4m4o - Revision history

OCA at 16:31, 20 September 2023

OCA — Wed, 20 Sep 2023 16:31:48 GMT

←Older revision		Revision as of 16:31, 20 September 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4m4o]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M4O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4M4O FirstGlance]. <br>		<table><tr><td colspan='2'>[[4m4o]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M4O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4M4O FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4m4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m4o OCA], [https://pdbe.org/4m4o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4m4o RCSB], [https://www.ebi.ac.uk/pdbsum/4m4o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4m4o ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4m4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m4o OCA], [https://pdbe.org/4m4o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4m4o RCSB], [https://www.ebi.ac.uk/pdbsum/4m4o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4m4o ProSAT]</span></td></tr>
	</table>		</table>

OCA at 10:54, 21 December 2022

OCA — Wed, 21 Dec 2022 10:54:55 GMT

←Older revision		Revision as of 10:54, 21 December 2022
Line 1:		Line 1:

	==Crystal structure of the aptamer minE-lysozyme complex==		==Crystal structure of the aptamer minE-lysozyme complex==
-	<StructureSection load='4m4o' size='340' side='right' caption='[[4m4o]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='4m4o' size='340' side='right'caption='[[4m4o]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4m4o]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Chick Chick~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M4O OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4M4O FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4m4o]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M4O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4M4O FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LYZ, LYZ1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9031 CHICK])</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4m4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m4o OCA], [https://pdbe.org/4m4o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4m4o RCSB], [https://www.ebi.ac.uk/pdbsum/4m4o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4m4o ProSAT]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4m4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m4o OCA], [~~http~~://pdbe.org/4m4o PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4m4o RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4m4o PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4m4o ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>	+	[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>

	==See Also==		==See Also==
Line 18:		Line 16:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Chick~~]]	+	[[Category: Gallus gallus]]
-	[[Category: ~~Lysozyme~~]]	+	[[Category: Large Structures]]
-	[[Category: Almo~~, S C~~]]	+	[[Category: Almo SC]]
-	[[Category: Girvin, M]]	+	[[Category: Girvin M]]
-	[[Category: Malashkevich~~, V N]]~~	+	[[Category: Malashkevich VN]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Padlan FC]]
-	[[Category: Padlan~~, F C~~]]	+	[[Category: Toro R]]
-	[[Category: Toro, R]]	+
-	~~[[Category: Hydrolase-rna complex]]~~	+
-	~~[[Category: Nysgrc]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Protein-rna complex]]~~	+
-	~~[[Category: Psi-biology~~]]	+

OCA at 12:17, 5 August 2016

OCA — Fri, 05 Aug 2016 12:17:14 GMT

←Older revision		Revision as of 12:17, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of the aptamer minE-lysozyme complex==		==Crystal structure of the aptamer minE-lysozyme complex==
	<StructureSection load='4m4o' size='340' side='right' caption='[[4m4o]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='4m4o' size='340' side='right' caption='[[4m4o]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 6:		Line 7:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LYZ, LYZ1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9031 CHICK])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LYZ, LYZ1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9031 CHICK])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4m4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m4o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4m4o RCSB], [http://www.ebi.ac.uk/pdbsum/4m4o PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4m4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m4o OCA], [http://pdbe.org/4m4o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4m4o RCSB], [http://www.ebi.ac.uk/pdbsum/4m4o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4m4o ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 02:23, 25 December 2014

OCA — Thu, 25 Dec 2014 02:23:00 GMT

←Older revision		Revision as of 02:23, 25 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4m4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m4o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4m4o RCSB], [http://www.ebi.ac.uk/pdbsum/4m4o PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4m4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m4o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4m4o RCSB], [http://www.ebi.ac.uk/pdbsum/4m4o PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>

	==See Also==		==See Also==
	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]		*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 18:18, 21 December 2014

OCA — Sun, 21 Dec 2014 18:18:31 GMT

←Older revision		Revision as of 18:18, 21 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_4m4o\| PDB=4m4o \| SCENE= }}~~	+	==Crystal structure of the aptamer minE-lysozyme complex==
-	===Crystal structure of the aptamer minE-lysozyme complex===	+	<StructureSection load='4m4o' size='340' side='right' caption='[[4m4o]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4m4o]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Chick Chick]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M4O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4M4O FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LYZ, LYZ1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9031 CHICK])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4m4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m4o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4m4o RCSB], [http://www.ebi.ac.uk/pdbsum/4m4o PDBsum]</span></td></tr>
		+	</table>

-	==~~Function~~==	+	==See Also==
-	[[~~http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK~~]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</~~ref~~>	+	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
-		+	__TOC__
-	~~==About this Structure==~~	+	</StructureSection>
-	[[~~4m4o~~]] ~~is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M4O OCA].~~	+	[[Category: Chick]]
-		+
-	~~==Reference==~~	+
-	~~<references group="xtra"/><references/>~~	+
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
-	[[Category: Almo, S C.]]	+	[[Category: Almo, S C]]
-	[[Category: Girvin, M.]]	+	[[Category: Girvin, M]]
-	[[Category: Malashkevich, V N.]]	+	[[Category: Malashkevich, V N]]
-	[[Category: ~~NYSGRC, New York~~ Structural ~~Genomics Research Consortium.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Padlan, F C.]]	+	[[Category: Padlan, F C]]
-	[[Category: Toro, R.]]	+	[[Category: Toro, R]]
	[[Category: Hydrolase-rna complex]]		[[Category: Hydrolase-rna complex]]
-	[[Category: New york structural genomics research consortium]]
	[[Category: Nysgrc]]		[[Category: Nysgrc]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
	[[Category: Protein-rna complex]]		[[Category: Protein-rna complex]]
	[[Category: Psi-biology]]		[[Category: Psi-biology]]
-	[[Category: Structural genomic]]

OCA at 10:40, 18 December 2013

OCA — Wed, 18 Dec 2013 10:40:07 GMT

←Older revision		Revision as of 10:40, 18 December 2013
Line 1:		Line 1:
-	~~'''Unreleased~~ structure~~'''~~	+	{{STRUCTURE_4m4o\| PDB=4m4o \| SCENE= }}
		+	===Crystal structure of the aptamer minE-lysozyme complex===

-	~~The entry 4m4o is ON HOLD~~	+	==Function==
		+	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>

-	~~Authors~~: ~~Malashkevich, V.N., Padlan, F.C., Toro, R~~.~~, Girvin, M~~.~~, Almo, S~~.C.~~, New York Structural Genomics Research Consortium (NYSGRC)~~	+	==About this Structure==
		+	[[4m4o]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M4O OCA].

-	~~Description~~: ~~Crystal~~ structure ~~of the aptamer minE~~-~~lysozyme~~ complex	+	==Reference==
		+	<references group="xtra"/><references/>
		+	[[Category: Lysozyme]]
		+	[[Category: Almo, S C.]]
		+	[[Category: Girvin, M.]]
		+	[[Category: Malashkevich, V N.]]
		+	[[Category: NYSGRC, New York Structural Genomics Research Consortium.]]
		+	[[Category: Padlan, F C.]]
		+	[[Category: Toro, R.]]
		+	[[Category: Hydrolase-rna complex]]
		+	[[Category: New york structural genomics research consortium]]
		+	[[Category: Nysgrc]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Protein-rna complex]]
		+	[[Category: Psi-biology]]
		+	[[Category: Structural genomic]]

OCA at 07:55, 21 August 2013

OCA — Wed, 21 Aug 2013 07:55:31 GMT

←Older revision		Revision as of 07:55, 21 August 2013
Line 3:		Line 3:
	The entry 4m4o is ON HOLD		The entry 4m4o is ON HOLD

-	Authors: ~~MALASHKEVICH~~, V.N., Padlan, F.C.., Toro,R., Girvin, M., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)	+	Authors: Malashkevich, V.N., Padlan, F.C., Toro, R., Girvin, M., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

-	Description: ~~CRYSTAL STRUCTURE OF~~ the aptamer minE-lysozyme complex	+	Description: Crystal structure of the aptamer minE-lysozyme complex

OCA: Protected "4m4o" [edit=sysop:move=sysop]

OCA — Wed, 14 Aug 2013 07:26:22 GMT

Protected "4m4o" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:26, 14 August 2013

OCA: New page: '''Unreleased structure''' The entry 4m4o is ON HOLD Authors: MALASHKEVICH, V.N., Padlan, F.C.., Toro,R., Girvin, M., Almo, S.C., New York Structural Genomics Research Consortium (NYSGR...

OCA — Wed, 14 Aug 2013 07:26:21 GMT

New page: '''Unreleased structure''' The entry 4m4o is ON HOLD Authors: MALASHKEVICH, V.N., Padlan, F.C.., Toro,R., Girvin, M., Almo, S.C., New York Structural Genomics Research Consortium (NYSGR...

New page

'''Unreleased structure'''

The entry 4m4o is ON HOLD

Authors: MALASHKEVICH, V.N., Padlan, F.C.., Toro,R., Girvin, M., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

Description: CRYSTAL STRUCTURE OF the aptamer minE-lysozyme complex