Photosystem II, ~~first illuminated state~~	+
		+	==About this Structure==
		+	[[4ixr]] is a 40 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IXR OCA].
		+	[[Category: Photosystem II]]
		+	[[Category: Thermosynechococcus elongatus]]
		+	[[Category: Adams, P D.]]
		+	[[Category: Alonso-Mori, R.]]
		+	[[Category: Bergmann, U.]]
		+	[[Category: Bogan, M J.]]
		+	[[Category: Boutet, S.]]
		+	[[Category: DiFiore, D.]]
		+	[[Category: Echols, N.]]
		+	[[Category: Fry, A R.]]
		+	[[Category: Gildea, R J.]]
		+	[[Category: Glatzel, P.]]
		+	[[Category: Gloeckner, C.]]
		+	[[Category: Grosse-Kunstleve, R W.]]
		+	[[Category: Gul, S.]]
		+	[[Category: Han, G.]]
		+	[[Category: Hattne, J.]]
		+	[[Category: Hellmich, J.]]
		+	[[Category: Kern, J.]]
		+	[[Category: Koglin, J E.]]
		+	[[Category: Koroidov, S.]]
		+	[[Category: Laksmono, H.]]
		+	[[Category: Lampe, A.]]
		+	[[Category: Lassalle-Kaiser, B.]]
		+	[[Category: Latimer, M J.]]
		+	[[Category: Messerschmidt, M.]]
		+	[[Category: Messinger, J.]]
		+	[[Category: Miahnahri, A.]]
		+	[[Category: Milathianaki, D.]]
		+	[[Category: Sauter, N K.]]
		+	[[Category: Schafer, D W.]]
		+	[[Category: Seibert, M M.]]
		+	[[Category: Sellberg, J.]]
		+	[[Category: Sierra, R G.]]
		+	[[Category: Sokaras, D.]]
		+	[[Category: Tran, R.]]
		+	[[Category: Weng, T C.]]
		+	[[Category: White, W E.]]
		+	[[Category: Williams, G J.]]
		+	[[Category: Yachandra, V K.]]
		+	[[Category: Yano, J.]]
		+	[[Category: Zouni, A.]]
		+	[[Category: Zwart, P H.]]
		+	[[Category: Electron transport]]
		+	[[Category: Iron]]
		+	[[Category: Manganese]]
		+	[[Category: Membrane complex]]
		+	[[Category: Photosynthesis]]
		+	[[Category: Ps ii]]
		+	[[Category: Ps2]]
		+	[[Category: Reaction center]]
		+	[[Category: Thylakoid membrane]]
		+	[[Category: Transmembrane alpha-helix]]
		+	[[Category: Water oxidation]]

OCA at 10:07, 13 February 2013

OCA — Wed, 13 Feb 2013 10:07:35 GMT

←Older revision		Revision as of 10:07, 13 February 2013
Line 3:		Line 3:
	The entry 4ixr is ON HOLD		The entry 4ixr is ON HOLD

-	Authors: Kern, J., Alonso-Mori, R., Tran. R., Hattne, J., Gildea, R.J., Echols, N., Gloeckner, C., Hellmich, J., Laksmono, H., Sierra, R.G., Lassalle-Kaiser, B., Koroidov, S., Lampe, A., Han, G., Gul, S., DiFiore, D., Milathianaki, D., Fry, A.R., Miahnahri, A., Schafer, D.W., Messerschmidt, M., Seibert, M.M., Koglin, J.E., Sokaras, D., Weng, T.-C., Sellberg, J., Latimer, M.J., Grosse-Kunstleve, R.W., Zwart, P.H., White, W.E., Glatzel, P., Adams, P.D., Bogan, M.J., Williams, G.J., Boutet, S., Messinger, J., Zouni, A., Sauter, N.K., Yachandra, V.K., Bergmann, U., Yano, J.	+	Authors: Kern, J., Alonso-Mori, R., Tran, R., Hattne, J., Gildea, R.J., Echols, N., Gloeckner, C., Hellmich, J., Laksmono, H., Sierra, R.G., Lassalle-Kaiser, B., Koroidov, S., Lampe, A., Han, G., Gul, S., DiFiore, D., Milathianaki, D., Fry, A.R., Miahnahri, A., Schafer, D.W., Messerschmidt, M., Seibert, M.M., Koglin, J.E., Sokaras, D., Weng, T.-C., Sellberg, J., Latimer, M.J., Grosse-Kunstleve, R.W., Zwart, P.H., White, W.E., Glatzel, P., Adams, P.D., Bogan, M.J., Williams, G.J., Boutet, S., Messinger, J., Zouni, A., Sauter, N.K., Yachandra, V.K., Bergmann, U., Yano, J.

	Description: RT fs X-ray diffraction of Photosystem II, first illuminated state		Description: RT fs X-ray diffraction of Photosystem II, first illuminated state

OCA: Protected "4ixr" [edit=sysop:move=sysop]

OCA — Wed, 06 Feb 2013 12:30:48 GMT

Protected "4ixr" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:30, 6 February 2013