4qjv - Revision history

OCA at 08:59, 20 March 2024

OCA — Wed, 20 Mar 2024 08:59:02 GMT

←Older revision		Revision as of 08:59, 20 March 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[4qjv]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis_KOD1 Thermococcus kodakarensis KOD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QJV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4QJV FirstGlance]. <br>		<table><tr><td colspan='2'>[[4qjv]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis_KOD1 Thermococcus kodakarensis KOD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QJV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4QJV FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.601Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qjv OCA], [https://pdbe.org/4qjv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4qjv RCSB], [https://www.ebi.ac.uk/pdbsum/4qjv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4qjv ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qjv OCA], [https://pdbe.org/4qjv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4qjv RCSB], [https://www.ebi.ac.uk/pdbsum/4qjv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4qjv ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/RPO3_THEKO RPO3_THEKO] DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.[HAMAP-Rule:MF_00320]		[https://www.uniprot.org/uniprot/RPO3_THEKO RPO3_THEKO] DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.[HAMAP-Rule:MF_00320]
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The archaeal transcription apparatus is closely related to the eukaryotic RNA polymerase II (Pol II) system. Archaeal RNA polymerase (RNAP) and Pol II evolved from a common ancestral structure and the euryarchaeal RNAP is the simplest member of the extant archaeal-eukaryotic RNAP family. Here we report the first crystal structure of euryarchaeal RNAP from Thermococcus kodakarensis (Tko). This structure reveals that the clamp domain is able to swing away from the main body of RNAP in the presence of the Rpo4/Rpo7 stalk by coordinated movements of these domains. More detailed structure-function analysis of yeast Pol II and Tko RNAP identifies structural additions to Pol II that correspond to the binding sites of Pol II-specific general transcription factors including TFIIF, TFIIH and Mediator. Such comparisons provide a framework for dissecting interactions between RNAP and these factors during formation of the pre-initiation complex.
-
-	The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration.,Jun SH, Hirata A, Kanai T, Santangelo TJ, Imanaka T, Murakami KS Nat Commun. 2014 Oct 14;5:5132. doi: 10.1038/ncomms6132. PMID:25311937<ref>PMID:25311937</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 4qjv" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[RNA polymerase 3D structures\|RNA polymerase 3D structures]]		*[[RNA polymerase 3D structures\|RNA polymerase 3D structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 11:32, 15 February 2023

OCA — Wed, 15 Feb 2023 11:32:56 GMT

←Older revision		Revision as of 11:32, 15 February 2023
Line 3:		Line 3:
	<StructureSection load='4qjv' size='340' side='right'caption='[[4qjv]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='4qjv' size='340' side='right'caption='[[4qjv]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4qjv]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Pyrococcus_kodakaraensis_(strain_kod1) Pyrococcus kodakaraensis (strain kod1)~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QJV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4QJV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4qjv]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis_KOD1 Thermococcus kodakarensis KOD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QJV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4QJV FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rpoD, TK1503 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=69014 Pyrococcus kodakaraensis (strain KOD1)]), rpoL, TK1167 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=69014 Pyrococcus kodakaraensis (strain KOD1)])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qjv OCA], [https://pdbe.org/4qjv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4qjv RCSB], [https://www.ebi.ac.uk/pdbsum/4qjv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4qjv ProSAT]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_RNA_polymerase DNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.6 2.7.7.6] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=4qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qjv OCA], [~~http~~://pdbe.org/4qjv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=4qjv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/4qjv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=4qjv ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~RPOD_THEKO RPOD_THEKO]~~] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [~~[http~~:~~//www.uniprot.org/uniprot/RPOL_THEKO RPOL_THEKO~~]~~] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.~~	+	[https://www.uniprot.org/uniprot/RPO3_THEKO RPO3_THEKO] DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.[HAMAP-Rule:MF_00320]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 20:

	==See Also==		==See Also==
-	*[[RNA polymerase\|RNA polymerase]]	+	*[[RNA polymerase 3D structures\|RNA polymerase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: DNA-directed RNA polymerase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Hirata, A~~]]	+	[[Category: Thermococcus kodakarensis KOD1]]
-	[[Category: ~~Murakami, K S~~]]	+	[[Category: Hirata A]]
-	[[Category: ~~Rna polymerase]]~~	+	[[Category: Murakami KS]]
-	~~[[Category: Transcription]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 09:17, 24 April 2019

OCA — Wed, 24 Apr 2019 09:17:19 GMT

←Older revision		Revision as of 09:17, 24 April 2019
Line 1:		Line 1:

	==The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis==		==The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis==
-	<StructureSection load='4qjv' size='340' side='right' caption='[[4qjv]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='4qjv' size='340' side='right'caption='[[4qjv]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[4qjv]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QJV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QJV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[4qjv]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_kodakaraensis_(strain_kod1) Pyrococcus kodakaraensis (strain kod1)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QJV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QJV FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rpoD, TK1503 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=69014 Pyrococcus kodakaraensis (strain KOD1)]), rpoL, TK1167 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=69014 Pyrococcus kodakaraensis (strain KOD1)])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_RNA_polymerase DNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.6 2.7.7.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_RNA_polymerase DNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.6 2.7.7.6] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qjv OCA], [http://pdbe.org/4qjv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4qjv RCSB], [http://www.ebi.ac.uk/pdbsum/4qjv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4qjv ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qjv OCA], [http://pdbe.org/4qjv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4qjv RCSB], [http://www.ebi.ac.uk/pdbsum/4qjv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4qjv ProSAT]</span></td></tr>
Line 27:		Line 28:
	</StructureSection>		</StructureSection>
	[[Category: DNA-directed RNA polymerase]]		[[Category: DNA-directed RNA polymerase]]
		+	[[Category: Large Structures]]
	[[Category: Hirata, A]]		[[Category: Hirata, A]]
	[[Category: Murakami, K S]]		[[Category: Murakami, K S]]

OCA at 12:28, 5 August 2016

OCA — Fri, 05 Aug 2016 12:28:49 GMT

←Older revision		Revision as of 12:28, 5 August 2016
Line 1:		Line 1:
		+
	==The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis==		==The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis==
	<StructureSection load='4qjv' size='340' side='right' caption='[[4qjv]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='4qjv' size='340' side='right' caption='[[4qjv]], [[Resolution\|resolution]] 1.60Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_RNA_polymerase DNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.6 2.7.7.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_RNA_polymerase DNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.6 2.7.7.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qjv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qjv RCSB], [http://www.ebi.ac.uk/pdbsum/4qjv PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qjv OCA], [http://pdbe.org/4qjv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4qjv RCSB], [http://www.ebi.ac.uk/pdbsum/4qjv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4qjv ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 4qjv" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[RNA polymerase\|RNA polymerase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 18:51, 25 December 2014

OCA — Thu, 25 Dec 2014 18:51:32 GMT

←Older revision		Revision as of 18:51, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qjv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qjv RCSB], [http://www.ebi.ac.uk/pdbsum/4qjv PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qjv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qjv RCSB], [http://www.ebi.ac.uk/pdbsum/4qjv PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RPOD_THEKO RPOD_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOL_THEKO RPOL_THEKO]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 12:02, 10 December 2014

OCA — Wed, 10 Dec 2014 12:02:04 GMT

←Older revision		Revision as of 12:02, 10 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qjv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qjv RCSB], [http://www.ebi.ac.uk/pdbsum/4qjv PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qjv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qjv RCSB], [http://www.ebi.ac.uk/pdbsum/4qjv PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The archaeal transcription apparatus is closely related to the eukaryotic RNA polymerase II (Pol II) system. Archaeal RNA polymerase (RNAP) and Pol II evolved from a common ancestral structure and the euryarchaeal RNAP is the simplest member of the extant archaeal-eukaryotic RNAP family. Here we report the first crystal structure of euryarchaeal RNAP from Thermococcus kodakarensis (Tko). This structure reveals that the clamp domain is able to swing away from the main body of RNAP in the presence of the Rpo4/Rpo7 stalk by coordinated movements of these domains. More detailed structure-function analysis of yeast Pol II and Tko RNAP identifies structural additions to Pol II that correspond to the binding sites of Pol II-specific general transcription factors including TFIIF, TFIIH and Mediator. Such comparisons provide a framework for dissecting interactions between RNAP and these factors during formation of the pre-initiation complex.
		+
		+	The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration.,Jun SH, Hirata A, Kanai T, Santangelo TJ, Imanaka T, Murakami KS Nat Commun. 2014 Oct 14;5:5132. doi: 10.1038/ncomms6132. PMID:25311937<ref>PMID:25311937</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: DNA-directed RNA polymerase]]		[[Category: DNA-directed RNA polymerase]]
-	[[Category: Hirata, A.]]	+	[[Category: Hirata, A]]
-	[[Category: Murakami, K S.]]	+	[[Category: Murakami, K S]]
	[[Category: Rna polymerase]]		[[Category: Rna polymerase]]
	[[Category: Transcription]]		[[Category: Transcription]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 07:53, 8 October 2014

OCA — Wed, 08 Oct 2014 07:53:38 GMT

←Older revision		Revision as of 07:53, 8 October 2014
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis==
-		+	<StructureSection load='4qjv' size='340' side='right' caption='[[4qjv]], [[Resolution\|resolution]] 1.60Å' scene=''>
-	~~The entry~~ 4qjv is ~~ON HOLD until Paper Publication~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[4qjv]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QJV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QJV FirstGlance]. <br>
-	~~Authors~~: ~~Hirata~~, A., ~~Murakami~~, S.K.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_RNA_polymerase DNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.6 2.7.7.6] </span></td></tr>
-	~~Description~~: ~~The X~~-~~ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal~~ RNA polymerase ~~from Thermococcus kodakarensis~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qjv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qjv RCSB], [http://www.ebi.ac.uk/pdbsum/4qjv PDBsum]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: DNA-directed RNA polymerase]]
		+	[[Category: Hirata, A.]]
		+	[[Category: Murakami, K S.]]
		+	[[Category: Rna polymerase]]
		+	[[Category: Transcription]]
		+	[[Category: Transferase]]

OCA at 06:38, 18 June 2014

OCA — Wed, 18 Jun 2014 06:38:06 GMT

←Older revision		Revision as of 06:38, 18 June 2014
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 4qjv is ON HOLD	+	The entry 4qjv is ON HOLD until Paper Publication

-	Authors: Hirata,A, Murakami, S.K.	+	Authors: Hirata, A., Murakami, S.K.

	Description: The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis		Description: The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis

OCA: Protected "4qjv" [edit=sysop:move=sysop]

OCA — Wed, 11 Jun 2014 08:09:23 GMT

Protected "4qjv" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:09, 11 June 2014

OCA: New page: '''Unreleased structure''' The entry 4qjv is ON HOLD Authors: Hirata,A, Murakami, S.K. Description: The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase...

OCA — Wed, 11 Jun 2014 08:09:22 GMT

New page: '''Unreleased structure''' The entry 4qjv is ON HOLD Authors: Hirata,A, Murakami, S.K. Description: The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase...

New page

'''Unreleased structure'''

The entry 4qjv is ON HOLD

Authors: Hirata,A, Murakami, S.K.

Description: The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis