4n9n - Revision history

OCA at 08:16, 11 January 2023

OCA — Wed, 11 Jan 2023 08:16:10 GMT

←Older revision		Revision as of 08:16, 11 January 2023
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	==Crystal Structure of Saccharomyces cerevisiae Upc2 Transcription Factor fused with T4 Lysozyme==		==Crystal Structure of Saccharomyces cerevisiae Upc2 Transcription Factor fused with T4 Lysozyme==
-	<StructureSection load='4n9n' size='340' side='right' caption='[[4n9n]], [[Resolution\|resolution]] 2.90Å' scene=''>	+	<StructureSection load='4n9n' size='340' side='right'caption='[[4n9n]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4n9n]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Bpt4 Bpt4~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N9N OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4N9N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4n9n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4] and [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N9N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4N9N FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">UPC2, E ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 BPT4])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4n9n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n9n OCA], [https://pdbe.org/4n9n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4n9n RCSB], [https://www.ebi.ac.uk/pdbsum/4n9n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4n9n ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4n9n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n9n OCA], [~~http~~://pdbe.org/4n9n PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4n9n RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4n9n PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4n9n ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/UPC2_YEAST UPC2_YEAST]] Transcription factor that is involved in activation of anaerobic genes such as DAN/TIR cell wall mannoprotein genes and YML083c. Appears to bind to anaerobic response elements (AR1) with the consensus sequence 5'-TCGTTYAG-3' present in the promoter regions of DAN/TIR genes. Involved in sterol uptake and regulation of the sterol biosynthesis. Binds to sterol regulatory elements (SRE) with the consensus sequence 5'-TCGTATA-3' present in ERG2 and ERG3 promoters. May be involved in down-regulation of CWP2 during anaerobic adaptation.<ref>PMID:11238402</ref> <ref>PMID:11292809</ref> <ref>PMID:11533229</ref> <ref>PMID:12077145</ref> <ref>PMID:12673627</ref>	+	[https://www.uniprot.org/uniprot/ENLYS_BPT4 ENLYS_BPT4] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.<ref>PMID:22389108</ref> [https://www.uniprot.org/uniprot/UPC2_YEAST UPC2_YEAST] Transcription factor that is involved in activation of anaerobic genes such as DAN/TIR cell wall mannoprotein genes and YML083c. Appears to bind to anaerobic response elements (AR1) with the consensus sequence 5'-TCGTTYAG-3' present in the promoter regions of DAN/TIR genes. Involved in sterol uptake and regulation of the sterol biosynthesis. Binds to sterol regulatory elements (SRE) with the consensus sequence 5'-TCGTATA-3' present in ERG2 and ERG3 promoters. May be involved in down-regulation of CWP2 during anaerobic adaptation.<ref>PMID:11238402</ref> <ref>PMID:11292809</ref> <ref>PMID:11533229</ref> <ref>PMID:12077145</ref> <ref>PMID:12673627</ref>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bpt4~~]]	+	[[Category: Escherichia virus T4]]
-	[[Category: ~~Im, Y J~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Yang, H~~]]	+	[[Category: Saccharomyces cerevisiae S288C]]
-	[[Category: ~~Ergosterol binding~~]]	+	[[Category: Im YJ]]
-	[[Category: ~~Fungal nuclear receptor-like transcription factor]]~~	+	[[Category: Yang H]]
-	~~[[Category: Nucleus]]~~	+
-	~~[[Category: Transcription~~]]	+

OCA at 01:04, 16 November 2017

OCA — Thu, 16 Nov 2017 01:04:27 GMT

←Older revision		Revision as of 01:04, 16 November 2017
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	<StructureSection load='4n9n' size='340' side='right' caption='[[4n9n]], [[Resolution\|resolution]] 2.90Å' scene=''>		<StructureSection load='4n9n' size='340' side='right' caption='[[4n9n]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4n9n]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N9N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4N9N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4n9n]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N9N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4N9N FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">UPC2, E ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 BPT4])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4n9n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n9n OCA], [http://pdbe.org/4n9n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4n9n RCSB], [http://www.ebi.ac.uk/pdbsum/4n9n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4n9n ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4n9n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n9n OCA], [http://pdbe.org/4n9n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4n9n RCSB], [http://www.ebi.ac.uk/pdbsum/4n9n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4n9n ProSAT]</span></td></tr>
	</table>		</table>
Line 13:		Line 14:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bpt4]]
	[[Category: Im, Y J]]		[[Category: Im, Y J]]
	[[Category: Yang, H]]		[[Category: Yang, H]]

OCA at 18:49, 4 August 2016

OCA — Thu, 04 Aug 2016 18:49:36 GMT

←Older revision		Revision as of 18:49, 4 August 2016
Line 1:		Line 1:
		+
	==Crystal Structure of Saccharomyces cerevisiae Upc2 Transcription Factor fused with T4 Lysozyme==		==Crystal Structure of Saccharomyces cerevisiae Upc2 Transcription Factor fused with T4 Lysozyme==
	<StructureSection load='4n9n' size='340' side='right' caption='[[4n9n]], [[Resolution\|resolution]] 2.90Å' scene=''>		<StructureSection load='4n9n' size='340' side='right' caption='[[4n9n]], [[Resolution\|resolution]] 2.90Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[4n9n]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N9N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4N9N FirstGlance]. <br>		<table><tr><td colspan='2'>[[4n9n]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N9N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4N9N FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4n9n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n9n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4n9n RCSB], [http://www.ebi.ac.uk/pdbsum/4n9n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4n9n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n9n OCA], [http://pdbe.org/4n9n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4n9n RCSB], [http://www.ebi.ac.uk/pdbsum/4n9n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4n9n ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 12:07, 25 December 2014

OCA — Thu, 25 Dec 2014 12:07:00 GMT

←Older revision		Revision as of 12:07, 25 December 2014
Line 6:		Line 6:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4n9n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n9n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4n9n RCSB], [http://www.ebi.ac.uk/pdbsum/4n9n PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4n9n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n9n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4n9n RCSB], [http://www.ebi.ac.uk/pdbsum/4n9n PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/UPC2_YEAST UPC2_YEAST]] Transcription factor that is involved in activation of anaerobic genes such as DAN/TIR cell wall mannoprotein genes and YML083c. Appears to bind to anaerobic response elements (AR1) with the consensus sequence 5'-TCGTTYAG-3' present in the promoter regions of DAN/TIR genes. Involved in sterol uptake and regulation of the sterol biosynthesis. Binds to sterol regulatory elements (SRE) with the consensus sequence 5'-TCGTATA-3' present in ERG2 and ERG3 promoters. May be involved in down-regulation of CWP2 during anaerobic adaptation.<ref>PMID:11238402</ref> <ref>PMID:11292809</ref> <ref>PMID:11533229</ref> <ref>PMID:12077145</ref> <ref>PMID:12673627</ref>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 09:38, 3 December 2014

OCA — Wed, 03 Dec 2014 09:38:58 GMT

←Older revision		Revision as of 09:38, 3 December 2014
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-	'''~~Unreleased structure~~'''	+	==Crystal Structure of Saccharomyces cerevisiae Upc2 Transcription Factor fused with T4 Lysozyme==
-		+	<StructureSection load='4n9n' size='340' side='right' caption='[[4n9n]], [[Resolution\|resolution]] 2.90Å' scene=''>
-	~~The entry~~ 4n9n is ~~ON HOLD until Paper Publication~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4n9n]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N9N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4N9N FirstGlance]. <br>
-	~~Authors~~: ~~Yang~~, H., Im, Y.J.	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4n9n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n9n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4n9n RCSB], [http://www.ebi.ac.uk/pdbsum/4n9n PDBsum]</span></td></tr>
-	~~Description~~: ~~Crystal Structure of Saccharomyces cerevisiae Upc2~~ Transcription ~~Factor fused with T4 Lysozyme~~	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Im, Y J]]
		+	[[Category: Yang, H]]
		+	[[Category: Ergosterol binding]]
		+	[[Category: Fungal nuclear receptor-like transcription factor]]
		+	[[Category: Nucleus]]
		+	[[Category: Transcription]]

OCA at 07:41, 13 November 2013

OCA — Wed, 13 Nov 2013 07:41:42 GMT

←Older revision		Revision as of 07:41, 13 November 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4n9n is ON HOLD	+	The entry 4n9n is ON HOLD until Paper Publication

	Authors: Yang, H., Im, Y.J.		Authors: Yang, H., Im, Y.J.

	Description: Crystal Structure of Saccharomyces cerevisiae Upc2 Transcription Factor fused with T4 Lysozyme		Description: Crystal Structure of Saccharomyces cerevisiae Upc2 Transcription Factor fused with T4 Lysozyme

OCA: Protected "4n9n" [edit=sysop:move=sysop]

OCA — Wed, 06 Nov 2013 07:05:01 GMT

Protected "4n9n" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:05, 6 November 2013

OCA: New page: '''Unreleased structure''' The entry 4n9n is ON HOLD Authors: Yang, H., Im, Y.J. Description: Crystal Structure of Saccharomyces cerevisiae Upc2 Transcription Factor fused with T4 Lyso...

OCA — Wed, 06 Nov 2013 07:05:00 GMT

New page: '''Unreleased structure''' The entry 4n9n is ON HOLD Authors: Yang, H., Im, Y.J. Description: Crystal Structure of Saccharomyces cerevisiae Upc2 Transcription Factor fused with T4 Lyso...

New page

'''Unreleased structure'''

The entry 4n9n is ON HOLD

Authors: Yang, H., Im, Y.J.

Description: Crystal Structure of Saccharomyces cerevisiae Upc2 Transcription Factor fused with T4 Lysozyme