4q6m - Revision history

OCA at 08:58, 20 March 2024

OCA — Wed, 20 Mar 2024 08:58:32 GMT

←Older revision		Revision as of 08:58, 20 March 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4q6m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q6M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Q6M FirstGlance]. <br>		<table><tr><td colspan='2'>[[4q6m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q6M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Q6M FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4q6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q6m OCA], [https://pdbe.org/4q6m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4q6m RCSB], [https://www.ebi.ac.uk/pdbsum/4q6m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4q6m ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4q6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q6m OCA], [https://pdbe.org/4q6m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4q6m RCSB], [https://www.ebi.ac.uk/pdbsum/4q6m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4q6m ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/O25708_HELPY O25708_HELPY]		[https://www.uniprot.org/uniprot/O25708_HELPY O25708_HELPY]
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Helicobacter pylori infection causes a variety of gastrointestinal diseases, including peptic ulcers and gastric cancer. Its colonization of the gastric mucosa of the human stomach is a prerequisite for survival in the stomach. Colonization depends on its motility, which is facilitated by the helical shape of the bacterium. In H. pylori, cross-linking relaxation or trimming of peptidoglycan muropeptides affects the helical cell shape. Csd4 has been identified as one of the cell shape-determining peptidoglycan hydrolases in H. pylori. It is a Zn(2+)-dependent D,L-carboxypeptidase that cleaves the bond between the gamma-D-Glu and the mDAP of the non-cross-linked muramyltripeptide (muramyl-L-Ala-gamma-D-Glu-mDAP) of the peptidoglycan to produce the muramyldipeptide (muramyl-L-Ala-gamma-D-Glu) and mDAP. Here, the crystal structure of H. pylori Csd4 (HP1075 in strain 26695) is reported in three different states: the ligand-unbound form, the substrate-bound form and the product-bound form. H. pylori Csd4 consists of three domains: an N-terminal D,L-carboxypeptidase domain with a typical carboxypeptidase fold, a central beta-barrel domain with a novel fold and a C-terminal immunoglobulin-like domain. The D,L-carboxypeptidase domain recognizes the substrate by interacting primarily with the terminal mDAP moiety of the muramyltripeptide. It undergoes a significant structural change upon binding either mDAP or the mDAP-containing muramyltripeptide. It it also shown that Csd5, another cell-shape determinant in H. pylori, is capable of interacting not only with H. pylori Csd4 but also with the dipeptide product of the reaction catalyzed by Csd4.
-
-	Structural basis for the recognition of muramyltripeptide by Helicobacter pylori Csd4, a D,L-carboxypeptidase controlling the helical cell shape.,Kim HS, Kim J, Im HN, An DR, Lee M, Hesek D, Mobashery S, Kim JY, Cho K, Yoon HJ, Han BW, Lee BI, Suh SW Acta Crystallogr D Biol Crystallogr. 2014 Nov;70(Pt 11):2800-12. doi:, 10.1107/S1399004714018732. Epub 2014 Oct 16. PMID:25372672<ref>PMID:25372672</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 4q6m" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 07:45, 8 February 2023

OCA — Wed, 08 Feb 2023 07:45:25 GMT

←Older revision		Revision as of 07:45, 8 February 2023
Line 3:		Line 3:
	<StructureSection load='4q6m' size='340' side='right'caption='[[4q6m]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='4q6m' size='340' side='right'caption='[[4q6m]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4q6m]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Campylobacter_pylori Campylobacter~~ pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q6M OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4Q6M FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4q6m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q6M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Q6M FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q6n\|4q6n]], [[4q6o\|4q6o]], [[4q6p\|4q6p]], [[4q6q\|4q6q]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4q6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q6m OCA], [https://pdbe.org/4q6m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4q6m RCSB], [https://www.ebi.ac.uk/pdbsum/4q6m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4q6m ProSAT]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HP_1075 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=85962 Campylobacter pylori])</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4q6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q6m OCA], [~~http~~://pdbe.org/4q6m PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4q6m RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4q6m PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4q6m ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O25708_HELPY O25708_HELPY]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Campylobacter~~ pylori]]	+	[[Category: Helicobacter pylori 26695]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: An~~, D R~~]]	+	[[Category: An DR]]
-	[[Category: Cho, K]]	+	[[Category: Cho K]]
-	[[Category: Han~~, B W~~]]	+	[[Category: Han BW]]
-	[[Category: Hesek, D]]	+	[[Category: Hesek D]]
-	[[Category: Im~~, H N~~]]	+	[[Category: Im HN]]
-	[[Category: Kim~~, H S~~]]	+	[[Category: Kim HS]]
-	[[Category: Kim, J]]	+	[[Category: Kim J]]
-	[[Category: Kim~~, J Y~~]]	+	[[Category: Kim JY]]
-	[[Category: Lee~~, B I~~]]	+	[[Category: Lee BI]]
-	[[Category: Lee, M]]	+	[[Category: Lee M]]
-	[[Category: Mobashery, S]]	+	[[Category: Mobashery S]]
-	[[Category: Suh~~, S W~~]]	+	[[Category: Suh SW]]
-	[[Category: Yoon~~, H J]]~~	+	[[Category: Yoon HJ]]
-	~~[[Category: Csd5]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: L-carboxypeptidase]]~~	+
-	~~[[Category: M14 metallopeptidase]]~~	+
-	~~[[Category: Peptidoglycan~~]]	+

OCA at 08:49, 24 April 2019

OCA — Wed, 24 Apr 2019 08:49:21 GMT

←Older revision		Revision as of 08:49, 24 April 2019
Line 1:		Line 1:

	==Structural analysis of the apo-form of Helicobacter pylori Csd4, a D,L-carboxypeptidase==		==Structural analysis of the apo-form of Helicobacter pylori Csd4, a D,L-carboxypeptidase==
-	<StructureSection load='4q6m' size='340' side='right' caption='[[4q6m]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='4q6m' size='340' side='right'caption='[[4q6m]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4q6m]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q6M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Q6M FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4q6m]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Campylobacter_pylori Campylobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q6M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Q6M FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q6n\|4q6n]], [[4q6o\|4q6o]], [[4q6p\|4q6p]], [[4q6q\|4q6q]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q6n\|4q6n]], [[4q6o\|4q6o]], [[4q6p\|4q6p]], [[4q6q\|4q6q]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HP_1075 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=85962 Campylobacter pylori])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q6m OCA], [http://pdbe.org/4q6m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4q6m RCSB], [http://www.ebi.ac.uk/pdbsum/4q6m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4q6m ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q6m OCA], [http://pdbe.org/4q6m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4q6m RCSB], [http://www.ebi.ac.uk/pdbsum/4q6m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4q6m ProSAT]</span></td></tr>
	</table>		</table>
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Campylobacter pylori]]
		+	[[Category: Large Structures]]
	[[Category: An, D R]]		[[Category: An, D R]]
	[[Category: Cho, K]]		[[Category: Cho, K]]

OCA at 10:50, 11 August 2016

OCA — Thu, 11 Aug 2016 10:50:38 GMT

←Older revision		Revision as of 10:50, 11 August 2016
Line 1:		Line 1:
		+
	==Structural analysis of the apo-form of Helicobacter pylori Csd4, a D,L-carboxypeptidase==		==Structural analysis of the apo-form of Helicobacter pylori Csd4, a D,L-carboxypeptidase==
	<StructureSection load='4q6m' size='340' side='right' caption='[[4q6m]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='4q6m' size='340' side='right' caption='[[4q6m]], [[Resolution\|resolution]] 1.60Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q6n\|4q6n]], [[4q6o\|4q6o]], [[4q6p\|4q6p]], [[4q6q\|4q6q]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q6n\|4q6n]], [[4q6o\|4q6o]], [[4q6p\|4q6p]], [[4q6q\|4q6q]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q6m OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4q6m RCSB], [http://www.ebi.ac.uk/pdbsum/4q6m PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q6m OCA], [http://pdbe.org/4q6m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4q6m RCSB], [http://www.ebi.ac.uk/pdbsum/4q6m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4q6m ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4q6m" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 10:49, 19 November 2014

OCA — Wed, 19 Nov 2014 10:49:30 GMT

←Older revision		Revision as of 10:49, 19 November 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q6m OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4q6m RCSB], [http://www.ebi.ac.uk/pdbsum/4q6m PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q6m OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4q6m RCSB], [http://www.ebi.ac.uk/pdbsum/4q6m PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Helicobacter pylori infection causes a variety of gastrointestinal diseases, including peptic ulcers and gastric cancer. Its colonization of the gastric mucosa of the human stomach is a prerequisite for survival in the stomach. Colonization depends on its motility, which is facilitated by the helical shape of the bacterium. In H. pylori, cross-linking relaxation or trimming of peptidoglycan muropeptides affects the helical cell shape. Csd4 has been identified as one of the cell shape-determining peptidoglycan hydrolases in H. pylori. It is a Zn(2+)-dependent D,L-carboxypeptidase that cleaves the bond between the gamma-D-Glu and the mDAP of the non-cross-linked muramyltripeptide (muramyl-L-Ala-gamma-D-Glu-mDAP) of the peptidoglycan to produce the muramyldipeptide (muramyl-L-Ala-gamma-D-Glu) and mDAP. Here, the crystal structure of H. pylori Csd4 (HP1075 in strain 26695) is reported in three different states: the ligand-unbound form, the substrate-bound form and the product-bound form. H. pylori Csd4 consists of three domains: an N-terminal D,L-carboxypeptidase domain with a typical carboxypeptidase fold, a central beta-barrel domain with a novel fold and a C-terminal immunoglobulin-like domain. The D,L-carboxypeptidase domain recognizes the substrate by interacting primarily with the terminal mDAP moiety of the muramyltripeptide. It undergoes a significant structural change upon binding either mDAP or the mDAP-containing muramyltripeptide. It it also shown that Csd5, another cell-shape determinant in H. pylori, is capable of interacting not only with H. pylori Csd4 but also with the dipeptide product of the reaction catalyzed by Csd4.
		+
		+	Structural basis for the recognition of muramyltripeptide by Helicobacter pylori Csd4, a D,L-carboxypeptidase controlling the helical cell shape.,Kim HS, Kim J, Im HN, An DR, Lee M, Hesek D, Mobashery S, Kim JY, Cho K, Yoon HJ, Han BW, Lee BI, Suh SW Acta Crystallogr D Biol Crystallogr. 2014 Nov;70(Pt 11):2800-12. doi:, 10.1107/S1399004714018732. Epub 2014 Oct 16. PMID:25372672<ref>PMID:25372672</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: An, D R.]]	+	[[Category: An, D R]]
-	[[Category: Cho, K.]]	+	[[Category: Cho, K]]
-	[[Category: Han, B W.]]	+	[[Category: Han, B W]]
-	[[Category: Hesek, D.]]	+	[[Category: Hesek, D]]
-	[[Category: Im, H N.]]	+	[[Category: Im, H N]]
-	[[Category: Kim, H S.]]	+	[[Category: Kim, H S]]
-	[[Category: Kim, J.]]	+	[[Category: Kim, J]]
-	[[Category: Kim, J Y.]]	+	[[Category: Kim, J Y]]
-	[[Category: Lee, B I.]]	+	[[Category: Lee, B I]]
-	[[Category: Lee, M.]]	+	[[Category: Lee, M]]
-	[[Category: Mobashery, S.]]	+	[[Category: Mobashery, S]]
-	[[Category: Suh, S W.]]	+	[[Category: Suh, S W]]
-	[[Category: Yoon, H J.]]	+	[[Category: Yoon, H J]]
	[[Category: Csd5]]		[[Category: Csd5]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 08:57, 5 November 2014

OCA — Wed, 05 Nov 2014 08:57:40 GMT

←Older revision		Revision as of 08:57, 5 November 2014
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Structural analysis of the apo-form of Helicobacter pylori Csd4, a D,L-carboxypeptidase==
-		+	<StructureSection load='4q6m' size='340' side='right' caption='[[4q6m]], [[Resolution\|resolution]] 1.60Å' scene=''>
-	~~The entry~~ 4q6m is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4q6m]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q6M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Q6M FirstGlance]. <br>
-	~~Authors~~: ~~Kim~~, H.S., ~~Kim, J~~., ~~Im, H~~.N., An, D.R., ~~Lee, M~~., Hesek, D., ~~Mobashery~~, S., Kim, J.Y., ~~Cho, K., Yoon, H.~~J.~~, Han~~, B.~~W.,~~ Lee, ~~B.I~~., Suh, S.W.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[4q6n\|4q6n]], [[4q6o\|4q6o]], [[4q6p\|4q6p]], [[4q6q\|4q6q]]</td></tr>
-	~~Description~~: ~~Structural analysis of the apo-form of Helicobacter pylori Csd4, a D~~,L-carboxypeptidase	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4q6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q6m OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4q6m RCSB], [http://www.ebi.ac.uk/pdbsum/4q6m PDBsum]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: An, D R.]]
		+	[[Category: Cho, K.]]
		+	[[Category: Han, B W.]]
		+	[[Category: Hesek, D.]]
		+	[[Category: Im, H N.]]
		+	[[Category: Kim, H S.]]
		+	[[Category: Kim, J.]]
		+	[[Category: Kim, J Y.]]
		+	[[Category: Lee, B I.]]
		+	[[Category: Lee, M.]]
		+	[[Category: Mobashery, S.]]
		+	[[Category: Suh, S W.]]
		+	[[Category: Yoon, H J.]]
		+	[[Category: Csd5]]
		+	[[Category: Hydrolase]]
		+	[[Category: L-carboxypeptidase]]
		+	[[Category: M14 metallopeptidase]]
		+	[[Category: Peptidoglycan]]

OCA: Protected "4q6m" [edit=sysop:move=sysop]

OCA — Wed, 30 Apr 2014 06:44:37 GMT

Protected "4q6m" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:44, 30 April 2014

OCA: New page: '''Unreleased structure''' The entry 4q6m is ON HOLD Authors: Kim, H.S., Kim, J., Im, H.N., An, D.R., Lee, M., Hesek, D., Mobashery, S., Kim, J.Y., Cho, K., Yoon, H.J., Han, B.W., Lee, ...

OCA — Wed, 30 Apr 2014 06:44:36 GMT

New page: '''Unreleased structure''' The entry 4q6m is ON HOLD Authors: Kim, H.S., Kim, J., Im, H.N., An, D.R., Lee, M., Hesek, D., Mobashery, S., Kim, J.Y., Cho, K., Yoon, H.J., Han, B.W., Lee, ...

New page

'''Unreleased structure'''

The entry 4q6m is ON HOLD

Authors: Kim, H.S., Kim, J., Im, H.N., An, D.R., Lee, M., Hesek, D., Mobashery, S., Kim, J.Y., Cho, K., Yoon, H.J., Han, B.W., Lee, B.I., Suh, S.W.

Description: Structural analysis of the apo-form of Helicobacter pylori Csd4, a D,L-carboxypeptidase