4pbh - Revision history

OCA at 00:42, 28 December 2023

OCA — Thu, 28 Dec 2023 00:42:26 GMT

←Older revision		Revision as of 00:42, 28 December 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4pbh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi_DSS-3 Ruegeria pomeroyi DSS-3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PBH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PBH FirstGlance]. <br>		<table><tr><td colspan='2'>[[4pbh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi_DSS-3 Ruegeria pomeroyi DSS-3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PBH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PBH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.2Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4pbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pbh OCA], [https://pdbe.org/4pbh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4pbh RCSB], [https://www.ebi.ac.uk/pdbsum/4pbh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4pbh ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4pbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pbh OCA], [https://pdbe.org/4pbh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4pbh RCSB], [https://www.ebi.ac.uk/pdbsum/4pbh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4pbh ProSAT]</span></td></tr>
	</table>		</table>

OCA at 12:50, 1 February 2023

OCA — Wed, 01 Feb 2023 12:50:46 GMT

←Older revision		Revision as of 12:50, 1 February 2023
Line 3:		Line 3:
	<StructureSection load='4pbh' size='340' side='right'caption='[[4pbh]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='4pbh' size='340' side='right'caption='[[4pbh]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4pbh]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Ruepo Ruepo~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PBH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4PBH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4pbh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi_DSS-3 Ruegeria pomeroyi DSS-3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PBH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PBH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4pbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pbh OCA], [https://pdbe.org/4pbh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4pbh RCSB], [https://www.ebi.ac.uk/pdbsum/4pbh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4pbh ProSAT]</span></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4paf\|4paf]], [[4pai\|4pai]]</td></tr>~~	+
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SPO1773 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=246200 RUEPO])~~</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4pbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pbh OCA], [~~http~~://pdbe.org/4pbh PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4pbh RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4pbh PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4pbh ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/DCTP_RUEPO DCTP_RUEPO] Solute-binding protein that binds 3,4-dihydroxybenzoate and 3-hydroxybenzoate (in vitro) (PubMed:25540822). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.<ref>PMID:25540822</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 4pbh" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 4pbh" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[TRAP dicarboxylate transporter%2C DctP subunit\|TRAP dicarboxylate transporter%2C DctP subunit]]
	== References ==		== References ==
	<references/>		<references/>
Line 24:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Ruepo~~]]	+	[[Category: Ruegeria pomeroyi DSS-3]]
-	[[Category: ~~Almo, S C~~]]	+	[[Category: Al Obaidi NF]]
-	[[Category: ~~Attonito, J D~~]]	+	[[Category: Almo SC]]
-	[[Category: ~~Chowdhury, S~~]]	+	[[Category: Attonito JD]]
-	[[Category: ~~EFI, Enzyme Function Initiative~~]]	+	[[Category: Chowdhury S]]
-	[[Category: Evans, B]]	+	[[Category: Evans B]]
-	[[Category: Gerlt~~, J A]]~~	+	[[Category: Gerlt JA]]
-	~~[[Category: Glenn, A Scott~~]]	+	[[Category: Hillerich B]]
-	[[Category: Hillerich, B]]	+	[[Category: Love J]]
-	[[Category: Love, J]]	+	[[Category: Morisco LL]]
-	[[Category: Morisco~~, L L~~]]	+	[[Category: Scott Glenn A]]
-	[[Category: ~~Obaidi, N F.Al~~]]	+	[[Category: Seidel RD]]
-	[[Category: Seidel~~, R D~~]]	+	[[Category: Stead M]]
-	[[Category: Stead, M]]	+	[[Category: Vetting MW]]
-	[[Category: Vetting~~, M W~~]]	+	[[Category: Wasserman SR]]
-	[[Category: Wasserman~~, S R~~]]	+	[[Category: Whalen KL]]
-	[[Category: Whalen~~, K L]]~~	+
-	~~[[Category: Efi]]~~	+
-	~~[[Category: Enzyme function initiative]]~~	+
-	~~[[Category: Solute-binding protein]]~~	+
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Trap periplasmic solute binding family~~]]	+

OCA at 10:10, 25 December 2019

OCA — Wed, 25 Dec 2019 10:10:57 GMT

←Older revision		Revision as of 10:10, 25 December 2019
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND BENZOIC ACID==		==CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND BENZOIC ACID==
-	<StructureSection load='4pbh' size='340' side='right' caption='[[4pbh]], [[Resolution\|resolution]] 1.20Å' scene=''>	+	<StructureSection load='4pbh' size='340' side='right'caption='[[4pbh]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4pbh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruepo Ruepo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PBH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PBH FirstGlance]. <br>		<table><tr><td colspan='2'>[[4pbh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruepo Ruepo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PBH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PBH FirstGlance]. <br>
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Ruepo]]		[[Category: Ruepo]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]

OCA at 11:58, 6 November 2017

OCA — Mon, 06 Nov 2017 11:58:24 GMT

←Older revision		Revision as of 11:58, 6 November 2017
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND BENZOIC ACID==		==CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND BENZOIC ACID==
	<StructureSection load='4pbh' size='340' side='right' caption='[[4pbh]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='4pbh' size='340' side='right' caption='[[4pbh]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4pbh]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PBH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PBH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4pbh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ruepo Ruepo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PBH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PBH FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4paf\|4paf]], [[4pai\|4pai]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4paf\|4paf]], [[4pai\|4pai]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pbh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pbh RCSB], [http://www.ebi.ac.uk/pdbsum/4pbh PDBsum]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SPO1773 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=246200 RUEPO])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pbh OCA], [http://pdbe.org/4pbh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4pbh RCSB], [http://www.ebi.ac.uk/pdbsum/4pbh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4pbh ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4pbh" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Ruepo]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Attonito, J D]]		[[Category: Attonito, J D]]

OCA at 08:24, 25 February 2015

OCA — Wed, 25 Feb 2015 08:24:22 GMT

←Older revision		Revision as of 08:24, 25 February 2015
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pbh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pbh RCSB], [http://www.ebi.ac.uk/pdbsum/4pbh PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pbh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pbh RCSB], [http://www.ebi.ac.uk/pdbsum/4pbh PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The rate at which genome sequencing data is accruing demands enhanced methods for functional annotation and metabolism discovery. Solute binding proteins (SBPs) facilitate the transport of the first reactant in a metabolic pathway, thereby constraining the regions of chemical space and the chemistries that must be considered for pathway reconstruction. We describe high-throughput protein production and differential scanning fluorimetry platforms, which enabled the screening of 158 SBPs against a 189 component library specifically tailored for this class of proteins. Like all screening efforts, this approach is limited by the practical constraints imposed by construction of the library, i.e., we can study only those metabolites that are known to exist and which can be made in sufficient quantities for experimentation. To move beyond these inherent limitations, we illustrate the promise of crystallographic- and mass spectrometric-based approaches for the unbiased use of entire metabolomes as screening libraries. Together, our approaches identified 40 new SBP ligands, generated experiment-based annotations for 2084 SBPs in 71 isofunctional clusters, and defined numerous metabolic pathways, including novel catabolic pathways for the utilization of ethanolamine as sole nitrogen source and the use of d-Ala-d-Ala as sole carbon source. These efforts begin to define an integrated strategy for realizing the full value of amassing genome sequence data.
		+
		+	Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.,Vetting MW, Al-Obaidi N, Zhao S, San Francisco B, Kim J, Wichelecki DJ, Bouvier JT, Solbiati JO, Vu H, Zhang X, Rodionov DA, Love JD, Hillerich BS, Seidel RD, Quinn RJ, Osterman AL, Cronan JE, Jacobson MP, Gerlt JA, Almo SC Biochemistry. 2015 Jan 27;54(3):909-31. doi: 10.1021/bi501388y. Epub 2015 Jan 16. PMID:25540822<ref>PMID:25540822</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 09:08, 5 January 2015

OCA — Mon, 05 Jan 2015 09:08:47 GMT

←Older revision		Revision as of 09:08, 5 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4pbh]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PBH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PBH FirstGlance]. <br>		<table><tr><td colspan='2'>[[4pbh]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PBH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PBH FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4paf\|4paf]], [[4pai\|4pai]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4paf\|4paf]], [[4pai\|4pai]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pbh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pbh RCSB], [http://www.ebi.ac.uk/pdbsum/4pbh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pbh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pbh RCSB], [http://www.ebi.ac.uk/pdbsum/4pbh PDBsum]</span></td></tr>
-	<table>	+	</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Almo, S C.]]	+	[[Category: Almo, S C]]
-	[[Category: Attonito, J D.]]	+	[[Category: Attonito, J D]]
-	[[Category: Chowdhury, S.]]	+	[[Category: Chowdhury, S]]
-	[[Category: EFI, Enzyme Function Initiative.]]	+	[[Category: EFI, Enzyme Function Initiative]]
-	[[Category: Evans, B.]]	+	[[Category: Evans, B]]
-	[[Category: Gerlt, J A.]]	+	[[Category: Gerlt, J A]]
-	[[Category: Glenn, A Scott.]]	+	[[Category: Glenn, A Scott]]
-	[[Category: Hillerich, B.]]	+	[[Category: Hillerich, B]]
-	[[Category: Love, J.]]	+	[[Category: Love, J]]
-	[[Category: Morisco, L L.]]	+	[[Category: Morisco, L L]]
-	[[Category: Obaidi, N F.Al.]]	+	[[Category: Obaidi, N F.Al]]
-	[[Category: Seidel, R D.]]	+	[[Category: Seidel, R D]]
-	[[Category: Stead, M.]]	+	[[Category: Stead, M]]
-	[[Category: Vetting, M W.]]	+	[[Category: Vetting, M W]]
-	[[Category: Wasserman, S R.]]	+	[[Category: Wasserman, S R]]
-	[[Category: Whalen, K L.]]	+	[[Category: Whalen, K L]]
	[[Category: Efi]]		[[Category: Efi]]
	[[Category: Enzyme function initiative]]		[[Category: Enzyme function initiative]]

OCA at 07:19, 11 June 2014

OCA — Wed, 11 Jun 2014 07:19:01 GMT

←Older revision		Revision as of 07:19, 11 June 2014
Line 2:		Line 2:
	<StructureSection load='4pbh' size='340' side='right' caption='[[4pbh]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='4pbh' size='340' side='right' caption='[[4pbh]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4pbh]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PBH OCA]. <br>	+	<table><tr><td colspan='2'>[[4pbh]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PBH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PBH FirstGlance]. <br>
	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene><br>		</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene><br>
	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4paf\|4paf]], [[4pai\|4pai]]</td></tr>		<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4paf\|4paf]], [[4pai\|4pai]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pbh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pbh RCSB], [http://www.ebi.ac.uk/pdbsum/4pbh PDBsum]</span></td></tr>		<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pbh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pbh RCSB], [http://www.ebi.ac.uk/pdbsum/4pbh PDBsum]</span></td></tr>
	<table>		<table>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 08:23, 7 May 2014

OCA — Wed, 07 May 2014 08:23:43 GMT

←Older revision		Revision as of 08:23, 7 May 2014
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND BENZOIC ACID==
-		+	<StructureSection load='4pbh' size='340' side='right' caption='[[4pbh]], [[Resolution\|resolution]] 1.20Å' scene=''>
-	~~The entry~~ 4pbh is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4pbh]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PBH OCA]. <br>
-	~~Authors~~: ~~Vetting~~, M.W., ~~Al Obaidi, N~~.F., ~~Morisco, L~~.L., ~~Wasserman, S~~.R., ~~Stead, M~~., Attonito, J.D.~~, Scott Glenn, A.,~~ Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., ~~Whalen, K.L~~., ~~Gerlt, J.A~~.~~, Almo~~, S.C., ~~Enzyme Function Initiative (EFI)~~	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~Description~~: ~~CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RUEGERIA POMEROYI DSS~~-~~3 (SPO1773, TARGET EFI-510260) WITH BOUND BENZOIC ACID~~	+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4paf\|4paf]], [[4pai\|4pai]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pbh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pbh RCSB], [http://www.ebi.ac.uk/pdbsum/4pbh PDBsum]</span></td></tr>
		+	<table>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Almo, S C.]]
		+	[[Category: Attonito, J D.]]
		+	[[Category: Chowdhury, S.]]
		+	[[Category: EFI, Enzyme Function Initiative.]]
		+	[[Category: Evans, B.]]
		+	[[Category: Gerlt, J A.]]
		+	[[Category: Glenn, A Scott.]]
		+	[[Category: Hillerich, B.]]
		+	[[Category: Love, J.]]
		+	[[Category: Morisco, L L.]]
		+	[[Category: Obaidi, N F.Al.]]
		+	[[Category: Seidel, R D.]]
		+	[[Category: Stead, M.]]
		+	[[Category: Vetting, M W.]]
		+	[[Category: Wasserman, S R.]]
		+	[[Category: Whalen, K L.]]
		+	[[Category: Efi]]
		+	[[Category: Enzyme function initiative]]
		+	[[Category: Solute-binding protein]]
		+	[[Category: Structural genomic]]
		+	[[Category: Trap periplasmic solute binding family]]

OCA: Protected "4pbh" [edit=sysop:move=sysop]

OCA — Wed, 23 Apr 2014 07:24:29 GMT

Protected "4pbh" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:24, 23 April 2014

OCA: New page: '''Unreleased structure''' The entry 4pbh is ON HOLD Authors: Vetting, M.W., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Stead, M., Attonito, J.D., Scott Glenn, A., Chowdhury, S., ...

OCA — Wed, 23 Apr 2014 07:24:28 GMT

New page: '''Unreleased structure''' The entry 4pbh is ON HOLD Authors: Vetting, M.W., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Stead, M., Attonito, J.D., Scott Glenn, A., Chowdhury, S., ...

New page

'''Unreleased structure'''

The entry 4pbh is ON HOLD

Authors: Vetting, M.W., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Stead, M., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

Description: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND BENZOIC ACID