4p55 - Revision history

OCA at 00:40, 28 December 2023

OCA — Thu, 28 Dec 2023 00:40:15 GMT

←Older revision		Revision as of 00:40, 28 December 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4p55]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_herpesvirus_8_strain_GK18 Human herpesvirus 8 strain GK18]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P55 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4P55 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4p55]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_herpesvirus_8_strain_GK18 Human herpesvirus 8 strain GK18]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P55 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4P55 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.504Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4p55 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p55 OCA], [https://pdbe.org/4p55 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4p55 RCSB], [https://www.ebi.ac.uk/pdbsum/4p55 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4p55 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4p55 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p55 OCA], [https://pdbe.org/4p55 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4p55 RCSB], [https://www.ebi.ac.uk/pdbsum/4p55 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4p55 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 12:42, 1 February 2023

OCA — Wed, 01 Feb 2023 12:42:12 GMT

←Older revision		Revision as of 12:42, 1 February 2023
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	<StructureSection load='4p55' size='340' side='right'caption='[[4p55]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='4p55' size='340' side='right'caption='[[4p55]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4p55]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Hhv-8 Hhv-~~8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P55 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4P55 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4p55]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_herpesvirus_8_strain_GK18 Human herpesvirus 8 strain GK18]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P55 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4P55 FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">vIRF-2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=868565 HHV-8])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4p55 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p55 OCA], [https://pdbe.org/4p55 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4p55 RCSB], [https://www.ebi.ac.uk/pdbsum/4p55 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4p55 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4p55 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p55 OCA], [~~http~~://pdbe.org/4p55 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4p55 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4p55 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4p55 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/VIRF2_HHV8P VIRF2_HHV8P]] Plays a role in the inhibition of host immune response. Acts by interacting with host EIF2AK2/PKR and inhibiting its activation. In turn, EIF2AK2/PKR substrates including EIF2S1 or histone H2A are not phosphorylated.<ref>PMID:11160738</ref>	+	[https://www.uniprot.org/uniprot/VIRF2_HHV8P VIRF2_HHV8P] Plays a role in the inhibition of host immune response. Acts by interacting with host EIF2AK2/PKR and inhibiting its activation. In turn, EIF2AK2/PKR substrates including EIF2S1 or histone H2A are not phosphorylated.<ref>PMID:11160738</ref>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Hhv-~~8]]	+	[[Category: Human herpesvirus 8 strain GK18]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Dong~~, Y H~~]]	+	[[Category: Dong YH]]
-	[[Category: Gao~~, Z Q~~]]	+	[[Category: Gao ZQ]]
-	[[Category: Hu~~, H D~~]]	+	[[Category: Hu HD]]
-	[[Category: Lan, K]]	+	[[Category: Lan K]]
-	~~[[Category: Dna binding protein]]~~	+
-	~~[[Category: Interferon regulatory factor~~]]	+

OCA at 08:11, 17 April 2019

OCA — Wed, 17 Apr 2019 08:11:29 GMT

←Older revision		Revision as of 08:11, 17 April 2019
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	==Crystal structure of DNA binding domain of K11 from KSHV==		==Crystal structure of DNA binding domain of K11 from KSHV==
-	<StructureSection load='4p55' size='340' side='right' caption='[[4p55]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='4p55' size='340' side='right'caption='[[4p55]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4p55]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P55 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4P55 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4p55]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Hhv-8 Hhv-8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P55 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4P55 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">vIRF-2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=868565 HHV-8])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4p55 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p55 OCA], [http://pdbe.org/4p55 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4p55 RCSB], [http://www.ebi.ac.uk/pdbsum/4p55 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4p55 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4p55 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p55 OCA], [http://pdbe.org/4p55 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4p55 RCSB], [http://www.ebi.ac.uk/pdbsum/4p55 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4p55 ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Hhv-8]]
		+	[[Category: Large Structures]]
	[[Category: Dong, Y H]]		[[Category: Dong, Y H]]
	[[Category: Gao, Z Q]]		[[Category: Gao, Z Q]]

OCA at 17:29, 18 January 2017

OCA — Wed, 18 Jan 2017 17:29:48 GMT

←Older revision		Revision as of 17:29, 18 January 2017
Line 1:		Line 1:
		+
	==Crystal structure of DNA binding domain of K11 from KSHV==		==Crystal structure of DNA binding domain of K11 from KSHV==
	<StructureSection load='4p55' size='340' side='right' caption='[[4p55]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='4p55' size='340' side='right' caption='[[4p55]], [[Resolution\|resolution]] 2.50Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[4p55]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P55 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4P55 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4p55]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P55 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4P55 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4p55 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p55 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4p55 RCSB], [http://www.ebi.ac.uk/pdbsum/4p55 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4p55 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p55 OCA], [http://pdbe.org/4p55 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4p55 RCSB], [http://www.ebi.ac.uk/pdbsum/4p55 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4p55 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 12:58, 15 April 2015

OCA — Wed, 15 Apr 2015 12:58:04 GMT

←Older revision		Revision as of 12:58, 15 April 2015
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-	'''~~Unreleased structure~~'''	+	==Crystal structure of DNA binding domain of K11 from KSHV==
-		+	<StructureSection load='4p55' size='340' side='right' caption='[[4p55]], [[Resolution\|resolution]] 2.50Å' scene=''>
-	~~The entry~~ 4p55 is ~~ON HOLD until Apr 12 2016~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4p55]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P55 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4P55 FirstGlance]. <br>
-	~~Authors~~: ~~Hu, H~~.D.~~, Gao, Z~~.Q., ~~Lan~~, K., ~~Dong, Y~~.H.	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4p55 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p55 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4p55 RCSB], [http://www.ebi.ac.uk/pdbsum/4p55 PDBsum]</span></td></tr>
-	~~Description~~: ~~Crystal structure~~ of ~~DNA binding domain of K11 from KSHV~~	+	</table>
-	[[Category: ~~Unreleased Structures~~]]	+	== Function ==
-	[[Category: Gao, Z.Q]]	+	[[http://www.uniprot.org/uniprot/VIRF2_HHV8P VIRF2_HHV8P]] Plays a role in the inhibition of host immune response. Acts by interacting with host EIF2AK2/PKR and inhibiting its activation. In turn, EIF2AK2/PKR substrates including EIF2S1 or histone H2A are not phosphorylated.<ref>PMID:11160738</ref>
-	[[Category: ~~Dong~~, Y.H]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Dong, Y H]]
		+	[[Category: Gao, Z Q]]
		+	[[Category: Hu, H D]]
	[[Category: Lan, K]]		[[Category: Lan, K]]
-	[[Category: ~~Hu, H.D~~]]	+	[[Category: Dna binding protein]]
		+	[[Category: Interferon regulatory factor]]

OCA at 08:19, 1 April 2015

OCA — Wed, 01 Apr 2015 08:19:14 GMT

←Older revision		Revision as of 08:19, 1 April 2015
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4p55 is ON HOLD until ~~Paper Publication~~	+	The entry 4p55 is ON HOLD until Apr 12 2016

	Authors: Hu, H.D., Gao, Z.Q., Lan, K., Dong, Y.H.		Authors: Hu, H.D., Gao, Z.Q., Lan, K., Dong, Y.H.

OCA at 14:47, 24 December 2014

OCA — Wed, 24 Dec 2014 14:47:06 GMT

←Older revision		Revision as of 14:47, 24 December 2014
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	Description: Crystal structure of DNA binding domain of K11 from KSHV		Description: Crystal structure of DNA binding domain of K11 from KSHV
		+	[[Category: Unreleased Structures]]
		+	[[Category: Gao, Z.Q]]
		+	[[Category: Dong, Y.H]]
		+	[[Category: Lan, K]]
		+	[[Category: Hu, H.D]]

OCA at 07:06, 14 May 2014

OCA — Wed, 14 May 2014 07:06:14 GMT

←Older revision		Revision as of 07:06, 14 May 2014
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4p55 is ON HOLD	+	The entry 4p55 is ON HOLD until Paper Publication

	Authors: Hu, H.D., Gao, Z.Q., Lan, K., Dong, Y.H.		Authors: Hu, H.D., Gao, Z.Q., Lan, K., Dong, Y.H.

	Description: Crystal structure of DNA binding domain of K11 from KSHV		Description: Crystal structure of DNA binding domain of K11 from KSHV

OCA at 08:48, 26 March 2014

OCA — Wed, 26 Mar 2014 08:48:34 GMT

←Older revision		Revision as of 08:48, 26 March 2014
Line 5:		Line 5:
	Authors: Hu, H.D., Gao, Z.Q., Lan, K., Dong, Y.H.		Authors: Hu, H.D., Gao, Z.Q., Lan, K., Dong, Y.H.

-	Description: ~~crystal~~ structure of DNA binding domain of K11 from KSHV	+	Description: Crystal structure of DNA binding domain of K11 from KSHV

OCA: Protected "4p55" [edit=sysop:move=sysop]

OCA — Wed, 19 Mar 2014 07:36:05 GMT

Protected "4p55" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:36, 19 March 2014