4o6p - Revision history

OCA at 14:54, 8 November 2023

OCA — Wed, 08 Nov 2023 14:54:12 GMT

←Older revision		Revision as of 14:54, 8 November 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4o6p]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Caldanaerobacter_subterraneus_subsp._tengcongensis_MB4 Caldanaerobacter subterraneus subsp. tengcongensis MB4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O6P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4O6P FirstGlance]. <br>		<table><tr><td colspan='2'>[[4o6p]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Caldanaerobacter_subterraneus_subsp._tengcongensis_MB4 Caldanaerobacter subterraneus subsp. tengcongensis MB4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O6P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4O6P FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4o6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o6p OCA], [https://pdbe.org/4o6p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4o6p RCSB], [https://www.ebi.ac.uk/pdbsum/4o6p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4o6p ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4o6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o6p OCA], [https://pdbe.org/4o6p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4o6p RCSB], [https://www.ebi.ac.uk/pdbsum/4o6p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4o6p ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:58, 18 January 2023

OCA — Wed, 18 Jan 2023 08:58:23 GMT

←Older revision		Revision as of 08:58, 18 January 2023
Line 3:		Line 3:
	<StructureSection load='4o6p' size='340' side='right'caption='[[4o6p]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='4o6p' size='340' side='right'caption='[[4o6p]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4o6p]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Cals4 Cals4~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O6P OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4O6P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4o6p]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Caldanaerobacter_subterraneus_subsp._tengcongensis_MB4 Caldanaerobacter subterraneus subsp. tengcongensis MB4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O6P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4O6P FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4o6o\|4o6o]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4o6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o6p OCA], [https://pdbe.org/4o6p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4o6p RCSB], [https://www.ebi.ac.uk/pdbsum/4o6p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4o6p ProSAT]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">recR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273068 CALS4])~~</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4o6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o6p OCA], [~~http~~://pdbe.org/4o6p PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4o6p RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4o6p PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4o6p ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/RECR_CALS4 RECR_CALS4]] May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.[HAMAP-Rule:MF_00017]	+	[https://www.uniprot.org/uniprot/RECR_CALS4 RECR_CALS4] May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.[HAMAP-Rule:MF_00017]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Cals4~~]]	+	[[Category: Caldanaerobacter subterraneus subsp. tengcongensis MB4]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Liang~~, D C~~]]	+	[[Category: Liang DC]]
-	[[Category: Liu~~, Y P~~]]	+	[[Category: Liu YP]]
-	[[Category: Tang, Q]]	+	[[Category: Tang Q]]
-	[[Category: Yan~~, X X]]~~	+	[[Category: Yan XX]]
-	~~[[Category: Dna binding]]~~	+
-	~~[[Category: Dna repair]]~~	+
-	~~[[Category: Recombination]]~~	+
-	~~[[Category: Zinc finger~~]]	+

OCA at 08:39, 1 January 2020

OCA — Wed, 01 Jan 2020 08:39:04 GMT

←Older revision		Revision as of 08:39, 1 January 2020
Line 11:		Line 11:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/RECR_CALS4 RECR_CALS4]] May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.[HAMAP-Rule:MF_00017]		[[http://www.uniprot.org/uniprot/RECR_CALS4 RECR_CALS4]] May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.[HAMAP-Rule:MF_00017]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Zinc finger motif widely exists in protein structure, which can play different roles in different proteins. RecR is an important recombination mediator protein (RMP) in the RecFOR pathway and zinc finger motif is the most conserved domain in RecR protein. However, the function of this zinc finger motif in RecR is unclear. Here, we have studied the structures of the single cysteine and double cysteines mutation within the zinc finger motif in Thermoanaerobacter tengcongensis RecR (TTERecR). We have also studied the DNA binding ability as well as TTERecO protein binding ability of single, double and even triple cysteines mutation of the zinc finger motif, and the mutants do not alter DNA binding by RecR nor the interaction between RecR and RecO. The function of TTERecR zinc finger motif is to maintain the stability of the three-dimensional structure.
		+
		+	Structural and functional characterization of Cys4 zinc finger motif in the recombination mediator protein RecR.,Tang Q, Liu YP, Yan XX, Liang DC DNA Repair (Amst). 2014 Dec;24:10-14. doi: 10.1016/j.dnarep.2014.09.012. PMID:25460918<ref>PMID:25460918</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 4o6p" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 09:08, 10 April 2019

OCA — Wed, 10 Apr 2019 09:08:58 GMT

←Older revision		Revision as of 09:08, 10 April 2019
Line 1:		Line 1:

	==Structural and functional studies the characterization of C58G/C70G mutant in Cys4 Zinc-finger motif in the recombination mediator protein RecR==		==Structural and functional studies the characterization of C58G/C70G mutant in Cys4 Zinc-finger motif in the recombination mediator protein RecR==
-	<StructureSection load='4o6p' size='340' side='right' caption='[[4o6p]], [[Resolution\|resolution]] 3.00Å' scene=''>	+	<StructureSection load='4o6p' size='340' side='right'caption='[[4o6p]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4o6p]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O6P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4O6P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4o6p]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Cals4 Cals4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O6P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4O6P FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4o6o\|4o6o]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4o6o\|4o6o]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">recR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273068 CALS4])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4o6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o6p OCA], [http://pdbe.org/4o6p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4o6p RCSB], [http://www.ebi.ac.uk/pdbsum/4o6p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4o6p ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4o6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o6p OCA], [http://pdbe.org/4o6p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4o6p RCSB], [http://www.ebi.ac.uk/pdbsum/4o6p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4o6p ProSAT]</span></td></tr>
	</table>		</table>
Line 12:		Line 13:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Cals4]]
		+	[[Category: Large Structures]]
	[[Category: Liang, D C]]		[[Category: Liang, D C]]
	[[Category: Liu, Y P]]		[[Category: Liu, Y P]]

OCA at 18:58, 4 August 2016

OCA — Thu, 04 Aug 2016 18:58:55 GMT

←Older revision		Revision as of 18:58, 4 August 2016
Line 1:		Line 1:
		+
	==Structural and functional studies the characterization of C58G/C70G mutant in Cys4 Zinc-finger motif in the recombination mediator protein RecR==		==Structural and functional studies the characterization of C58G/C70G mutant in Cys4 Zinc-finger motif in the recombination mediator protein RecR==
	<StructureSection load='4o6p' size='340' side='right' caption='[[4o6p]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='4o6p' size='340' side='right' caption='[[4o6p]], [[Resolution\|resolution]] 3.00Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4o6o\|4o6o]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4o6o\|4o6o]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4o6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o6p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4o6p RCSB], [http://www.ebi.ac.uk/pdbsum/4o6p PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4o6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o6p OCA], [http://pdbe.org/4o6p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4o6p RCSB], [http://www.ebi.ac.uk/pdbsum/4o6p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4o6p ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 18:28, 24 December 2014

OCA — Wed, 24 Dec 2014 18:28:51 GMT

←Older revision		Revision as of 18:28, 24 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4o6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o6p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4o6p RCSB], [http://www.ebi.ac.uk/pdbsum/4o6p PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4o6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o6p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4o6p RCSB], [http://www.ebi.ac.uk/pdbsum/4o6p PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RECR_CALS4 RECR_CALS4]] May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.[HAMAP-Rule:MF_00017]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 16:21, 10 December 2014

OCA — Wed, 10 Dec 2014 16:21:57 GMT

←Older revision		Revision as of 16:21, 10 December 2014
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Structural and functional studies the characterization of C58G/C70G mutant in Cys4 Zinc-finger motif in the recombination mediator protein RecR==
-		+	<StructureSection load='4o6p' size='340' side='right' caption='[[4o6p]], [[Resolution\|resolution]] 3.00Å' scene=''>
-	~~The entry~~ 4o6p is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4o6p]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O6P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4O6P FirstGlance]. <br>
-	~~Authors~~: ~~Tang, Q~~., ~~Liu, Y~~.P., ~~Yan, X~~.X., Liang, D.C.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4o6o\|4o6o]]</td></tr>
-	~~Description~~: ~~Structural and functional studies the characterization of C58G/C70G mutant in Cys4~~ Zinc-finger ~~motif in the recombination mediator protein RecR~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4o6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o6p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4o6p RCSB], [http://www.ebi.ac.uk/pdbsum/4o6p PDBsum]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Liang, D C]]
		+	[[Category: Liu, Y P]]
		+	[[Category: Tang, Q]]
		+	[[Category: Yan, X X]]
		+	[[Category: Dna binding]]
		+	[[Category: Dna repair]]
		+	[[Category: Recombination]]
		+	[[Category: Zinc finger]]

OCA: Protected "4o6p" [edit=sysop:move=sysop]

OCA — Wed, 08 Jan 2014 09:24:59 GMT

Protected "4o6p" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:24, 8 January 2014

OCA: New page: '''Unreleased structure''' The entry 4o6p is ON HOLD Authors: Tang, Q., Liu, Y.P., Yan, X.X., Liang, D.C. Description: Structural and functional studies the characterization of C58G/C7...

OCA — Wed, 08 Jan 2014 09:24:57 GMT

New page: '''Unreleased structure''' The entry 4o6p is ON HOLD Authors: Tang, Q., Liu, Y.P., Yan, X.X., Liang, D.C. Description: Structural and functional studies the characterization of C58G/C7...

New page

'''Unreleased structure'''

The entry 4o6p is ON HOLD

Authors: Tang, Q., Liu, Y.P., Yan, X.X., Liang, D.C.

Description: Structural and functional studies the characterization of C58G/C70G mutant in Cys4 Zinc-finger motif in the recombination mediator protein RecR