4jj3 - Revision history

OCA at 11:16, 24 November 2022

OCA — Thu, 24 Nov 2022 11:16:00 GMT

←Older revision		Revision as of 11:16, 24 November 2022
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	<StructureSection load='4jj3' size='340' side='right'caption='[[4jj3]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='4jj3' size='340' side='right'caption='[[4jj3]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4jj3]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Magmm Magmm~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JJ3 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=4JJ3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4jj3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Magnetococcus_marinus_MC-1 Magnetococcus marinus MC-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JJ3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JJ3 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4jj0\|4jj0]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jj3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jj3 OCA], [https://pdbe.org/4jj3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jj3 RCSB], [https://www.ebi.ac.uk/pdbsum/4jj3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jj3 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=4jj3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jj3 OCA], [~~http~~://pdbe.org/4jj3 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4jj3 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4jj3 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4jj3 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0L9W2_MAGMM A0L9W2_MAGMM]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Magmm~~]]	+	[[Category: Magnetococcus marinus MC-1]]
-	[[Category: Arnoux, P]]	+	[[Category: Arnoux P]]
-	[[Category: Pignol, D]]	+	[[Category: Pignol D]]
-	[[Category: Siponen, M]]	+	[[Category: Siponen M]]
-	~~[[Category: Cytochrome]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Magnetochrome]]~~	+
-	~~[[Category: Pdz~~]]	+

OCA at 06:22, 5 August 2020

OCA — Wed, 05 Aug 2020 06:22:40 GMT

←Older revision		Revision as of 06:22, 5 August 2020
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	==Crystal structure of MamP soaked with iron(II)==		==Crystal structure of MamP soaked with iron(II)==
-	<StructureSection load='4jj3' size='340' side='right' caption='[[4jj3]], [[Resolution\|resolution]] 2.80Å' scene=''>	+	<StructureSection load='4jj3' size='340' side='right'caption='[[4jj3]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4jj3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Magmm Magmm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JJ3 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4JJ3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4jj3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Magmm Magmm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JJ3 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=4JJ3 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4jj0\|4jj0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4jj0\|4jj0]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4jj3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jj3 OCA], [http://pdbe.org/4jj3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4jj3 RCSB], [http://www.ebi.ac.uk/pdbsum/4jj3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4jj3 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=4jj3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jj3 OCA], [http://pdbe.org/4jj3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4jj3 RCSB], [http://www.ebi.ac.uk/pdbsum/4jj3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4jj3 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Magmm]]		[[Category: Magmm]]
	[[Category: Arnoux, P]]		[[Category: Arnoux, P]]

OCA at 07:03, 31 October 2018

OCA — Wed, 31 Oct 2018 07:03:00 GMT

←Older revision		Revision as of 07:03, 31 October 2018
Line 1:		Line 1:

-	==Crystal structure of MamP ~~in complex~~ with iron(II)==	+	==Crystal structure of MamP soaked with iron(II)==
	<StructureSection load='4jj3' size='340' side='right' caption='[[4jj3]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='4jj3' size='340' side='right' caption='[[4jj3]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4jj3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Magsm Magsm~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JJ3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JJ3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4jj3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Magmm Magmm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JJ3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JJ3 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4jj0\|4jj0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4jj0\|4jj0]]</td></tr>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Magsm~~]]	+	[[Category: Magmm]]
	[[Category: Arnoux, P]]		[[Category: Arnoux, P]]
	[[Category: Pignol, D]]		[[Category: Pignol, D]]

OCA at 14:25, 4 August 2016

OCA — Thu, 04 Aug 2016 14:25:29 GMT

←Older revision		Revision as of 14:25, 4 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of MamP in complex with iron(II)==		==Crystal structure of MamP in complex with iron(II)==
	<StructureSection load='4jj3' size='340' side='right' caption='[[4jj3]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='4jj3' size='340' side='right' caption='[[4jj3]], [[Resolution\|resolution]] 2.80Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4jj0\|4jj0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4jj0\|4jj0]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jj3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jj3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4jj3 RCSB], [http://www.ebi.ac.uk/pdbsum/4jj3 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jj3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jj3 OCA], [http://pdbe.org/4jj3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4jj3 RCSB], [http://www.ebi.ac.uk/pdbsum/4jj3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4jj3 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4jj3" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 15:37, 21 December 2014

OCA — Sun, 21 Dec 2014 15:37:33 GMT

←Older revision		Revision as of 15:37, 21 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_4jj3~~\| ~~PDB~~=4jj3 \| ~~SCENE~~= }}	+	==Crystal structure of MamP in complex with iron(II)==
-	===~~Crystal~~ structure of MamP in ~~complex~~ with iron(II)~~===~~	+	<StructureSection load='4jj3' size='340' side='right' caption='[[4jj3]], [[Resolution\|resolution]] 2.80Å' scene=''>
-	~~{{ABSTRACT_PUBMED_24097349}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4jj3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Magsm Magsm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JJ3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JJ3 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4jj0\|4jj0]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jj3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jj3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4jj3 RCSB], [http://www.ebi.ac.uk/pdbsum/4jj3 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Magnetotactic bacteria align along the Earth's magnetic field using an organelle called the magnetosome, a biomineralized magnetite (Fe(II)Fe(III)2O4) or greigite (Fe(II)Fe(III)2S4) crystal embedded in a lipid vesicle. Although the need for both iron(II) and iron(III) is clear, little is known about the biological mechanisms controlling their ratio. Here we present the structure of the magnetosome-associated protein MamP and find that it is built on a unique arrangement of a self-plugged PDZ domain fused to two magnetochrome domains, defining a new class of c-type cytochrome exclusively found in magnetotactic bacteria. Mutational analysis, enzyme kinetics, co-crystallization with iron(II) and an in vitro MamP-assisted magnetite production assay establish MamP as an iron oxidase that contributes to the formation of iron(III) ferrihydrite eventually required for magnetite crystal growth in vivo. These results demonstrate the molecular mechanisms of iron management taking place inside the magnetosome and highlight the role of magnetochrome in iron biomineralization.

-	~~==About this Structure==~~	+	Structural insight into magnetochrome-mediated magnetite biomineralization.,Siponen MI, Legrand P, Widdrat M, Jones SR, Zhang WJ, Chang MC, Faivre D, Arnoux P, Pignol D Nature. 2013 Oct 31;502(7473):681-4. doi: 10.1038/nature12573. Epub 2013 Oct 6. PMID:24097349<ref>PMID:24097349</ref>
-	~~[[4jj3]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Magsm Magsm]~~. ~~Full crystallographic information is available from [http~~:/~~/oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=4JJ3 OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:024097349</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Magsm]]		[[Category: Magsm]]
-	[[Category: Arnoux, P.]]	+	[[Category: Arnoux, P]]
-	[[Category: Pignol, D.]]	+	[[Category: Pignol, D]]
-	[[Category: Siponen, M.]]	+	[[Category: Siponen, M]]
	[[Category: Cytochrome]]		[[Category: Cytochrome]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Magnetochrome]]		[[Category: Magnetochrome]]
	[[Category: Pdz]]		[[Category: Pdz]]

OCA at 06:45, 13 November 2013

OCA — Wed, 13 Nov 2013 06:45:12 GMT

←Older revision		Revision as of 06:45, 13 November 2013
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	{{STRUCTURE_4jj3\| PDB=4jj3 \| SCENE= }}		{{STRUCTURE_4jj3\| PDB=4jj3 \| SCENE= }}
	===Crystal structure of MamP in complex with iron(II)===		===Crystal structure of MamP in complex with iron(II)===
		+	{{ABSTRACT_PUBMED_24097349}}

	==About this Structure==		==About this Structure==
-	[[4jj3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Magnetococcus_marinus_mc-1 Magnetococcus marinus mc-1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JJ3 OCA].	+	[[4jj3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Magsm Magsm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JJ3 OCA].
-	[[Category: ~~Magnetococcus marinus mc-1~~]]	+
		+	==Reference==
		+	<ref group="xtra">PMID:024097349</ref><references group="xtra"/><references/>
		+	[[Category: Magsm]]
	[[Category: Arnoux, P.]]		[[Category: Arnoux, P.]]
	[[Category: Pignol, D.]]		[[Category: Pignol, D.]]

OCA at 06:38, 10 October 2013

OCA — Thu, 10 Oct 2013 06:38:57 GMT

←Older revision		Revision as of 06:38, 10 October 2013
Line 1:		Line 1:
-	~~'''Unreleased~~ structure~~'''~~	+	{{STRUCTURE_4jj3\| PDB=4jj3 \| SCENE= }}
		+	===Crystal structure of MamP in complex with iron(II)===

-	~~The entry~~ 4jj3 is ~~ON HOLD until Paper Publication~~	+	==About this Structure==
-		+	[[4jj3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Magnetococcus_marinus_mc-1 Magnetococcus marinus mc-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JJ3 OCA].
-	~~Authors~~: ~~Siponen~~, M., Pignol, D., ~~Arnoux, P~~.	+	[[Category: Magnetococcus marinus mc-1]]
-		+	[[Category: Arnoux, P.]]
-	~~Description~~: ~~Crystal structure of MamP in complex with iron(II)~~	+	[[Category: Pignol, D.]]
		+	[[Category: Siponen, M.]]
		+	[[Category: Cytochrome]]
		+	[[Category: Electron transport]]
		+	[[Category: Magnetochrome]]
		+	[[Category: Pdz]]

OCA at 00:54, 4 April 2013

OCA — Thu, 04 Apr 2013 00:54:44 GMT

←Older revision		Revision as of 00:54, 4 April 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4jj3 is ON HOLD	+	The entry 4jj3 is ON HOLD until Paper Publication

	Authors: Siponen, M., Pignol, D., Arnoux, P.		Authors: Siponen, M., Pignol, D., Arnoux, P.

	Description: Crystal structure of MamP in complex with iron(II)		Description: Crystal structure of MamP in complex with iron(II)

OCA: Protected "4jj3" [edit=sysop:move=sysop]

OCA — Wed, 13 Mar 2013 10:03:40 GMT

Protected "4jj3" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:03, 13 March 2013

OCA: New page: '''Unreleased structure''' The entry 4jj3 is ON HOLD Authors: Siponen, M., Pignol, D., Arnoux, P. Description: Crystal structure of MamP in complex with iron(II)

OCA — Wed, 13 Mar 2013 10:03:39 GMT

New page: '''Unreleased structure''' The entry 4jj3 is ON HOLD Authors: Siponen, M., Pignol, D., Arnoux, P. Description: Crystal structure of MamP in complex with iron(II)

New page

'''Unreleased structure'''

The entry 4jj3 is ON HOLD

Authors: Siponen, M., Pignol, D., Arnoux, P.

Description: Crystal structure of MamP in complex with iron(II)