4l5l - Revision history

OCA at 08:55, 20 March 2024

OCA — Wed, 20 Mar 2024 08:55:12 GMT

←Older revision		Revision as of 08:55, 20 March 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4l5l]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clonorchis_sinensis Clonorchis sinensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L5L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4L5L FirstGlance]. <br>		<table><tr><td colspan='2'>[[4l5l]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clonorchis_sinensis Clonorchis sinensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L5L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4L5L FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4l5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4l5l OCA], [https://pdbe.org/4l5l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4l5l RCSB], [https://www.ebi.ac.uk/pdbsum/4l5l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4l5l ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4l5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4l5l OCA], [https://pdbe.org/4l5l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4l5l RCSB], [https://www.ebi.ac.uk/pdbsum/4l5l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4l5l ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/Q25595_CLOSI Q25595_CLOSI]		[https://www.uniprot.org/uniprot/Q25595_CLOSI Q25595_CLOSI]
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The crystal structures of CsGST in two different space groups revealed that Asp26 and His79 coordinate a zinc ion. In one space group, His46 of an adjacent molecule participates in the coordination within 2.0A. In the other space group, Asp26, His79 and a water molecule coordinate a zinc ion. The CsGST-D26H structure showed that four histidine residues - His26 and His79 from one molecule and the same residues from a symmetry-related neighboring molecule - coordinate a zinc ion. The coordinated zinc ions are located between two molecules and mediate molecular contacts within the crystal.
-
-	Crystal structures of 26kDa Clonorchis sinensis glutathione S-transferase reveal zinc binding and putative metal binding.,Han YH, Hong SJ, Cheong HK, Chung YJ Biochem Biophys Res Commun. 2013 Aug 23;438(2):457-61. doi:, 10.1016/j.bbrc.2013.07.102. Epub 2013 Jul 31. PMID:23916611<ref>PMID:23916611</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 4l5l" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 09:33, 7 December 2022

OCA — Wed, 07 Dec 2022 09:33:52 GMT

←Older revision		Revision as of 09:33, 7 December 2022
Line 3:		Line 3:
	<StructureSection load='4l5l' size='340' side='right'caption='[[4l5l]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='4l5l' size='340' side='right'caption='[[4l5l]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4l5l]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Closi Closi~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L5L OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4L5L FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4l5l]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clonorchis_sinensis Clonorchis sinensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L5L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4L5L FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3iso\|3iso]], [[4l5o\|4l5o]]~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4l5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4l5l OCA], [https://pdbe.org/4l5l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4l5l RCSB], [https://www.ebi.ac.uk/pdbsum/4l5l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4l5l ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4l5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4l5l OCA], [~~http~~://pdbe.org/4l5l PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4l5l RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4l5l PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4l5l ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q25595_CLOSI Q25595_CLOSI]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Closi~~]]	+	[[Category: Clonorchis sinensis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chung~~, Y J~~]]	+	[[Category: Chung YJ]]
-	[[Category: Han~~, Y H]]~~	+	[[Category: Han YH]]
-	~~[[Category: Gsh binding]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 04:57, 13 February 2020

OCA — Thu, 13 Feb 2020 04:57:03 GMT

←Older revision		Revision as of 04:57, 13 February 2020
Line 1:		Line 1:

	==Crystal structure of 26 kDa GST of Clonorchis sinensis in P212121 symmetry==		==Crystal structure of 26 kDa GST of Clonorchis sinensis in P212121 symmetry==
-	<StructureSection load='4l5l' size='340' side='right' caption='[[4l5l]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='4l5l' size='340' side='right'caption='[[4l5l]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4l5l]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Closi Closi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L5L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4L5L FirstGlance]. <br>		<table><tr><td colspan='2'>[[4l5l]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Closi Closi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L5L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4L5L FirstGlance]. <br>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Closi]]		[[Category: Closi]]
		+	[[Category: Large Structures]]
	[[Category: Chung, Y J]]		[[Category: Chung, Y J]]
	[[Category: Han, Y H]]		[[Category: Han, Y H]]
	[[Category: Gsh binding]]		[[Category: Gsh binding]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 22:17, 5 August 2016

OCA — Fri, 05 Aug 2016 22:17:14 GMT

←Older revision		Revision as of 22:17, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of 26 kDa GST of Clonorchis sinensis in P212121 symmetry==		==Crystal structure of 26 kDa GST of Clonorchis sinensis in P212121 symmetry==
	<StructureSection load='4l5l' size='340' side='right' caption='[[4l5l]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='4l5l' size='340' side='right' caption='[[4l5l]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4l5l]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Clonorchis_sinensis Clonorchis sinensis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L5L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4L5L FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4l5l]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Closi Closi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L5L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4L5L FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3iso\|3iso]], [[4l5o\|4l5o]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3iso\|3iso]], [[4l5o\|4l5o]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4l5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4l5l OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4l5l RCSB], [http://www.ebi.ac.uk/pdbsum/4l5l PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4l5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4l5l OCA], [http://pdbe.org/4l5l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4l5l RCSB], [http://www.ebi.ac.uk/pdbsum/4l5l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4l5l ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4l5l" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Clonorchis sinensis~~]]	+	[[Category: Closi]]
	[[Category: Chung, Y J]]		[[Category: Chung, Y J]]
	[[Category: Han, Y H]]		[[Category: Han, Y H]]
	[[Category: Gsh binding]]		[[Category: Gsh binding]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 15:07, 21 December 2014

OCA — Sun, 21 Dec 2014 15:07:13 GMT

←Older revision		Revision as of 15:07, 21 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_4l5l\| PDB=4l5l \| SCENE= }}~~	+	==Crystal structure of 26 kDa GST of Clonorchis sinensis in P212121 symmetry==
-	===Crystal structure of 26 kDa GST of Clonorchis sinensis in P212121 symmetry===	+	<StructureSection load='4l5l' size='340' side='right' caption='[[4l5l]], [[Resolution\|resolution]] 2.20Å' scene=''>
-	~~{{ABSTRACT_PUBMED_23916611}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4l5l]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clonorchis_sinensis Clonorchis sinensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L5L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4L5L FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3iso\|3iso]], [[4l5o\|4l5o]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4l5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4l5l OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4l5l RCSB], [http://www.ebi.ac.uk/pdbsum/4l5l PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structures of CsGST in two different space groups revealed that Asp26 and His79 coordinate a zinc ion. In one space group, His46 of an adjacent molecule participates in the coordination within 2.0A. In the other space group, Asp26, His79 and a water molecule coordinate a zinc ion. The CsGST-D26H structure showed that four histidine residues - His26 and His79 from one molecule and the same residues from a symmetry-related neighboring molecule - coordinate a zinc ion. The coordinated zinc ions are located between two molecules and mediate molecular contacts within the crystal.

-	~~==About this Structure==~~	+	Crystal structures of 26kDa Clonorchis sinensis glutathione S-transferase reveal zinc binding and putative metal binding.,Han YH, Hong SJ, Cheong HK, Chung YJ Biochem Biophys Res Commun. 2013 Aug 23;438(2):457-61. doi:, 10.1016/j.bbrc.2013.07.102. Epub 2013 Jul 31. PMID:23916611<ref>PMID:23916611</ref>
-	~~[[4l5l]] is a~~ 2 ~~chain structure with sequence from [http~~:~~//en~~.~~wikipedia~~.~~org~~/~~wiki/Clonorchis_sinensis Clonorchis sinensis]~~. ~~Full crystallographic information is available from [http://oca~~.~~weizmann~~.ac.~~il/oca-bin/ocashort?id=4L5L OCA]~~.	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:023916611</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Clonorchis sinensis]]		[[Category: Clonorchis sinensis]]
-	[[Category: Chung, Y J.]]	+	[[Category: Chung, Y J]]
-	[[Category: Han, Y H.]]	+	[[Category: Han, Y H]]
	[[Category: Gsh binding]]		[[Category: Gsh binding]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 10:42, 4 September 2013

OCA — Wed, 04 Sep 2013 10:42:06 GMT

←Older revision		Revision as of 10:42, 4 September 2013
Line 1:		Line 1:
-	~~'''Unreleased~~ structure~~'''~~	+	{{STRUCTURE_4l5l\| PDB=4l5l \| SCENE= }}
		+	===Crystal structure of 26 kDa GST of Clonorchis sinensis in P212121 symmetry===
		+	{{ABSTRACT_PUBMED_23916611}}

-	~~The entry~~ 4l5l is ~~ON HOLD~~	+	==About this Structure==
		+	[[4l5l]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clonorchis_sinensis Clonorchis sinensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L5L OCA].

-	~~Authors~~: Chung, Y.J., Han, Y.H.	+	==Reference==
-		+	<ref group="xtra">PMID:023916611</ref><references group="xtra"/><references/>
-	~~Description~~: ~~Crystal structure of 26 kDa GST of Clonorchis sinensis in P212121 symmetry~~	+	[[Category: Clonorchis sinensis]]
		+	[[Category: Chung, Y J.]]
		+	[[Category: Han, Y H.]]
		+	[[Category: Gsh binding]]
		+	[[Category: Transferase]]

OCA: Protected "4l5l" [edit=sysop:move=sysop]

OCA — Wed, 19 Jun 2013 12:33:46 GMT

Protected "4l5l" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:33, 19 June 2013

OCA: New page: '''Unreleased structure''' The entry 4l5l is ON HOLD Authors: Chung, Y.J., Han, Y.H. Description: Crystal structure of 26 kDa GST of Clonorchis sinensis in P212121 symmetry

OCA — Wed, 19 Jun 2013 12:33:45 GMT

New page: '''Unreleased structure''' The entry 4l5l is ON HOLD Authors: Chung, Y.J., Han, Y.H. Description: Crystal structure of 26 kDa GST of Clonorchis sinensis in P212121 symmetry

New page

'''Unreleased structure'''

The entry 4l5l is ON HOLD

Authors: Chung, Y.J., Han, Y.H.

Description: Crystal structure of 26 kDa GST of Clonorchis sinensis in P212121 symmetry