4jp6 - Revision history

OCA at 11:28, 24 November 2022

OCA — Thu, 24 Nov 2022 11:28:57 GMT

←Older revision		Revision as of 11:28, 24 November 2022
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	<StructureSection load='4jp6' size='340' side='right'caption='[[4jp6]], [[Resolution\|resolution]] 1.00Å' scene=''>		<StructureSection load='4jp6' size='340' side='right'caption='[[4jp6]], [[Resolution\|resolution]] 1.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4jp6]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Carica_papaya Carica papaya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JP6 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4JP6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4jp6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Carica_papaya Carica papaya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JP6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JP6 FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4jp7\|4jp7]]~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jp6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jp6 OCA], [https://pdbe.org/4jp6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jp6 RCSB], [https://www.ebi.ac.uk/pdbsum/4jp6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jp6 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4jp6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jp6 OCA], [~~http~~://pdbe.org/4jp6 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4jp6 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4jp6 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4jp6 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/U5HK42_CARPA U5HK42_CARPA]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	[[Category: Carica papaya]]		[[Category: Carica papaya]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Wintjens, R]]	+	[[Category: Wintjens R]]
-	[[Category: Wohlkonig, A]]	+	[[Category: Wohlkonig A]]
-	~~[[Category: Barwin family]]~~	+
-	~~[[Category: Double-psi beta barrel]]~~	+
-	~~[[Category: Pathogenesis-related protein of family 4]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 08:55, 3 April 2019

OCA — Wed, 03 Apr 2019 08:55:04 GMT

←Older revision		Revision as of 08:55, 3 April 2019
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	==High resolution structure of a papaya barwin-like protein==		==High resolution structure of a papaya barwin-like protein==
-	<StructureSection load='4jp6' size='340' side='right' caption='[[4jp6]], [[Resolution\|resolution]] 1.00Å' scene=''>	+	<StructureSection load='4jp6' size='340' side='right'caption='[[4jp6]], [[Resolution\|resolution]] 1.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4jp6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Carica_papaya Carica papaya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JP6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JP6 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4jp6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Carica_papaya Carica papaya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JP6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JP6 FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Carica papaya]]		[[Category: Carica papaya]]
		+	[[Category: Large Structures]]
	[[Category: Wintjens, R]]		[[Category: Wintjens, R]]
	[[Category: Wohlkonig, A]]		[[Category: Wohlkonig, A]]

OCA at 23:01, 4 August 2016

OCA — Thu, 04 Aug 2016 23:01:04 GMT

←Older revision		Revision as of 23:01, 4 August 2016
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		+
	==High resolution structure of a papaya barwin-like protein==		==High resolution structure of a papaya barwin-like protein==
	<StructureSection load='4jp6' size='340' side='right' caption='[[4jp6]], [[Resolution\|resolution]] 1.00Å' scene=''>		<StructureSection load='4jp6' size='340' side='right' caption='[[4jp6]], [[Resolution\|resolution]] 1.00Å' scene=''>
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	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4jp7\|4jp7]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4jp7\|4jp7]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jp6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jp6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4jp6 RCSB], [http://www.ebi.ac.uk/pdbsum/4jp6 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jp6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jp6 OCA], [http://pdbe.org/4jp6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4jp6 RCSB], [http://www.ebi.ac.uk/pdbsum/4jp6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4jp6 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4jp6" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 18:05, 21 December 2014

OCA — Sun, 21 Dec 2014 18:05:23 GMT

←Older revision		Revision as of 18:05, 21 December 2014
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-	~~{{STRUCTURE_4jp6\| PDB=4jp6 \| SCENE= }}~~	+	==High resolution structure of a papaya barwin-like protein==
-	===High resolution structure of a papaya barwin-like protein===	+	<StructureSection load='4jp6' size='340' side='right' caption='[[4jp6]], [[Resolution\|resolution]] 1.00Å' scene=''>
-	~~{{ABSTRACT_PUBMED_24100320}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4jp6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Carica_papaya Carica papaya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JP6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JP6 FirstGlance]. <br>
		+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4jp7\|4jp7]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jp6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jp6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4jp6 RCSB], [http://www.ebi.ac.uk/pdbsum/4jp6 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The first crystal structure of a barwin-like protein, named carwin, has been determined at high resolution by single-wavelength anomalous diffraction (SAD) phasing using the six intrinsic S atoms present in the protein. The barwin-like protein was purified from Carica papaya latex and crystallized in the orthorhombic space group P212121. Using in-house Cu Kalpha X-ray radiation, 16 cumulative diffraction data sets were acquired to increase the signal-to-noise level and thereby the anomalous scattering signal. A sequence-database search on the papaya genome identified two carwin isoforms of 122 residues in length, both containing six S atoms that yield an estimated Bijvoet ratio of 0.93% at 1.54 A wavelength. A systematic analysis of data quality and redundancy was performed to assess the capacity to locate the S atoms and to phase the data. It was observed that the crystal decay was low during data collection and that successful S-SAD phasing could be obtained with a relatively low data multiplicity of about 7. Using a synchrotron source, high-resolution data (1 A) were collected from two different crystal forms of the papaya latex carwin. The refined structures showed a central beta-barrel of six strands surrounded by several alpha-helices and loops. The beta-barrel of carwin appears to be a common structural module that is shared within several other unrelated proteins. Finally, the possible biological function of the protein is discussed.

-	~~==About this Structure==~~	+	High-resolution structure of a papaya plant-defence barwin-like protein solved by in-house sulfur-SAD phasing.,Huet J, Teinkela Mbosso EJ, Soror S, Meyer F, Looze Y, Wintjens R, Wohlkonig A Acta Crystallogr D Biol Crystallogr. 2013 Oct;69(Pt 10):2017-26. doi:, 10.1107/S0907444913018015. Epub 2013 Sep 20. PMID:24100320<ref>PMID:24100320</ref>
-	~~[[4jp6]] is a 1 chain~~ structure ~~with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Carica_papaya Carica papaya]~~. ~~Full crystallographic information is available from [http~~:/~~/oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=4JP6 OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:024100320</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Carica papaya]]		[[Category: Carica papaya]]
-	[[Category: Wintjens, R.]]	+	[[Category: Wintjens, R]]
-	[[Category: Wohlkonig, A.]]	+	[[Category: Wohlkonig, A]]
	[[Category: Barwin family]]		[[Category: Barwin family]]
	[[Category: Double-psi beta barrel]]		[[Category: Double-psi beta barrel]]
	[[Category: Pathogenesis-related protein of family 4]]		[[Category: Pathogenesis-related protein of family 4]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 07:03, 15 January 2014

OCA — Wed, 15 Jan 2014 07:03:24 GMT

←Older revision		Revision as of 07:03, 15 January 2014
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	{{STRUCTURE_4jp6\| PDB=4jp6 \| SCENE= }}		{{STRUCTURE_4jp6\| PDB=4jp6 \| SCENE= }}
	===High resolution structure of a papaya barwin-like protein===		===High resolution structure of a papaya barwin-like protein===
		+	{{ABSTRACT_PUBMED_24100320}}

	==About this Structure==		==About this Structure==
	[[4jp6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Carica_papaya Carica papaya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JP6 OCA].		[[4jp6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Carica_papaya Carica papaya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JP6 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:024100320</ref><references group="xtra"/><references/>
	[[Category: Carica papaya]]		[[Category: Carica papaya]]
	[[Category: Wintjens, R.]]		[[Category: Wintjens, R.]]

OCA at 07:34, 2 October 2013

OCA — Wed, 02 Oct 2013 07:34:55 GMT

←Older revision		Revision as of 07:34, 2 October 2013
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-	~~'''Unreleased~~ structure~~'''~~	+	{{STRUCTURE_4jp6\| PDB=4jp6 \| SCENE= }}
		+	===High resolution structure of a papaya barwin-like protein===

-	~~The entry~~ 4jp6 is ~~ON HOLD until Paper Publication~~	+	==About this Structure==
-		+	[[4jp6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Carica_papaya Carica papaya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JP6 OCA].
-	~~Authors~~: ~~Wohlkonig, A.,~~ Wintjens, R.	+	[[Category: Carica papaya]]
-		+	[[Category: Wintjens, R.]]
-	~~Description~~: ~~High resolution structure of a papaya barwin~~-~~like~~ protein	+	[[Category: Wohlkonig, A.]]
		+	[[Category: Barwin family]]
		+	[[Category: Double-psi beta barrel]]
		+	[[Category: Pathogenesis-related protein of family 4]]
		+	[[Category: Unknown function]]

OCA at 07:07, 2 May 2013

OCA — Thu, 02 May 2013 07:07:58 GMT

←Older revision		Revision as of 07:07, 2 May 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4jp6 is ON HOLD	+	The entry 4jp6 is ON HOLD until Paper Publication

	Authors: Wohlkonig, A., Wintjens, R.		Authors: Wohlkonig, A., Wintjens, R.

	Description: High resolution structure of a papaya barwin-like protein		Description: High resolution structure of a papaya barwin-like protein

OCA: Protected "4jp6" [edit=sysop:move=sysop]

OCA — Wed, 27 Mar 2013 08:21:22 GMT

Protected "4jp6" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:21, 27 March 2013

OCA: New page: '''Unreleased structure''' The entry 4jp6 is ON HOLD Authors: Wohlkonig, A., Wintjens, R. Description: High resolution structure of a papaya barwin-like protein

OCA — Wed, 27 Mar 2013 08:21:21 GMT

New page: '''Unreleased structure''' The entry 4jp6 is ON HOLD Authors: Wohlkonig, A., Wintjens, R. Description: High resolution structure of a papaya barwin-like protein

New page

'''Unreleased structure'''

The entry 4jp6 is ON HOLD

Authors: Wohlkonig, A., Wintjens, R.

Description: High resolution structure of a papaya barwin-like protein