4pon - Revision history

OCA at 15:00, 8 November 2023

OCA — Wed, 08 Nov 2023 15:00:28 GMT

←Older revision		Revision as of 15:00, 8 November 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4pon]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._spizizenii_str._W23 Bacillus subtilis subsp. spizizenii str. W23]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PON OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PON FirstGlance]. <br>		<table><tr><td colspan='2'>[[4pon]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._spizizenii_str._W23 Bacillus subtilis subsp. spizizenii str. W23]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PON OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PON FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4pon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pon OCA], [https://pdbe.org/4pon PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4pon RCSB], [https://www.ebi.ac.uk/pdbsum/4pon PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4pon ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4pon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pon OCA], [https://pdbe.org/4pon PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4pon RCSB], [https://www.ebi.ac.uk/pdbsum/4pon PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4pon ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 07:21, 8 February 2023

OCA — Wed, 08 Feb 2023 07:21:59 GMT

←Older revision		Revision as of 07:21, 8 February 2023
Line 1:		Line 1:

	==The crystal structure of a putative SAM-dependent methyltransferase, YtqB, from Bacillus subtilis==		==The crystal structure of a putative SAM-dependent methyltransferase, YtqB, from Bacillus subtilis==
-	<StructureSection load='4pon' size='340' side='right' caption='[[4pon]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='4pon' size='340' side='right'caption='[[4pon]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4pon]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Bacpz Bacpz~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PON OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4PON FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4pon]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._spizizenii_str._W23 Bacillus subtilis subsp. spizizenii str. W23]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PON OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PON FirstGlance]. <br>
-	</td></tr>~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4poo\|4poo]]</td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4pon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pon OCA], [https://pdbe.org/4pon PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4pon RCSB], [https://www.ebi.ac.uk/pdbsum/4pon PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4pon ProSAT]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BSUW23_14785, ytqB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=655816 BACPZ])</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4pon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pon OCA], [~~http~~://pdbe.org/4pon PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4pon RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4pon PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4pon ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/E0TY72_BACSH E0TY72_BACSH]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacpz~~]]	+	[[Category: Bacillus subtilis subsp. spizizenii str. W23]]
-	[[Category: ~~Park, S C~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Song, W S~~]]	+	[[Category: Park SC]]
-	[[Category: ~~Yoon, S I~~]]	+	[[Category: Song WS]]
-	[[Category: ~~A putative methyltransferase]]~~	+	[[Category: Yoon SI]]
-	~~[[Category: Rossmann-like fold]]~~	+
-	~~[[Category: S-adenosyl-l-methionine]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 17:06, 4 January 2017

OCA — Wed, 04 Jan 2017 17:06:30 GMT

←Older revision		Revision as of 17:06, 4 January 2017
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		+
	==The crystal structure of a putative SAM-dependent methyltransferase, YtqB, from Bacillus subtilis==		==The crystal structure of a putative SAM-dependent methyltransferase, YtqB, from Bacillus subtilis==
	<StructureSection load='4pon' size='340' side='right' caption='[[4pon]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='4pon' size='340' side='right' caption='[[4pon]], [[Resolution\|resolution]] 1.90Å' scene=''>
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	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4poo\|4poo]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4poo\|4poo]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BSUW23_14785, ytqB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=655816 BACPZ])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BSUW23_14785, ytqB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=655816 BACPZ])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pon OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pon RCSB], [http://www.ebi.ac.uk/pdbsum/4pon PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pon OCA], [http://pdbe.org/4pon PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4pon RCSB], [http://www.ebi.ac.uk/pdbsum/4pon PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4pon ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4pon" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 11:11, 20 January 2015

OCA — Tue, 20 Jan 2015 11:11:07 GMT

←Older revision		Revision as of 11:11, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4pon]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacpz Bacpz]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PON OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PON FirstGlance]. <br>		<table><tr><td colspan='2'>[[4pon]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacpz Bacpz]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PON OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PON FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4poo\|4poo]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4poo\|4poo]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BSUW23_14785, ytqB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=655816 BACPZ])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BSUW23_14785, ytqB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=655816 BACPZ])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pon OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pon RCSB], [http://www.ebi.ac.uk/pdbsum/4pon PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pon OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pon RCSB], [http://www.ebi.ac.uk/pdbsum/4pon PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Bacpz]]		[[Category: Bacpz]]
-	[[Category: Park, S C.]]	+	[[Category: Park, S C]]
-	[[Category: Song, W S.]]	+	[[Category: Song, W S]]
-	[[Category: Yoon, S I.]]	+	[[Category: Yoon, S I]]
	[[Category: A putative methyltransferase]]		[[Category: A putative methyltransferase]]
	[[Category: Rossmann-like fold]]		[[Category: Rossmann-like fold]]
	[[Category: S-adenosyl-l-methionine]]		[[Category: S-adenosyl-l-methionine]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 05:46, 24 September 2014

OCA — Wed, 24 Sep 2014 05:46:50 GMT

←Older revision		Revision as of 05:46, 24 September 2014
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-	~~{{STRUCTURE_4pon\| PDB=4pon \| SCENE= }}~~	+	==The crystal structure of a putative SAM-dependent methyltransferase, YtqB, from Bacillus subtilis==
-	===The crystal structure of a putative SAM-dependent methyltransferase, YtqB, from Bacillus subtilis===	+	<StructureSection load='4pon' size='340' side='right' caption='[[4pon]], [[Resolution\|resolution]] 1.90Å' scene=''>
-	~~{{ABSTRACT_PUBMED_24637210}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[4pon]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacpz Bacpz]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PON OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PON FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4poo\|4poo]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BSUW23_14785, ytqB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=655816 BACPZ])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pon OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pon RCSB], [http://www.ebi.ac.uk/pdbsum/4pon PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	S-adenosyl-l-methionine (SAM)-dependent methyltransferases (MTases) methylate diverse biological molecules using a SAM cofactor. The ytqB gene of Bacillus subtilis encodes a putative MTase and its biological function has never been characterized. To reveal the structural features and the cofactor binding mode of YtqB, we have determined the crystal structures of YtqB alone and in complex with its cofactor, SAM, at 1.9A and 2.2A resolutions, respectively. YtqB folds into a beta-sheet sandwiched by two alpha-helical layers, and assembles into a dimeric form. Each YtqB monomer contains one SAM binding site, which shapes SAM into a slightly curved conformation and exposes the reactive methyl group of SAM potentially to a substrate. Our comparative structural analysis of YtqB and its homologues indicates that YtqB is a SAM-dependent class I MTase, and provides insights into the substrate binding site of YtqB.

-	~~==About this Structure==~~	+	Structural analysis of a putative SAM-dependent methyltransferase, YtqB, from Bacillus subtilis.,Park SC, Song WS, Yoon SI Biochem Biophys Res Commun. 2014 Mar 14. pii: S0006-291X(14)00460-4. doi:, 10.1016/j.bbrc.2014.03.026. PMID:24637210<ref>PMID:24637210</ref>
-	~~[[4pon]] is~~ a ~~2 chain structure. Full crystallographic information is available~~ from ~~[http://oca~~.~~weizmann~~.ac.~~il/oca~~-~~bin~~/~~ocashort?id=4PON OCA]~~.	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:024637210</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Bacpz]]
	[[Category: Park, S C.]]		[[Category: Park, S C.]]
	[[Category: Song, W S.]]		[[Category: Song, W S.]]

OCA at 09:20, 2 April 2014

OCA — Wed, 02 Apr 2014 09:20:48 GMT

←Older revision		Revision as of 09:20, 2 April 2014
Line 1:		Line 1:
-	~~'''Unreleased~~ structure~~'''~~	+	{{STRUCTURE_4pon\| PDB=4pon \| SCENE= }}
		+	===The crystal structure of a putative SAM-dependent methyltransferase, YtqB, from Bacillus subtilis===
		+	{{ABSTRACT_PUBMED_24637210}}

-	~~The entry~~ 4pon is ~~ON HOLD until Paper Publication~~	+	==About this Structure==
		+	[[4pon]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PON OCA].

-	~~Authors~~: Park, S.C., Song, W.S., Yoon, S.I.	+	==Reference==
-		+	<ref group="xtra">PMID:024637210</ref><references group="xtra"/><references/>
-	~~Description~~: ~~The crystal structure of a bacterial protein~~	+	[[Category: Park, S C.]]
		+	[[Category: Song, W S.]]
		+	[[Category: Yoon, S I.]]
		+	[[Category: A putative methyltransferase]]
		+	[[Category: Rossmann-like fold]]
		+	[[Category: S-adenosyl-l-methionine]]
		+	[[Category: Transferase]]

OCA: Protected "4pon" [edit=sysop:move=sysop]

OCA — Wed, 12 Mar 2014 12:32:27 GMT

Protected "4pon" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:32, 12 March 2014

OCA: New page: '''Unreleased structure''' The entry 4pon is ON HOLD until Paper Publication Authors: Park, S.C., Song, W.S., Yoon, S.I. Description: The crystal structure of a bacterial protein

OCA — Wed, 12 Mar 2014 12:32:25 GMT

New page: '''Unreleased structure''' The entry 4pon is ON HOLD until Paper Publication Authors: Park, S.C., Song, W.S., Yoon, S.I. Description: The crystal structure of a bacterial protein

New page

'''Unreleased structure'''

The entry 4pon is ON HOLD until Paper Publication

Authors: Park, S.C., Song, W.S., Yoon, S.I.

Description: The crystal structure of a bacterial protein