4kgn - Revision history

OCA at 21:54, 5 August 2016

OCA — Fri, 05 Aug 2016 21:54:59 GMT

←Older revision		Revision as of 21:54, 5 August 2016
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		+
	==Crystal structure of a tRNA (cytidine(34)-2'-O)-methyltransferase bound to S-adenosyl homocysteine==		==Crystal structure of a tRNA (cytidine(34)-2'-O)-methyltransferase bound to S-adenosyl homocysteine==
	<StructureSection load='4kgn' size='340' side='right' caption='[[4kgn]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='4kgn' size='340' side='right' caption='[[4kgn]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4kgn]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Burkholderia_pseudomallei_1710b Burkholderia pseudomallei 1710b~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KGN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4KGN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4kgn]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Burp1 Burp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KGN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4KGN FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3e5y\|3e5y]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3e5y\|3e5y]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BURPS1710b_0668, trmL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=320372 ~~Burkholderia pseudomallei 1710b~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BURPS1710b_0668, trmL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=320372 BURP1])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/tRNA_(cytidine(34)-2'-O)-methyltransferase tRNA (cytidine(34)-2'-O)-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.207 2.1.1.207] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/tRNA_(cytidine(34)-2'-O)-methyltransferase tRNA (cytidine(34)-2'-O)-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.207 2.1.1.207] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4kgn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kgn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4kgn RCSB], [http://www.ebi.ac.uk/pdbsum/4kgn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4kgn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kgn OCA], [http://pdbe.org/4kgn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4kgn RCSB], [http://www.ebi.ac.uk/pdbsum/4kgn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4kgn ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Burkholderia pseudomallei 1710b~~]]	+	[[Category: Burp1]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Half-site occupancy]]		[[Category: Half-site occupancy]]

OCA at 06:09, 25 December 2014

OCA — Thu, 25 Dec 2014 06:09:31 GMT

←Older revision		Revision as of 06:09, 25 December 2014
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-	~~{{STRUCTURE_4kgn\| PDB=4kgn \| SCENE= }}~~	+	==Crystal structure of a tRNA (cytidine(34)-2'-O)-methyltransferase bound to S-adenosyl homocysteine==
-	===Crystal structure of a tRNA (cytidine(34)-2'-O)-methyltransferase bound to S-adenosyl homocysteine===	+	<StructureSection load='4kgn' size='340' side='right' caption='[[4kgn]], [[Resolution\|resolution]] 2.15Å' scene=''>
-		+	== Structural highlights ==
-	==Function==	+	<table><tr><td colspan='2'>[[4kgn]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_pseudomallei_1710b Burkholderia pseudomallei 1710b]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KGN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4KGN FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3e5y\|3e5y]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BURPS1710b_0668, trmL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=320372 Burkholderia pseudomallei 1710b])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/tRNA_(cytidine(34)-2'-O)-methyltransferase tRNA (cytidine(34)-2'-O)-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.207 2.1.1.207] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4kgn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kgn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4kgn RCSB], [http://www.ebi.ac.uk/pdbsum/4kgn PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
	[[http://www.uniprot.org/uniprot/Q3JWH1_BURP1 Q3JWH1_BURP1]] Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide (By similarity).[HAMAP-Rule:MF_01885]		[[http://www.uniprot.org/uniprot/Q3JWH1_BURP1 Q3JWH1_BURP1]] Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide (By similarity).[HAMAP-Rule:MF_01885]

-	==~~About this Structure~~==	+	==See Also==
-	[[~~4kgn~~]] ~~is a 8 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Burkholderia_pseudomallei_1710b Burkholderia pseudomallei 1710b]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KGN OCA].~~	+	*[[TRNA methyltransferase\|TRNA methyltransferase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Burkholderia pseudomallei 1710b]]		[[Category: Burkholderia pseudomallei 1710b]]
-	[[Category: ~~SSGCID, Seattle~~ Structural ~~Genomics Center for Infectious Disease.~~]]	+	[[Category: Structural genomic]]
	[[Category: Half-site occupancy]]		[[Category: Half-site occupancy]]
	[[Category: National institute for allergy and infectious disease]]		[[Category: National institute for allergy and infectious disease]]
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	[[Category: Sah]]		[[Category: Sah]]
	[[Category: Sam]]		[[Category: Sam]]
-	[[Category: Seattle structural genomics center for infectious disease]]
	[[Category: Ssgcid]]		[[Category: Ssgcid]]
-	[[Category: Structural genomic]]
	[[Category: Transferase]]		[[Category: Transferase]]
	[[Category: Trefoil protein knot]]		[[Category: Trefoil protein knot]]
	[[Category: Trna methyltransferase]]		[[Category: Trna methyltransferase]]

OCA: Protected "4kgn" [edit=sysop:move=sysop]

OCA — Wed, 08 May 2013 08:00:16 GMT

Protected "4kgn" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:00, 8 May 2013

OCA: New page: {{STRUCTURE_4kgn| PDB=4kgn | SCENE= }} ===Crystal structure of a tRNA (cytidine(34)-2'-O)-methyltransferase bound to S-adenosyl homocysteine=== ==Function== [[http://www.uniprot.org/...

OCA — Wed, 08 May 2013 08:00:12 GMT

New page: {{STRUCTURE_4kgn| PDB=4kgn | SCENE= }} ===Crystal structure of a tRNA (cytidine(34)-2'-O)-methyltransferase bound to S-adenosyl homocysteine=== ==Function== [[http://www.uniprot.org/...

New page

{{STRUCTURE_4kgn| PDB=4kgn | SCENE= }}
===Crystal structure of a tRNA (cytidine(34)-2'-O)-methyltransferase bound to S-adenosyl homocysteine===

==Function==
[[http://www.uniprot.org/uniprot/Q3JWH1_BURP1 Q3JWH1_BURP1]] Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide (By similarity).[HAMAP-Rule:MF_01885]

==About this Structure==
[[4kgn]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_pseudomallei_1710b Burkholderia pseudomallei 1710b]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KGN OCA].
[[Category: Burkholderia pseudomallei 1710b]]
[[Category: SSGCID, Seattle Structural Genomics Center for Infectious Disease.]]
[[Category: Half-site occupancy]]
[[Category: National institute for allergy and infectious disease]]
[[Category: Niaid]]
[[Category: S-adenosyl-methionine-dependent]]
[[Category: S-adenosylhomocysteine]]
[[Category: Sah]]
[[Category: Sam]]
[[Category: Seattle structural genomics center for infectious disease]]
[[Category: Ssgcid]]
[[Category: Structural genomic]]
[[Category: Transferase]]
[[Category: Trefoil protein knot]]
[[Category: Trna methyltransferase]]