4m7p - Revision history

OCA at 11:01, 21 December 2022

OCA — Wed, 21 Dec 2022 11:01:35 GMT

←Older revision		Revision as of 11:01, 21 December 2022
Line 1:		Line 1:
-	~~{{Large structure}}~~	+
	==Ensemble refinement of protein crystal structure of macrolide glycosyltransferases OleD==		==Ensemble refinement of protein crystal structure of macrolide glycosyltransferases OleD==
-	<StructureSection load='4m7p' size='340' side='right' caption='[[4m7p]], [[Resolution\|resolution]] 1.77Å' scene=''>	+	<StructureSection load='4m7p' size='340' side='right'caption='[[4m7p]], [[Resolution\|resolution]] 1.77Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4m7p]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"actinomyces_antibioticus"_waksman_and_woodruff_1941 "actinomyces~~ antibioticus~~" waksman and woodruff 1941~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M7P OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4M7P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4m7p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_antibioticus Streptomyces antibioticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M7P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4M7P FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	~~<tr~~ id~~='NonStdRes'><td class~~="~~sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat~~"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene><~~/td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4m7p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m7p OCA], [https://pdbe.org/4m7p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4m7p RCSB], [https://www.ebi.ac.uk/pdbsum/4m7p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4m7p ProSAT]</span></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat">[[4m60\|4m60]]</td></tr>~~	+
-	~~<tr id='gene~~'>~~<td class="sblockLbl"><b>[[Gene\|Gene:]]~~</b>~~</td><td class="sblockDat">oleD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1890 "Actinomyces antibioticus" Waksman and Woodruff 1941])~~</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4m7p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m7p OCA], [~~http~~://pdbe.org/4m7p PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4m7p RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4m7p PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4m7p ProSAT]</span></td></tr>	+
	</table>		</table>
-	~~{{Large structure}}~~	+	== Function ==
		+	[https://www.uniprot.org/uniprot/OLED_STRAT OLED_STRAT] Specifically inactivates oleandomycin via 2'-O-glycosylation using UDP-glucose.

	==See Also==		==See Also==
-	*[[Glycosyltransferase\|Glycosyltransferase]]	+	*[[Glycosyltransferase 3D structures\|Glycosyltransferase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Actinomyces~~ antibioticus ~~waksman and woodruff 1941~~]]	+	[[Category: Large Structures]]
-	[[Category: Bingman~~, C A~~]]	+	[[Category: Streptomyces antibioticus]]
-	[[Category: Helmich~~, K E~~]]	+	[[Category: Bingman CA]]
-	[[Category: ~~NatPro, Enzyme Discovery for Natural Product Biosynthesis~~]]	+	[[Category: Helmich KE]]
-	[[Category: Olmos~~, J L~~]]	+	[[Category: Martinez iii E]]
-	[[Category: Phillips~~, G N~~]]	+	[[Category: Olmos Jr JL]]
-	[[Category: Singh, S]]	+	[[Category: Phillips Jr GN]]
-	[[Category: Thorson~~, J S~~]]	+	[[Category: Singh S]]
-	[[Category: Wang, F]]	+	[[Category: Thorson JS]]
-	[[Category: Xu, W]]	+	[[Category: Wang F]]
-	~~[[Category: Iii, E Martinez]]~~	+	[[Category: Xu W]]
-	~~[[Category: Enzyme discovery for natural product biosynthesis]]~~	+
-	~~[[Category: Natpro]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Psi-biology]]~~	+
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 11:46, 11 August 2016

OCA — Thu, 11 Aug 2016 11:46:19 GMT

←Older revision		Revision as of 11:46, 11 August 2016
Line 1:		Line 1:
		+	{{Large structure}}
	==Ensemble refinement of protein crystal structure of macrolide glycosyltransferases OleD==		==Ensemble refinement of protein crystal structure of macrolide glycosyltransferases OleD==
	<StructureSection load='4m7p' size='340' side='right' caption='[[4m7p]], [[Resolution\|resolution]] 1.77Å' scene=''>		<StructureSection load='4m7p' size='340' side='right' caption='[[4m7p]], [[Resolution\|resolution]] 1.77Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4m7p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Streptomyces_antibioticus Streptomyces~~ antibioticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M7P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4M7P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4m7p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_antibioticus"_waksman_and_woodruff_1941 "actinomyces antibioticus" waksman and woodruff 1941]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M7P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4M7P FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4m60\|4m60]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4m60\|4m60]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">oleD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1890 ~~Streptomyces~~ antibioticus])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">oleD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1890 "Actinomyces antibioticus" Waksman and Woodruff 1941])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4m7p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m7p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4m7p RCSB], [http://www.ebi.ac.uk/pdbsum/4m7p PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4m7p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m7p OCA], [http://pdbe.org/4m7p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4m7p RCSB], [http://www.ebi.ac.uk/pdbsum/4m7p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4m7p ProSAT]</span></td></tr>
	</table>		</table>
		+	{{Large structure}}

	==See Also==		==See Also==
Line 14:		Line 16:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Streptomyces~~ antibioticus]]	+	[[Category: Actinomyces antibioticus waksman and woodruff 1941]]
	[[Category: Bingman, C A]]		[[Category: Bingman, C A]]
	[[Category: Helmich, K E]]		[[Category: Helmich, K E]]

OCA at 09:25, 5 January 2015

OCA — Mon, 05 Jan 2015 09:25:37 GMT

←Older revision		Revision as of 09:25, 5 January 2015
Line 1:		Line 1:
-	~~{{Large structure}}~~	+	==Ensemble refinement of protein crystal structure of macrolide glycosyltransferases OleD==
-	~~{{STRUCTURE_4m7p\| PDB=4m7p \| SCENE= }}~~	+	<StructureSection load='4m7p' size='340' side='right' caption='[[4m7p]], [[Resolution\|resolution]] 1.77Å' scene=''>
-	===Ensemble refinement of protein crystal structure of macrolide glycosyltransferases OleD===	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4m7p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_antibioticus Streptomyces antibioticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M7P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4M7P FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4m60\|4m60]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">oleD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1890 Streptomyces antibioticus])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4m7p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m7p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4m7p RCSB], [http://www.ebi.ac.uk/pdbsum/4m7p PDBsum]</span></td></tr>
		+	</table>

-	==~~About this Structure~~==	+	==See Also==
-	[[~~4m7p~~]] ~~is a 1 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Streptomyces_antibioticus Streptomyces antibioticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M7P OCA].~~	+	*[[Glycosyltransferase\|Glycosyltransferase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Streptomyces antibioticus]]		[[Category: Streptomyces antibioticus]]
-	[[Category: Bingman, C A.]]	+	[[Category: Bingman, C A]]
-	[[Category: Helmich, K E.]]	+	[[Category: Helmich, K E]]
-	[[Category: NatPro, Enzyme Discovery for Natural Product Biosynthesis.]]	+	[[Category: NatPro, Enzyme Discovery for Natural Product Biosynthesis]]
-	[[Category: Olmos, J L.]]	+	[[Category: Olmos, J L]]
-	[[Category: Phillips, G N.]]	+	[[Category: Phillips, G N]]
-	[[Category: Singh, S.]]	+	[[Category: Singh, S]]
-	[[Category: Thorson, J S.]]	+	[[Category: Thorson, J S]]
-	[[Category: Wang, F.]]	+	[[Category: Wang, F]]
-	[[Category: Xu, W.]]	+	[[Category: Xu, W]]
-	[[Category: Iii, E Martinez.]]	+	[[Category: Iii, E Martinez]]
	[[Category: Enzyme discovery for natural product biosynthesis]]		[[Category: Enzyme discovery for natural product biosynthesis]]
	[[Category: Natpro]]		[[Category: Natpro]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
	[[Category: Psi-biology]]		[[Category: Psi-biology]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 05:34, 12 September 2013

OCA — Thu, 12 Sep 2013 05:34:13 GMT

←Older revision		Revision as of 05:34, 12 September 2013
Line 1:		Line 1:
-	~~'''Unreleased~~ structure~~'''~~	+	{{Large structure}}
		+	{{STRUCTURE_4m7p\| PDB=4m7p \| SCENE= }}
		+	===Ensemble refinement of protein crystal structure of macrolide glycosyltransferases OleD===

-	~~The entry~~ 4m7p is ~~ON HOLD~~	+	==About this Structure==
-		+	[[4m7p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_antibioticus Streptomyces antibioticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M7P OCA].
-	~~Authors~~: ~~Wang~~, F., Helmich, K.E., ~~Xu, W~~.~~, Singh, S.,~~ Olmos ~~Jr.~~, J.L., ~~Martinez iii, E~~., ~~Bingman, C.A~~., Thorson, J.S., ~~Phillips Jr~~., ~~G.N~~., Enzyme ~~Discovery~~ for ~~Natural Product Biosynthesis (NatPro)~~	+	[[Category: Streptomyces antibioticus]]
-		+	[[Category: Bingman, C A.]]
-	~~Description~~: ~~Ensemble refinement of protein crystal~~ structure ~~of macrolide glycosyltransferases OleD~~	+	[[Category: Helmich, K E.]]
		+	[[Category: NatPro, Enzyme Discovery for Natural Product Biosynthesis.]]
		+	[[Category: Olmos, J L.]]
		+	[[Category: Phillips, G N.]]
		+	[[Category: Singh, S.]]
		+	[[Category: Thorson, J S.]]
		+	[[Category: Wang, F.]]
		+	[[Category: Xu, W.]]
		+	[[Category: Iii, E Martinez.]]
		+	[[Category: Enzyme discovery for natural product biosynthesis]]
		+	[[Category: Natpro]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-biology]]
		+	[[Category: Structural genomic]]
		+	[[Category: Transferase]]

OCA at 06:53, 28 August 2013

OCA — Wed, 28 Aug 2013 06:53:47 GMT

←Older revision		Revision as of 06:53, 28 August 2013
Line 3:		Line 3:
	The entry 4m7p is ON HOLD		The entry 4m7p is ON HOLD

-	Authors: Wang, F., Helmich, K.E., Xu, W., Singh, S., Olmos, Jr., J.L., Martinez ~~III~~, E., Bingman, C.A., Thorson, J.S., Phillips Jr., G.N., Enzyme Discovery for Natural Product Biosynthesis (NatPro)	+	Authors: Wang, F., Helmich, K.E., Xu, W., Singh, S., Olmos Jr., J.L., Martinez iii, E., Bingman, C.A., Thorson, J.S., Phillips Jr., G.N., Enzyme Discovery for Natural Product Biosynthesis (NatPro)

	Description: Ensemble refinement of protein crystal structure of macrolide glycosyltransferases OleD		Description: Ensemble refinement of protein crystal structure of macrolide glycosyltransferases OleD

OCA: Protected "4m7p" [edit=sysop:move=sysop]

OCA — Wed, 21 Aug 2013 07:57:56 GMT

Protected "4m7p" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:57, 21 August 2013

OCA: New page: '''Unreleased structure''' The entry 4m7p is ON HOLD Authors: Wang, F., Helmich, K.E., Xu, W., Singh, S., Olmos, Jr., J.L., Martinez III, E., Bingman, C.A., Thorson, J.S., Phillips Jr.,...

OCA — Wed, 21 Aug 2013 07:57:54 GMT

New page: '''Unreleased structure''' The entry 4m7p is ON HOLD Authors: Wang, F., Helmich, K.E., Xu, W., Singh, S., Olmos, Jr., J.L., Martinez III, E., Bingman, C.A., Thorson, J.S., Phillips Jr.,...

New page

'''Unreleased structure'''

The entry 4m7p is ON HOLD

Authors: Wang, F., Helmich, K.E., Xu, W., Singh, S., Olmos, Jr., J.L., Martinez III, E., Bingman, C.A., Thorson, J.S., Phillips Jr., G.N., Enzyme Discovery for Natural Product Biosynthesis (NatPro)

Description: Ensemble refinement of protein crystal structure of macrolide glycosyltransferases OleD