4ph2 - Revision history

OCA at 07:17, 27 September 2023

OCA — Wed, 27 Sep 2023 07:17:01 GMT

←Older revision		Revision as of 07:17, 27 September 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4ph2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bovine_leukemia_virus Bovine leukemia virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PH2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PH2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ph2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bovine_leukemia_virus Bovine leukemia virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PH2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PH2 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.44Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ph2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ph2 OCA], [https://pdbe.org/4ph2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ph2 RCSB], [https://www.ebi.ac.uk/pdbsum/4ph2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ph2 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ph2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ph2 OCA], [https://pdbe.org/4ph2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ph2 RCSB], [https://www.ebi.ac.uk/pdbsum/4ph2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ph2 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 13:01, 1 February 2023

OCA — Wed, 01 Feb 2023 13:01:49 GMT

←Older revision		Revision as of 13:01, 1 February 2023
Line 1:		Line 1:

	==mature N-terminal domain of capsid protein from bovine leukemia virus==		==mature N-terminal domain of capsid protein from bovine leukemia virus==
-	<StructureSection load='4ph2' size='340' side='right' caption='[[4ph2]], [[Resolution\|resolution]] 1.44Å' scene=''>	+	<StructureSection load='4ph2' size='340' side='right'caption='[[4ph2]], [[Resolution\|resolution]] 1.44Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ph2]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Blv Blv~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PH2 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4PH2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ph2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bovine_leukemia_virus Bovine leukemia virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PH2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PH2 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">gag-pro-pol ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11901 BLV])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ph2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ph2 OCA], [https://pdbe.org/4ph2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ph2 RCSB], [https://www.ebi.ac.uk/pdbsum/4ph2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ph2 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4ph2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ph2 OCA], [~~http~~://pdbe.org/4ph2 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4ph2 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4ph2 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4ph2 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/L0PI28_BLV L0PI28_BLV]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Blv~~]]	+	[[Category: Bovine leukemia virus]]
-	[[Category: Buschiazzo, A]]	+	[[Category: Large Structures]]
-	[[Category: Obal, G]]	+	[[Category: Buschiazzo A]]
-	[[Category: Pritsch, O]]	+	[[Category: Obal G]]
-	[[Category: Trajtenberg, F]]	+	[[Category: Pritsch O]]
-	~~[[Category: All alpha]]~~	+	[[Category: Trajtenberg F]]
-	~~[[Category: Mature retroviral capsid ntd with beta-hairpin]]~~	+
-	~~[[Category: Viral protein~~]]	+

OCA at 08:40, 22 November 2017

OCA — Wed, 22 Nov 2017 08:40:40 GMT

←Older revision		Revision as of 08:40, 22 November 2017
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	<StructureSection load='4ph2' size='340' side='right' caption='[[4ph2]], [[Resolution\|resolution]] 1.44Å' scene=''>		<StructureSection load='4ph2' size='340' side='right' caption='[[4ph2]], [[Resolution\|resolution]] 1.44Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4ph2]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PH2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PH2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4ph2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Blv Blv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PH2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PH2 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">gag-pro-pol ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11901 BLV])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ph2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ph2 OCA], [http://pdbe.org/4ph2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ph2 RCSB], [http://www.ebi.ac.uk/pdbsum/4ph2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ph2 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ph2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ph2 OCA], [http://pdbe.org/4ph2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ph2 RCSB], [http://www.ebi.ac.uk/pdbsum/4ph2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ph2 ProSAT]</span></td></tr>
	</table>		</table>
Line 20:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Blv]]
	[[Category: Buschiazzo, A]]		[[Category: Buschiazzo, A]]
	[[Category: Obal, G]]		[[Category: Obal, G]]

OCA at 13:26, 19 April 2017

OCA — Wed, 19 Apr 2017 13:26:53 GMT

←Older revision		Revision as of 13:26, 19 April 2017
Line 1:		Line 1:
		+
	==mature N-terminal domain of capsid protein from bovine leukemia virus==		==mature N-terminal domain of capsid protein from bovine leukemia virus==
	<StructureSection load='4ph2' size='340' side='right' caption='[[4ph2]], [[Resolution\|resolution]] 1.44Å' scene=''>		<StructureSection load='4ph2' size='340' side='right' caption='[[4ph2]], [[Resolution\|resolution]] 1.44Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[4ph2]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PH2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PH2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[4ph2]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PH2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PH2 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ph2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ph2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ph2 RCSB], [http://www.ebi.ac.uk/pdbsum/4ph2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ph2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ph2 OCA], [http://pdbe.org/4ph2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ph2 RCSB], [http://www.ebi.ac.uk/pdbsum/4ph2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ph2 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 14:		Line 15:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4ph2" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 08:14, 17 June 2015

OCA — Wed, 17 Jun 2015 08:14:35 GMT

←Older revision		Revision as of 08:14, 17 June 2015
Line 6:		Line 6:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ph2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ph2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ph2 RCSB], [http://www.ebi.ac.uk/pdbsum/4ph2 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ph2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ph2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ph2 RCSB], [http://www.ebi.ac.uk/pdbsum/4ph2 PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Retroviruses depend upon self-assembly of their capsid proteins (core particle) to yield infectious mature virions. Despite the essential role of the retroviral core, its high polymorphism has hindered high-resolution structural analyses. Here, we report the x-ray structure of the native capsid (CA) protein from bovine leukemia virus. CA is organized as hexamers that deviate significantly from 6-fold symmetry, yet adjust to make two-dimensional pseudo-hexagonal arrays that mimic mature retroviral cores. Intra- and interhexameric quasi-equivalent contacts are uncovered, with flexible trimeric lateral contacts among hexamers, yet preserving very similar dimeric interfaces making the lattice. The conformation of each capsid subunit in the hexamer is therefore dictated by long-range interactions, revealing how the hexamers can also assemble into closed core particles, a relevant feature of retrovirus biology.
		+
		+	Conformational plasticity of a native retroviral capsid revealed by x-ray crystallography.,Obal G, Trajtenberg F, Carrion F, Tome L, Larrieux N, Zhang X, Pritsch O, Buschiazzo A Science. 2015 Jun 4. pii: aaa5182. PMID:26044299<ref>PMID:26044299</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 14:04, 10 June 2015

OCA — Wed, 10 Jun 2015 14:04:51 GMT

←Older revision		Revision as of 14:04, 10 June 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==mature N-terminal domain of capsid protein from bovine leukemia virus==
-		+	<StructureSection load='4ph2' size='340' side='right' caption='[[4ph2]], [[Resolution\|resolution]] 1.44Å' scene=''>
-	~~The entry~~ 4ph2 is ~~ON HOLD until Paper Publication~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4ph2]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PH2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PH2 FirstGlance]. <br>
-	~~Authors~~: ~~Trajtenberg, F~~.~~, Obal, G~~.~~, Pritsch, O~~.~~, Buschiazzo, A~~.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ph2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ph2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ph2 RCSB], [http://www.ebi.ac.uk/pdbsum/4ph2 PDBsum]</span></td></tr>
-	~~Description~~: ~~mature N~~-~~terminal domain of capsid protein from bovine leukemia virus~~	+	</table>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	__TOC__
-	[[~~Category~~: ~~Pritsch~~, O]]	+	</StructureSection>
	[[Category: Buschiazzo, A]]		[[Category: Buschiazzo, A]]
	[[Category: Obal, G]]		[[Category: Obal, G]]
		+	[[Category: Pritsch, O]]
	[[Category: Trajtenberg, F]]		[[Category: Trajtenberg, F]]
		+	[[Category: All alpha]]
		+	[[Category: Mature retroviral capsid ntd with beta-hairpin]]
		+	[[Category: Viral protein]]

OCA at 15:02, 24 December 2014

OCA — Wed, 24 Dec 2014 15:02:30 GMT

←Older revision		Revision as of 15:02, 24 December 2014
Line 6:		Line 6:

	Description: mature N-terminal domain of capsid protein from bovine leukemia virus		Description: mature N-terminal domain of capsid protein from bovine leukemia virus
		+	[[Category: Unreleased Structures]]
		+	[[Category: Pritsch, O]]
		+	[[Category: Buschiazzo, A]]
		+	[[Category: Obal, G]]
		+	[[Category: Trajtenberg, F]]

OCA at 07:08, 2 July 2014

OCA — Wed, 02 Jul 2014 07:08:53 GMT

←Older revision		Revision as of 07:08, 2 July 2014
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4ph2 is ON HOLD	+	The entry 4ph2 is ON HOLD until Paper Publication

	Authors: Trajtenberg, F., Obal, G., Pritsch, O., Buschiazzo, A.		Authors: Trajtenberg, F., Obal, G., Pritsch, O., Buschiazzo, A.

	Description: mature N-terminal domain of capsid protein from bovine leukemia virus		Description: mature N-terminal domain of capsid protein from bovine leukemia virus

OCA at 07:52, 11 June 2014

OCA — Wed, 11 Jun 2014 07:52:30 GMT

←Older revision		Revision as of 07:52, 11 June 2014
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4ph2 is ON HOLD ~~until Paper Publication~~	+	The entry 4ph2 is ON HOLD

	Authors: Trajtenberg, F., Obal, G., Pritsch, O., Buschiazzo, A.		Authors: Trajtenberg, F., Obal, G., Pritsch, O., Buschiazzo, A.

	Description: mature N-terminal domain of capsid protein from bovine leukemia virus		Description: mature N-terminal domain of capsid protein from bovine leukemia virus

OCA: Protected "4ph2" [edit=sysop:move=sysop]

OCA — Wed, 14 May 2014 07:08:04 GMT

Protected "4ph2" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:08, 14 May 2014