4q3g - Revision history

OCA at 07:42, 8 February 2023

OCA — Wed, 08 Feb 2023 07:42:21 GMT

←Older revision		Revision as of 07:42, 8 February 2023
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	<StructureSection load='4q3g' size='340' side='right'caption='[[4q3g]], [[Resolution\|resolution]] 2.79Å' scene=''>		<StructureSection load='4q3g' size='340' side='right'caption='[[4q3g]], [[Resolution\|resolution]] 2.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4q3g]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Orysa Orysa~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q3G OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4Q3G FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4q3g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q3G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Q3G FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q3i\|4q3i]]~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4q3g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q3g OCA], [https://pdbe.org/4q3g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4q3g RCSB], [https://www.ebi.ac.uk/pdbsum/4q3g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4q3g ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4q3g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q3g OCA], [~~http~~://pdbe.org/4q3g PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4q3g RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4q3g PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4q3g ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q01JP8_ORYSA Q01JP8_ORYSA]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Orysa~~]]	+	[[Category: Oryza sativa]]
-	[[Category: Adams~~, P D~~]]	+	[[Category: Adams PD]]
-	[[Category: Hammock~~, B D~~]]	+	[[Category: Hammock BD]]
-	[[Category: Kamita~~, S G~~]]	+	[[Category: Kamita SG]]
-	[[Category: Majumder, D]]	+	[[Category: Majumder D]]
-	[[Category: McAndrew~~, R P~~]]	+	[[Category: McAndrew RP]]
-	[[Category: Pereira~~, J H~~]]	+	[[Category: Pereira JH]]
-	[[Category: Pruitt~~, R N~~]]	+	[[Category: Pruitt RN]]
-	[[Category: Ronald~~, P C]]~~	+	[[Category: Ronald PC]]
-	~~[[Category: Brassinosteroid]]~~	+
-	~~[[Category: Leucine rich repeat]]~~	+
-	~~[[Category: Toll-like receptor]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 09:34, 24 April 2019

OCA — Wed, 24 Apr 2019 09:34:23 GMT

←Older revision		Revision as of 09:34, 24 April 2019
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	==Structure of the OsSERK2 leucine rich repeat extracellular domain==		==Structure of the OsSERK2 leucine rich repeat extracellular domain==
-	<StructureSection load='4q3g' size='340' side='right' caption='[[4q3g]], [[Resolution\|resolution]] 2.79Å' scene=''>	+	<StructureSection load='4q3g' size='340' side='right'caption='[[4q3g]], [[Resolution\|resolution]] 2.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4q3g]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q3G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Q3G FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4q3g]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Orysa Orysa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q3G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Q3G FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q3i\|4q3i]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q3i\|4q3i]]</td></tr>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Orysa]]
	[[Category: Adams, P D]]		[[Category: Adams, P D]]
	[[Category: Hammock, B D]]		[[Category: Hammock, B D]]

OCA at 21:18, 11 August 2016

OCA — Thu, 11 Aug 2016 21:18:11 GMT

←Older revision		Revision as of 21:18, 11 August 2016
Line 1:		Line 1:
		+
	==Structure of the OsSERK2 leucine rich repeat extracellular domain==		==Structure of the OsSERK2 leucine rich repeat extracellular domain==
	<StructureSection load='4q3g' size='340' side='right' caption='[[4q3g]], [[Resolution\|resolution]] 2.79Å' scene=''>		<StructureSection load='4q3g' size='340' side='right' caption='[[4q3g]], [[Resolution\|resolution]] 2.79Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q3i\|4q3i]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q3i\|4q3i]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q3g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q3g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4q3g RCSB], [http://www.ebi.ac.uk/pdbsum/4q3g PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q3g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q3g OCA], [http://pdbe.org/4q3g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4q3g RCSB], [http://www.ebi.ac.uk/pdbsum/4q3g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4q3g ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4q3g" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 10:07, 19 November 2014

OCA — Wed, 19 Nov 2014 10:07:59 GMT

←Older revision		Revision as of 10:07, 19 November 2014
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q3g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q3g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4q3g RCSB], [http://www.ebi.ac.uk/pdbsum/4q3g PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q3g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q3g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4q3g RCSB], [http://www.ebi.ac.uk/pdbsum/4q3g PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Somatic embryogenesis receptor kinases (SERKs) are leucine-rich repeat (LRR)-containing integral membrane receptors that are involved in the regulation of development and immune responses in plants. It has recently been shown that rice SERK2 (OsSERK2) is essential for XA21-mediated resistance to the pathogen Xanthomonas oryzae pv. oryzae. OsSERK2 is also required for the BRI1-mediated, FLS2-mediated and EFR-mediated responses to brassinosteroids, flagellin and elongation factor Tu (EF-Tu), respectively. Here, crystal structures of the LRR domains of OsSERK2 and a D128N OsSERK2 mutant, expressed as hagfish variable lymphocyte receptor (VLR) fusions, are reported. These structures suggest that the aspartate mutation does not generate any significant conformational change in the protein, but instead leads to an altered interaction with partner receptors.
		+
		+	Structure of the OsSERK2 leucine-rich repeat extracellular domain.,McAndrew R, Pruitt RN, Kamita SG, Pereira JH, Majumdar D, Hammock BD, Adams PD, Ronald PC Acta Crystallogr D Biol Crystallogr. 2014 Nov;70(Pt 11):3080-6. doi:, 10.1107/S1399004714021178. Epub 2014 Oct 29. PMID:25372696<ref>PMID:25372696</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 06:55, 12 November 2014

OCA — Wed, 12 Nov 2014 06:55:33 GMT

←Older revision		Revision as of 06:55, 12 November 2014
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-	'''~~Unreleased structure~~'''	+	==Structure of the OsSERK2 leucine rich repeat extracellular domain==
-		+	<StructureSection load='4q3g' size='340' side='right' caption='[[4q3g]], [[Resolution\|resolution]] 2.79Å' scene=''>
-	~~The entry~~ 4q3g is ~~ON HOLD until Paper Publication~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4q3g]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q3G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Q3G FirstGlance]. <br>
-	~~Authors~~: ~~McAndrew, R~~.P.~~, Pruitt, R~~.N., ~~Kamita, S~~.G., ~~Pereira, J~~.H., ~~Majumder, D~~., Hammock, B.D., ~~Adams~~, P.D., Ronald, P.C.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q3i\|4q3i]]</td></tr>
-	~~Description~~: ~~Structure of the OsSERK2 leucine~~ rich repeat ~~extracellular domain~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q3g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q3g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4q3g RCSB], [http://www.ebi.ac.uk/pdbsum/4q3g PDBsum]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Adams, P D]]
		+	[[Category: Hammock, B D]]
		+	[[Category: Kamita, S G]]
		+	[[Category: Majumder, D]]
		+	[[Category: McAndrew, R P]]
		+	[[Category: Pereira, J H]]
		+	[[Category: Pruitt, R N]]
		+	[[Category: Ronald, P C]]
		+	[[Category: Brassinosteroid]]
		+	[[Category: Leucine rich repeat]]
		+	[[Category: Toll-like receptor]]
		+	[[Category: Transferase]]

OCA at 08:05, 24 September 2014

OCA — Wed, 24 Sep 2014 08:05:19 GMT

←Older revision		Revision as of 08:05, 24 September 2014
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4q3g is ON HOLD	+	The entry 4q3g is ON HOLD until Paper Publication

	Authors: McAndrew, R.P., Pruitt, R.N., Kamita, S.G., Pereira, J.H., Majumder, D., Hammock, B.D., Adams, P.D., Ronald, P.C.		Authors: McAndrew, R.P., Pruitt, R.N., Kamita, S.G., Pereira, J.H., Majumder, D., Hammock, B.D., Adams, P.D., Ronald, P.C.

	Description: Structure of the OsSERK2 leucine rich repeat extracellular domain		Description: Structure of the OsSERK2 leucine rich repeat extracellular domain

OCA: Protected "4q3g" [edit=sysop:move=sysop]

OCA — Wed, 23 Apr 2014 07:28:54 GMT

Protected "4q3g" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:28, 23 April 2014

OCA: New page: '''Unreleased structure''' The entry 4q3g is ON HOLD Authors: McAndrew, R.P., Pruitt, R.N., Kamita, S.G., Pereira, J.H., Majumder, D., Hammock, B.D., Adams, P.D., Ronald, P.C. Descript...

OCA — Wed, 23 Apr 2014 07:28:54 GMT

New page: '''Unreleased structure''' The entry 4q3g is ON HOLD Authors: McAndrew, R.P., Pruitt, R.N., Kamita, S.G., Pereira, J.H., Majumder, D., Hammock, B.D., Adams, P.D., Ronald, P.C. Descript...

New page

'''Unreleased structure'''

The entry 4q3g is ON HOLD

Authors: McAndrew, R.P., Pruitt, R.N., Kamita, S.G., Pereira, J.H., Majumder, D., Hammock, B.D., Adams, P.D., Ronald, P.C.

Description: Structure of the OsSERK2 leucine rich repeat extracellular domain